Wall clock time and date at job start Wed Apr 1 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47443 * 2 1 4 4 C 1.50697 * 109.46763 * 239.99703 * 2 1 3 5 5 H 1.08000 * 120.00244 * 245.62366 * 4 2 1 6 6 C 1.37878 * 119.99981 * 65.62464 * 4 2 1 7 7 N 1.31510 * 120.00028 * 9.34884 * 6 4 2 8 8 Si 1.86800 * 120.00160 * 189.34907 * 6 4 2 9 9 H 1.48501 * 109.47237 * 94.99048 * 8 6 4 10 10 H 1.48501 * 109.47274 * 214.99183 * 8 6 4 11 11 H 1.48498 * 109.47205 * 334.99073 * 8 6 4 12 12 N 1.46903 * 109.47156 * 120.00031 * 2 1 3 13 13 C 1.46900 * 110.99845 * 58.94877 * 12 2 1 14 14 C 1.38584 * 110.99830 * 295.00023 * 12 2 1 15 15 N 1.31208 * 126.47423 * 64.29640 * 14 12 2 16 16 N 1.28534 * 109.85829 * 179.97438 * 15 14 12 17 17 C 1.30287 * 110.05192 * 0.02562 * 16 15 14 18 18 C 1.50703 * 126.34709 * 179.97438 * 17 16 15 19 19 H 1.08990 * 115.56672 * 205.63522 * 18 17 16 20 20 C 1.53546 * 117.51944 * 59.77236 * 18 17 16 21 21 H 1.08994 * 117.45555 * 359.95079 * 20 18 17 22 22 C 1.53055 * 116.09417 * 142.49230 * 20 18 17 23 23 C 1.53116 * 109.33405 * 89.40499 * 22 20 18 24 24 C 1.53326 * 108.38222 * 307.57361 * 23 22 20 25 25 O 1.42718 * 108.80757 * 71.94824 * 24 23 22 26 26 C 1.42009 * 115.40554 * 305.28138 * 25 24 23 27 27 H 1.08995 * 114.75552 * 165.69668 * 26 25 24 28 28 N 1.36457 * 126.46726 * 244.27107 * 14 12 2 29 29 C 1.46499 * 127.13963 * 359.97438 * 28 14 12 30 30 C 1.53001 * 109.46877 * 94.60735 * 29 28 14 31 31 C 1.52998 * 117.49735 * 243.74645 * 30 29 28 32 32 C 1.53004 * 117.49733 * 175.08840 * 30 29 28 33 33 H 1.09001 * 109.47729 * 184.57416 * 1 2 3 34 34 H 1.09002 * 109.46975 * 304.57228 * 1 2 3 35 35 H 1.09001 * 109.47564 * 64.57386 * 1 2 3 36 36 H 0.97003 * 119.99963 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47499 * 298.18879 * 13 12 2 38 38 H 1.09003 * 109.47014 * 58.19064 * 13 12 2 39 39 H 1.09003 * 109.47238 * 178.18364 * 13 12 2 40 40 H 1.08999 * 109.49435 * 329.44109 * 22 20 18 41 41 H 1.09006 * 109.51813 * 209.37523 * 22 20 18 42 42 H 1.09006 * 109.68322 * 187.85185 * 23 22 20 43 43 H 1.08999 * 109.71551 * 67.31509 * 23 22 20 44 44 H 1.08995 * 109.58270 * 312.15288 * 24 23 22 45 45 H 1.09006 * 109.57996 * 191.74450 * 24 23 22 46 46 H 1.08997 * 109.47199 * 214.60538 * 29 28 14 47 47 H 1.09001 * 109.46607 * 334.61224 * 29 28 14 48 48 H 1.08993 * 115.54951 * 29.41701 * 30 29 28 49 49 H 1.09000 * 117.50253 * 0.02562 * 31 30 29 50 50 H 1.08998 * 117.49875 * 145.02378 * 31 30 29 51 51 H 1.08993 * 117.49499 * 214.97868 * 32 30 29 52 52 H 1.09000 * 117.49890 * 359.97438 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1340 6 6 1.7973 -0.1757 -2.4794 7 7 1.3012 1.0369 -2.5928 8 14 2.1838 -1.1737 -4.0105 9 1 0.9564 -1.8727 -4.4686 10 1 2.6670 -0.2675 -5.0831 11 1 3.2354 -2.1742 -3.6969 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6697 -0.0023 2.3491 15 7 0.4526 0.2132 2.7894 16 7 0.4970 0.8865 3.8834 17 6 1.7346 1.1388 4.2029 18 6 2.2068 1.9032 5.4127 19 1 3.1788 2.3863 5.3141 20 6 1.8240 1.3524 6.7939 21 1 1.2307 0.4385 6.8237 22 6 2.8854 1.4835 7.8888 23 6 2.7093 2.8240 8.6076 24 6 2.6821 3.9376 7.5540 25 8 1.4465 3.8684 6.8432 26 6 1.1514 2.6098 6.2553 27 1 0.1179 2.4885 5.9311 28 7 2.5259 0.5812 3.2371 29 6 3.9891 0.6048 3.1700 30 6 4.4478 1.8980 2.4931 31 6 5.1912 1.7731 1.1616 32 6 5.9527 2.1669 2.4298 33 1 -0.3634 -1.0244 0.0820 34 1 -0.3633 0.5832 0.8462 35 1 -0.3634 0.4412 -0.9281 36 1 1.1356 1.4130 -3.4715 37 1 0.4394 -2.0735 1.2965 38 1 1.8491 -2.6060 0.3491 39 1 1.9316 -2.5755 2.1269 40 1 3.8779 1.4387 7.4405 41 1 2.7726 0.6693 8.6048 42 1 3.5424 2.9860 9.2916 43 1 1.7723 2.8224 9.1643 44 1 3.5111 3.8036 6.8593 45 1 2.7673 4.9071 8.0450 46 1 4.3999 0.5571 4.1785 47 1 4.3402 -0.2513 2.5937 48 1 3.7883 2.7559 2.6227 49 1 5.3531 0.7698 0.7677 50 1 5.0210 2.5493 0.4155 51 1 6.2831 3.2018 2.5174 52 1 6.6159 1.4227 2.8708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650523694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:44 Heat of formation + Delta-G solvation = 105.197665 kcal Electronic energy + Delta-G solvation = -32098.547792 eV Core-core repulsion = 28101.981387 eV Total energy + Delta-G solvation = -3996.566405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.56040 -40.31468 -37.58986 -37.22569 -35.18172 -33.96225 -33.29947 -32.71077 -29.54302 -28.60823 -27.46630 -26.69496 -25.25650 -25.13717 -23.88207 -23.21502 -22.24839 -21.60212 -20.99311 -20.04558 -19.46942 -19.27468 -17.38215 -16.58108 -16.31163 -16.25746 -15.80272 -15.49170 -14.93376 -14.89829 -14.63468 -14.58321 -14.21670 -14.08274 -13.66098 -13.31170 -13.14729 -12.99776 -12.57507 -12.37908 -12.26394 -11.87642 -11.61313 -11.57903 -11.49905 -11.40349 -11.31620 -11.16152 -10.97879 -10.94240 -10.81845 -10.54344 -10.45218 -10.38552 -10.21006 -10.06117 -10.01377 -9.83896 -9.62212 -9.34324 -8.90562 -8.41750 -8.29891 -7.73230 -6.09398 -4.11099 2.07469 2.61987 3.18731 3.27365 3.34992 3.36797 3.46207 3.68123 3.81384 4.22968 4.31029 4.35345 4.50189 4.53217 4.62274 4.65304 4.67182 4.74396 4.83674 4.99763 5.04133 5.10587 5.22353 5.25145 5.26440 5.30389 5.42730 5.52266 5.53593 5.65264 5.66631 5.76482 5.79040 5.85695 5.98230 6.00246 6.08261 6.18132 6.22101 6.31051 6.33560 6.49144 6.56788 6.82165 6.96090 7.03080 7.05361 7.15040 7.51924 7.59388 7.76484 7.93928 8.16292 8.48384 8.91284 9.24723 9.51886 11.00140 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.003074 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.882443 B = 9105.292497 C = 9835.333977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.227 3.773 3 H 0.044 0.956 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.468 5.468 13 C 0.044 3.956 14 C 0.381 3.619 15 N -0.312 5.312 16 N -0.293 5.293 17 C 0.191 3.809 18 C -0.102 4.102 19 H 0.121 0.879 20 C -0.163 4.163 21 H 0.119 0.881 22 C -0.092 4.092 23 C -0.157 4.157 24 C 0.052 3.948 25 O -0.341 6.341 26 C 0.080 3.920 27 H 0.158 0.842 28 N -0.462 5.462 29 C 0.149 3.851 30 C -0.175 4.175 31 C -0.154 4.154 32 C -0.176 4.176 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 2.444 19.889 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.122 3.878 3 H 0.062 0.938 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.194 5.194 13 C -0.104 4.104 14 C 0.025 3.975 15 N -0.155 5.155 16 N -0.133 5.133 17 C -0.076 4.076 18 C -0.123 4.123 19 H 0.139 0.861 20 C -0.183 4.183 21 H 0.137 0.863 22 C -0.129 4.129 23 C -0.195 4.195 24 C -0.025 4.025 25 O -0.258 6.258 26 C 0.021 3.979 27 H 0.175 0.825 28 N -0.155 5.155 29 C 0.026 3.974 30 C -0.195 4.195 31 C -0.191 4.191 32 C -0.214 4.214 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.115 0.885 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.584 2.683 19.739 21.315 hybrid contribution 1.102 -0.619 -1.201 1.743 sum 8.685 2.064 18.538 20.576 Atomic orbital electron populations 1.22412 0.99394 0.99627 1.01308 1.19368 0.90751 0.94451 0.83187 0.93783 1.20974 1.36104 1.08230 0.89358 0.91698 1.24887 0.95264 0.94644 0.98909 1.69985 1.44589 1.13907 1.23898 0.86545 0.78521 0.80031 0.82690 1.20668 1.21321 1.19796 1.59434 1.59223 1.02427 0.98316 1.22265 0.99024 0.87446 1.01649 1.22888 0.84489 0.97460 0.92673 1.74777 1.18239 1.16446 1.06041 1.73862 1.15989 1.14167 1.09319 1.23216 0.87978 1.02671 0.93733 1.20842 1.01676 1.03090 0.86711 0.86093 1.23214 1.02014 1.00216 0.92828 0.86310 1.21178 0.97477 0.97835 0.96432 1.22192 1.03427 0.95439 0.98411 1.22768 0.86689 0.99606 0.93402 1.87695 1.38964 1.30121 1.69019 1.22787 0.97657 0.81712 0.95751 0.82490 1.46204 1.08137 1.41787 1.19327 1.21310 0.75956 0.98552 1.01600 1.22510 0.95121 0.98714 1.03105 1.23050 1.01524 1.04040 0.90475 1.22970 0.92749 1.02338 1.03294 0.94772 0.94175 0.91391 0.92842 0.94030 0.89342 0.93948 0.91204 0.90660 0.90475 0.90373 0.92849 0.88336 0.89564 0.87720 0.87786 0.87665 0.88480 0.88787 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.29 37.16 0.31 -3.95 16 2 C 0.23 5.70 2.18 -68.86 -0.15 5.55 16 3 H 0.04 1.26 8.05 -51.93 -0.42 0.85 16 4 C -0.51 -13.33 7.95 -34.44 -0.27 -13.60 16 5 H 0.06 1.67 6.56 -52.49 -0.34 1.32 16 6 C 0.07 1.76 5.17 -17.82 -0.09 1.67 16 7 N -0.89 -25.10 12.16 55.43 0.67 -24.42 16 8 Si 0.89 20.74 29.55 -169.99 -5.02 15.71 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.47 -10.06 4.76 -176.08 -0.84 -10.90 16 13 C 0.04 0.86 8.77 60.06 0.53 1.38 16 14 C 0.38 7.90 6.27 -318.88 -2.00 5.90 16 15 N -0.31 -6.90 9.76 30.31 0.30 -6.60 16 16 N -0.29 -5.83 11.72 32.99 0.39 -5.44 16 17 C 0.19 3.19 7.59 -154.02 -1.17 2.02 16 18 C -0.10 -1.27 5.16 -91.79 -0.47 -1.74 16 19 H 0.12 1.34 7.27 -51.93 -0.38 0.97 16 20 C -0.16 -1.68 5.98 -90.60 -0.54 -2.22 16 21 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 22 C -0.09 -0.69 5.95 -26.64 -0.16 -0.85 16 23 C -0.16 -1.07 6.09 -26.50 -0.16 -1.23 16 24 C 0.05 0.42 6.62 37.33 0.25 0.67 16 25 O -0.34 -3.98 10.77 -35.23 -0.38 -4.36 16 26 C 0.08 0.97 6.69 -27.32 -0.18 0.78 16 27 H 0.16 2.08 7.82 -51.93 -0.41 1.67 16 28 N -0.46 -7.96 2.81 -114.09 -0.32 -8.28 16 29 C 0.15 2.03 6.27 -4.04 -0.03 2.00 16 30 C -0.18 -2.37 6.01 -90.62 -0.54 -2.91 16 31 C -0.15 -2.17 10.18 -26.69 -0.27 -2.45 16 32 C -0.18 -1.87 10.26 -26.69 -0.27 -2.15 16 33 H 0.03 0.82 6.18 -51.93 -0.32 0.50 16 34 H 0.04 1.02 5.99 -51.93 -0.31 0.71 16 35 H 0.07 1.86 6.82 -51.93 -0.35 1.51 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 38 H 0.09 1.73 6.37 -51.93 -0.33 1.40 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.41 7.12 -51.93 -0.37 0.04 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 47 H 0.10 1.48 7.85 -51.93 -0.41 1.07 16 48 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.10 1.57 8.03 -51.93 -0.42 1.15 16 50 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 51 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -30.84 408.47 -12.87 -43.71 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.58 Total: 5.55 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -5.24 Total: -11.13 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.20 Total: -55.64 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.38 Total: -4.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.84 -12.87 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650523694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.910 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds