Wall clock time and date at job start Wed Apr 1 2020 04:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 N 1.46506 * 109.47347 * 119.99712 * 2 1 3 5 5 C 1.36934 * 120.00354 * 275.00678 * 4 2 1 6 6 H 1.08004 * 119.99418 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99707 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47395 * 89.99123 * 9 7 5 11 11 H 1.48507 * 109.47090 * 209.99507 * 9 7 5 12 12 H 1.48506 * 109.47111 * 329.99294 * 9 7 5 13 13 C 1.53001 * 109.47506 * 240.00013 * 2 1 3 14 14 C 1.53034 * 109.45955 * 64.99609 * 13 2 1 15 15 C 1.53192 * 109.34185 * 178.60179 * 14 13 2 16 16 N 1.47002 * 108.73816 * 54.62241 * 15 14 13 17 17 C 1.34775 * 120.61061 * 126.38744 * 16 15 14 18 18 O 1.21276 * 120.00466 * 355.65447 * 17 16 15 19 19 C 1.50707 * 119.99591 * 175.64511 * 17 16 15 20 20 H 1.09008 * 109.46213 * 37.82153 * 19 17 16 21 21 C 1.53151 * 109.46583 * 157.80535 * 19 17 16 22 22 C 1.53406 * 109.22782 * 189.51033 * 21 19 17 23 23 C 1.51049 * 108.20360 * 311.15602 * 22 21 19 24 24 N 1.30092 * 127.38757 * 196.01721 * 23 22 21 25 25 C 1.34293 * 109.20878 * 179.91119 * 24 23 22 26 26 C 1.34854 * 108.07209 * 0.02562 * 25 24 23 27 27 N 1.35415 * 123.98195 * 15.97534 * 23 22 21 28 28 C 1.46477 * 124.82395 * 0.11869 * 27 23 22 29 29 C 1.46924 * 118.75180 * 306.41441 * 16 15 14 30 30 C 1.53046 * 109.45659 * 304.93181 * 13 2 1 31 31 H 1.09002 * 109.47176 * 60.00312 * 1 2 3 32 32 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47476 * 299.99741 * 1 2 3 34 34 H 0.97004 * 119.99894 * 94.99460 * 4 2 1 35 35 H 0.97004 * 119.99919 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46278 * 184.97585 * 13 2 1 37 37 H 1.08999 * 109.50441 * 298.57034 * 14 13 2 38 38 H 1.09004 * 109.49976 * 58.63288 * 14 13 2 39 39 H 1.08997 * 109.58910 * 174.44347 * 15 14 13 40 40 H 1.09001 * 109.58375 * 294.86982 * 15 14 13 41 41 H 1.09002 * 109.50870 * 309.42580 * 21 19 17 42 42 H 1.08998 * 109.50699 * 69.56788 * 21 19 17 43 43 H 1.08999 * 109.69120 * 191.49515 * 22 21 19 44 44 H 1.09000 * 109.74817 * 70.85105 * 22 21 19 45 45 H 1.07999 * 125.96334 * 180.02562 * 25 24 23 46 46 H 1.08002 * 126.65304 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.58366 * 257.31774 * 28 27 23 48 48 H 1.08998 * 109.57774 * 136.90748 * 28 27 23 49 49 H 1.08998 * 109.58666 * 293.81404 * 29 16 15 50 50 H 1.09001 * 109.69780 * 173.46478 * 29 16 15 51 51 H 1.08998 * 109.49795 * 301.33560 * 30 13 2 52 52 H 1.08999 * 109.49845 * 61.40380 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8924 1.0405 2.4242 7 6 2.6123 -0.6616 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7912 0.2704 5.1180 10 1 1.5239 0.1793 5.8865 11 1 3.8962 -0.3228 5.9134 12 1 3.0960 1.6956 4.8332 13 6 2.0400 -0.7212 -1.2492 14 6 1.6350 0.0693 -2.4954 15 6 2.1769 -0.6366 -3.7424 16 7 1.7130 -2.0314 -3.7346 17 6 1.0631 -2.5445 -4.7980 18 8 0.7866 -1.8334 -5.7407 19 6 0.6803 -4.0020 -4.8158 20 1 0.3690 -4.3080 -3.8169 21 6 -0.4754 -4.2142 -5.7980 22 6 -1.0175 -5.6405 -5.6397 23 6 0.1527 -6.5953 -5.6624 24 7 0.1182 -7.8830 -5.8448 25 6 1.3689 -8.3697 -5.7969 26 6 2.2104 -7.3396 -5.5751 27 7 1.4414 -6.2173 -5.4894 28 6 1.8852 -4.8413 -5.2547 29 6 1.9705 -2.8553 -2.5456 30 6 1.4309 -2.1239 -1.3125 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.2488 -2.3960 4.2419 36 1 3.1263 -0.7990 -1.2056 37 1 0.5480 0.1260 -2.5531 38 1 2.0492 1.0759 -2.4383 39 1 1.8087 -0.1332 -4.6363 40 1 3.2666 -0.6140 -3.7304 41 1 -1.2691 -3.4977 -5.5864 42 1 -0.1174 -4.0716 -6.8176 43 1 -1.6949 -5.8694 -6.4624 44 1 -1.5469 -5.7302 -4.6911 45 1 1.6514 -9.4053 -5.9152 46 1 3.2852 -7.3933 -5.4833 47 1 2.3017 -4.4298 -6.1741 48 1 2.6429 -4.8305 -4.4712 49 1 3.0434 -3.0136 -2.4362 50 1 1.4680 -3.8170 -2.6491 51 1 1.7004 -2.6784 -0.4136 52 1 0.3458 -2.0466 -1.3807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:08 Heat of formation + Delta-G solvation = 30.983741 kcal Electronic energy + Delta-G solvation = -31288.889032 eV Core-core repulsion = 27289.104470 eV Total energy + Delta-G solvation = -3999.784562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.61515 -40.63791 -38.40017 -36.49257 -35.55963 -33.56416 -33.05341 -31.61025 -30.68024 -30.13264 -28.78112 -28.21966 -25.73943 -24.90636 -24.01573 -23.39975 -22.90193 -21.65229 -21.37566 -19.89481 -19.14810 -18.64018 -17.58767 -17.39042 -17.14462 -16.21294 -15.92060 -15.51219 -15.02788 -14.67521 -14.58782 -14.46682 -14.34914 -14.10959 -14.00720 -13.83014 -13.80093 -13.39347 -13.16900 -13.02121 -12.72228 -12.33714 -12.31180 -12.11504 -11.99041 -11.73437 -11.60393 -11.45807 -11.33336 -11.10683 -10.89649 -10.69382 -10.40966 -10.34944 -10.22401 -10.19540 -10.01274 -9.86141 -9.75724 -9.61635 -8.96570 -8.79324 -8.58524 -7.00702 -5.82042 -3.10007 1.79117 2.12669 2.47741 2.75887 2.92654 3.39468 3.45190 3.46293 3.90863 3.98953 4.04551 4.13063 4.50210 4.53726 4.57755 4.72834 4.75137 4.86055 4.92860 4.95288 4.97863 5.04968 5.16212 5.20946 5.25808 5.33644 5.38380 5.47257 5.52343 5.54230 5.59445 5.67389 5.72540 5.75249 5.86636 5.88725 6.01853 6.03367 6.10120 6.16053 6.22337 6.36697 6.44117 6.52499 6.58256 6.67557 6.85822 6.87316 7.08064 7.15560 7.65945 7.85792 7.87477 8.37417 9.48617 10.06300 10.40674 11.40808 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002402 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.782570 B =11653.552747 C =12792.652614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.524 3.476 18 O -0.537 6.537 19 C -0.125 4.125 20 H 0.109 0.891 21 C -0.105 4.105 22 C -0.034 4.034 23 C 0.208 3.792 24 N -0.489 5.489 25 C -0.031 4.031 26 C -0.053 4.053 27 N -0.455 5.455 28 C 0.118 3.882 29 C 0.100 3.900 30 C -0.129 4.129 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.170 0.830 46 H 0.175 0.825 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -6.151 -20.301 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.335 5.335 17 C 0.311 3.689 18 O -0.414 6.414 19 C -0.147 4.147 20 H 0.127 0.873 21 C -0.143 4.143 22 C -0.073 4.073 23 C -0.055 4.055 24 N -0.208 5.208 25 C -0.179 4.179 26 C -0.186 4.186 27 N -0.138 5.138 28 C -0.005 4.005 29 C -0.022 4.022 30 C -0.167 4.167 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.187 0.813 46 H 0.193 0.807 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.116 -5.963 -20.751 21.814 hybrid contribution 1.163 0.490 1.386 1.874 sum -1.953 -5.473 -19.365 20.218 Atomic orbital electron populations 1.22534 0.99570 1.00819 0.99770 1.20193 0.91747 0.95222 0.86022 0.93597 1.42455 1.78171 1.10667 1.05334 1.19236 1.36248 0.93867 0.87408 0.91288 1.24712 1.02264 0.95996 0.98018 1.69646 1.51139 1.08670 1.28856 0.86220 0.77301 0.78816 0.84035 1.21778 1.21808 1.20817 1.21401 1.00433 0.94363 0.94736 1.21997 1.01763 0.99194 0.93697 1.21704 0.98837 0.80630 0.99863 1.48217 1.56234 1.13230 1.15856 1.20070 0.77632 0.88855 0.82377 1.90706 1.54049 1.61084 1.35561 1.21692 0.96800 0.93021 1.03170 0.87291 1.21540 0.97039 0.96163 0.99594 1.20252 0.92443 0.89941 1.04698 1.23370 0.85492 0.91884 1.04722 1.70075 1.23785 1.06614 1.20334 1.22375 0.88334 0.99348 1.07826 1.22590 0.98446 0.85781 1.11762 1.45308 1.07716 1.07433 1.53368 1.21773 0.96643 0.78792 1.03263 1.21988 1.01400 0.93935 0.84891 1.22006 1.01039 0.96774 0.96875 0.94488 0.93310 0.93105 0.78303 0.93555 0.90922 0.91221 0.90648 0.89158 0.91357 0.89187 0.90135 0.88186 0.88924 0.81256 0.80749 0.89074 0.88445 0.90855 0.90119 0.89536 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.76 37.15 0.33 -2.49 16 2 C 0.18 3.21 2.67 -67.93 -0.18 3.02 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.84 5.06 -53.43 -0.27 -17.11 16 5 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 9 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.09 -1.26 2.08 -90.58 -0.19 -1.44 16 14 C -0.13 -1.48 5.08 -26.61 -0.14 -1.62 16 15 C 0.11 1.18 6.44 -3.67 -0.02 1.16 16 16 N -0.60 -6.16 2.97 -172.71 -0.51 -6.67 16 17 C 0.52 5.56 6.80 -10.98 -0.07 5.48 16 18 O -0.54 -7.36 15.64 5.56 0.09 -7.28 16 19 C -0.13 -1.03 1.71 -91.56 -0.16 -1.19 16 20 H 0.11 0.84 6.19 -51.92 -0.32 0.52 16 21 C -0.10 -0.84 4.62 -26.44 -0.12 -0.96 16 22 C -0.03 -0.28 6.33 -27.50 -0.17 -0.45 16 23 C 0.21 2.23 7.65 -155.24 -1.19 1.04 16 24 N -0.49 -6.16 11.24 -10.62 -0.12 -6.28 16 25 C -0.03 -0.32 11.87 -17.68 -0.21 -0.53 16 26 C -0.05 -0.48 11.64 -16.76 -0.20 -0.67 16 27 N -0.45 -4.28 3.13 -113.76 -0.36 -4.64 16 28 C 0.12 0.90 6.22 -3.92 -0.02 0.88 16 29 C 0.10 0.97 6.02 -3.71 -0.02 0.95 16 30 C -0.13 -1.64 4.71 -26.61 -0.13 -1.76 16 31 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 32 H 0.05 0.82 6.38 -51.93 -0.33 0.49 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.38 9.31 6.35 -40.82 -0.26 9.05 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.85 6.64 -51.93 -0.34 0.50 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 42 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 46 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 48 H 0.10 0.62 7.85 -51.93 -0.41 0.21 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.65 5.40 -51.93 -0.28 0.37 16 51 H 0.09 1.29 6.74 -51.93 -0.35 0.94 16 52 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -32.91 397.27 -10.59 -43.51 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.37 Total: 7.61 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.74 Total: -5.51 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.54 Total: -61.16 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.91 -10.59 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.489 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds