Wall clock time and date at job start Wed Apr 1 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 N 1.46506 * 109.47347 * 119.99712 * 2 1 3 5 5 C 1.36934 * 120.00354 * 275.00678 * 4 2 1 6 6 H 1.08004 * 119.99418 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99707 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47395 * 89.99123 * 9 7 5 11 11 H 1.48507 * 109.47090 * 209.99507 * 9 7 5 12 12 H 1.48506 * 109.47111 * 329.99294 * 9 7 5 13 13 C 1.53001 * 109.47506 * 240.00013 * 2 1 3 14 14 C 1.53034 * 109.45955 * 64.99609 * 13 2 1 15 15 C 1.53192 * 109.34185 * 178.60179 * 14 13 2 16 16 N 1.47002 * 108.73816 * 54.62241 * 15 14 13 17 17 C 1.34775 * 120.61061 * 126.38744 * 16 15 14 18 18 O 1.21276 * 120.00466 * 355.65447 * 17 16 15 19 19 C 1.50707 * 119.99591 * 175.64511 * 17 16 15 20 20 H 1.09008 * 109.46213 * 37.82153 * 19 17 16 21 21 C 1.53151 * 109.46583 * 157.80535 * 19 17 16 22 22 C 1.53406 * 109.22782 * 189.51033 * 21 19 17 23 23 C 1.51049 * 108.20360 * 311.15602 * 22 21 19 24 24 N 1.30092 * 127.38757 * 196.01721 * 23 22 21 25 25 C 1.34293 * 109.20878 * 179.91119 * 24 23 22 26 26 C 1.34854 * 108.07209 * 0.02562 * 25 24 23 27 27 N 1.35415 * 123.98195 * 15.97534 * 23 22 21 28 28 C 1.46477 * 124.82395 * 0.11869 * 27 23 22 29 29 C 1.46924 * 118.75180 * 306.41441 * 16 15 14 30 30 C 1.53046 * 109.45659 * 304.93181 * 13 2 1 31 31 H 1.09002 * 109.47176 * 60.00312 * 1 2 3 32 32 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47476 * 299.99741 * 1 2 3 34 34 H 0.97004 * 119.99894 * 94.99460 * 4 2 1 35 35 H 0.97004 * 119.99919 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46278 * 184.97585 * 13 2 1 37 37 H 1.08999 * 109.50441 * 298.57034 * 14 13 2 38 38 H 1.09004 * 109.49976 * 58.63288 * 14 13 2 39 39 H 1.08997 * 109.58910 * 174.44347 * 15 14 13 40 40 H 1.09001 * 109.58375 * 294.86982 * 15 14 13 41 41 H 1.09002 * 109.50870 * 309.42580 * 21 19 17 42 42 H 1.08998 * 109.50699 * 69.56788 * 21 19 17 43 43 H 1.08999 * 109.69120 * 191.49515 * 22 21 19 44 44 H 1.09000 * 109.74817 * 70.85105 * 22 21 19 45 45 H 1.07999 * 125.96334 * 180.02562 * 25 24 23 46 46 H 1.08002 * 126.65304 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.58366 * 257.31774 * 28 27 23 48 48 H 1.08998 * 109.57774 * 136.90748 * 28 27 23 49 49 H 1.08998 * 109.58666 * 293.81404 * 29 16 15 50 50 H 1.09001 * 109.69780 * 173.46478 * 29 16 15 51 51 H 1.08998 * 109.49795 * 301.33560 * 30 13 2 52 52 H 1.08999 * 109.49845 * 61.40380 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8924 1.0405 2.4242 7 6 2.6123 -0.6616 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7912 0.2704 5.1180 10 1 1.5239 0.1793 5.8865 11 1 3.8962 -0.3228 5.9134 12 1 3.0960 1.6956 4.8332 13 6 2.0400 -0.7212 -1.2492 14 6 1.6350 0.0693 -2.4954 15 6 2.1769 -0.6366 -3.7424 16 7 1.7130 -2.0314 -3.7346 17 6 1.0631 -2.5445 -4.7980 18 8 0.7866 -1.8334 -5.7407 19 6 0.6803 -4.0020 -4.8158 20 1 0.3690 -4.3080 -3.8169 21 6 -0.4754 -4.2142 -5.7980 22 6 -1.0175 -5.6405 -5.6397 23 6 0.1527 -6.5953 -5.6624 24 7 0.1182 -7.8830 -5.8448 25 6 1.3689 -8.3697 -5.7969 26 6 2.2104 -7.3396 -5.5751 27 7 1.4414 -6.2173 -5.4894 28 6 1.8852 -4.8413 -5.2547 29 6 1.9705 -2.8553 -2.5456 30 6 1.4309 -2.1239 -1.3125 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.2488 -2.3960 4.2419 36 1 3.1263 -0.7990 -1.2056 37 1 0.5480 0.1260 -2.5531 38 1 2.0492 1.0759 -2.4383 39 1 1.8087 -0.1332 -4.6363 40 1 3.2666 -0.6140 -3.7304 41 1 -1.2691 -3.4977 -5.5864 42 1 -0.1174 -4.0716 -6.8176 43 1 -1.6949 -5.8694 -6.4624 44 1 -1.5469 -5.7302 -4.6911 45 1 1.6514 -9.4053 -5.9152 46 1 3.2852 -7.3933 -5.4833 47 1 2.3017 -4.4298 -6.1741 48 1 2.6429 -4.8305 -4.4712 49 1 3.0434 -3.0136 -2.4362 50 1 1.4680 -3.8170 -2.6491 51 1 1.7004 -2.6784 -0.4136 52 1 0.3458 -2.0466 -1.3807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664443110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:07 Heat of formation + Delta-G solvation = 12.243167 kcal Electronic energy + Delta-G solvation = -31289.701684 eV Core-core repulsion = 27289.104470 eV Total energy + Delta-G solvation = -4000.597214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.32109 -41.50743 -39.48730 -37.26748 -36.85974 -34.69083 -34.22368 -32.74139 -31.96691 -30.98907 -29.81707 -29.41903 -26.82677 -25.97625 -25.30202 -24.43954 -23.81557 -22.52558 -22.30967 -20.87714 -19.99197 -19.60843 -19.23772 -18.28048 -18.07392 -17.04023 -16.75992 -16.58296 -16.32953 -15.95758 -15.47575 -15.41894 -15.31400 -15.16679 -15.00910 -14.82340 -14.68815 -14.38783 -14.24786 -14.11073 -13.84938 -13.64560 -13.13018 -13.00733 -12.92858 -12.87636 -12.79697 -12.72300 -12.64648 -12.23141 -12.15913 -12.04356 -11.95527 -11.74878 -11.59030 -11.27107 -11.12727 -10.98221 -10.90144 -10.77686 -10.59327 -9.69777 -9.28834 -8.95535 -7.92021 -5.17894 1.09541 1.35295 1.47751 1.48290 1.56190 1.73312 1.99666 2.16998 2.57611 3.22270 3.28650 3.40330 3.41932 3.50577 3.73370 3.78941 3.90978 3.95276 4.00364 4.12349 4.16138 4.25647 4.26871 4.30847 4.36865 4.42668 4.52421 4.56128 4.58088 4.65896 4.72093 4.74952 4.80792 4.88343 4.90964 4.94671 4.96665 5.01019 5.10021 5.12327 5.14177 5.27152 5.33518 5.34908 5.43442 5.53474 5.59755 5.72307 5.84629 6.18842 6.31680 6.32634 7.03172 7.14474 7.38588 8.17300 8.40041 9.31282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002402 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.782570 B =11653.552747 C =12792.652614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.037 0.963 4 N -0.734 5.734 5 C -0.234 4.234 6 H 0.070 0.930 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.272 1.272 13 C -0.080 4.080 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.600 5.600 17 C 0.529 3.471 18 O -0.569 6.569 19 C -0.119 4.119 20 H 0.119 0.881 21 C -0.098 4.098 22 C -0.030 4.030 23 C 0.192 3.808 24 N -0.528 5.528 25 C -0.058 4.058 26 C -0.046 4.046 27 N -0.456 5.456 28 C 0.120 3.880 29 C 0.108 3.892 30 C -0.125 4.125 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.027 0.973 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.184 0.816 46 H 0.206 0.794 47 H 0.093 0.907 48 H 0.116 0.884 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -5.774 -21.191 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.055 0.945 4 N -0.375 5.375 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.197 1.197 13 C -0.099 4.099 14 C -0.157 4.157 15 C -0.008 4.008 16 N -0.332 5.332 17 C 0.316 3.684 18 O -0.448 6.448 19 C -0.140 4.140 20 H 0.137 0.863 21 C -0.137 4.137 22 C -0.068 4.068 23 C -0.071 4.071 24 N -0.248 5.248 25 C -0.205 4.205 26 C -0.179 4.179 27 N -0.139 5.139 28 C -0.002 4.002 29 C -0.014 4.014 30 C -0.163 4.163 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.201 0.799 46 H 0.223 0.777 47 H 0.111 0.889 48 H 0.134 0.866 49 H 0.103 0.897 50 H 0.120 0.880 51 H 0.081 0.919 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.809 -5.551 -21.666 22.541 hybrid contribution 1.041 0.420 1.600 1.955 sum -1.768 -5.131 -20.065 20.786 Atomic orbital electron populations 1.22381 0.98327 1.00874 1.00035 1.20434 0.92451 0.94793 0.86011 0.94526 1.42639 1.78332 1.10477 1.06078 1.19573 1.34361 0.94019 0.88620 0.91219 1.25413 1.03365 0.96875 1.01010 1.69781 1.52899 1.09958 1.29189 0.85277 0.76746 0.78110 0.80477 1.21848 1.22349 1.19733 1.21240 0.99784 0.95119 0.93756 1.21902 1.01611 0.99357 0.92831 1.21667 0.99534 0.80727 0.98855 1.48236 1.55912 1.13168 1.15892 1.20349 0.76790 0.89479 0.81757 1.90701 1.55264 1.62079 1.36722 1.21643 0.97127 0.91470 1.03764 0.86297 1.21463 0.97047 0.96131 0.99017 1.20296 0.91859 0.89266 1.05425 1.23770 0.86632 0.91880 1.04799 1.70028 1.25220 1.07864 1.21657 1.22783 0.88177 1.00684 1.08827 1.23088 0.99668 0.85122 1.10065 1.45436 1.07436 1.08106 1.52930 1.21862 0.96575 0.77772 1.04036 1.21961 1.02214 0.94135 0.83102 1.21904 1.00917 0.95961 0.97492 0.91567 0.93351 0.95422 0.79160 0.94192 0.91780 0.91469 0.89889 0.89478 0.90114 0.89002 0.91095 0.87688 0.88000 0.79880 0.77742 0.88891 0.86556 0.89732 0.87979 0.91875 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 8.76 71.98 0.63 -4.48 16 2 C 0.17 6.06 2.67 44.99 0.12 6.18 16 3 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 4 N -0.73 -34.26 5.06 -322.94 -1.63 -35.89 16 5 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16 9 Si 0.96 45.20 29.55 68.60 2.03 47.22 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 C -0.08 -2.12 2.08 -10.77 -0.02 -2.14 16 14 C -0.12 -2.49 5.08 30.67 0.16 -2.33 16 15 C 0.11 2.13 6.44 86.35 0.56 2.69 16 16 N -0.60 -10.68 2.97 -818.72 -2.43 -13.11 16 17 C 0.53 9.96 6.80 87.66 0.60 10.55 16 18 O -0.57 -14.60 15.64 -3.02 -0.05 -14.65 16 19 C -0.12 -1.66 1.71 -11.40 -0.02 -1.68 16 20 H 0.12 1.46 6.19 -2.38 -0.01 1.45 16 21 C -0.10 -1.42 4.62 30.78 0.14 -1.28 16 22 C -0.03 -0.44 6.33 30.09 0.19 -0.25 16 23 C 0.19 3.89 7.65 138.24 1.06 4.95 16 24 N -0.53 -13.03 11.24 -187.51 -2.11 -15.14 16 25 C -0.06 -1.16 11.87 83.54 0.99 -0.16 16 26 C -0.05 -0.74 11.64 83.22 0.97 0.23 16 27 N -0.46 -7.66 3.13 -513.82 -1.61 -9.27 16 28 C 0.12 1.51 6.22 86.47 0.54 2.05 16 29 C 0.11 1.80 6.02 86.36 0.52 2.32 16 30 C -0.12 -2.97 4.71 30.67 0.14 -2.83 16 31 H 0.07 1.76 6.60 -2.39 -0.02 1.75 16 32 H 0.05 1.57 6.38 -2.39 -0.02 1.56 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.38 18.50 6.35 -92.71 -0.59 17.91 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.47 6.64 -2.39 -0.02 1.45 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.09 1.76 7.00 -2.39 -0.02 1.74 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 42 H 0.07 1.17 8.12 -2.39 -0.02 1.16 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 46 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 47 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 48 H 0.12 1.05 7.85 -2.39 -0.02 1.03 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.10 1.31 5.40 -2.39 -0.01 1.29 16 51 H 0.06 1.84 6.74 -2.39 -0.02 1.83 16 52 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 Total: -1.00 -71.33 397.27 2.68 -68.64 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.34 Total: 30.39 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 7.87 Total: -1.49 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -7.50 Total: -130.12 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.05 Total: -14.65 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.33 2.68 -68.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.886 kcal (2) G-P(sol) polarization free energy of solvation -71.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds