Wall clock time and date at job start Wed Apr 1 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46774 * 2 1 4 4 N 1.46496 * 109.46731 * 239.99740 * 2 1 3 5 5 C 1.36939 * 119.99722 * 85.00604 * 4 2 1 6 6 H 1.07995 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99541 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46888 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47377 * 299.99945 * 9 7 5 12 12 H 1.48501 * 109.47374 * 60.00083 * 9 7 5 13 13 C 1.52997 * 109.46597 * 119.99771 * 2 1 3 14 14 C 1.53037 * 109.46196 * 60.03032 * 13 2 1 15 15 C 1.53193 * 109.31131 * 178.59625 * 14 13 2 16 16 N 1.46928 * 108.76432 * 54.65435 * 15 14 13 17 17 C 1.34776 * 120.62702 * 126.40457 * 16 15 14 18 18 O 1.21277 * 120.00475 * 355.59581 * 17 16 15 19 19 C 1.50700 * 119.99870 * 175.59883 * 17 16 15 20 20 H 1.09004 * 109.47080 * 37.86075 * 19 17 16 21 21 C 1.53148 * 109.47128 * 157.84713 * 19 17 16 22 22 C 1.53413 * 109.22977 * 189.50531 * 21 19 17 23 23 C 1.51041 * 108.20259 * 311.15396 * 22 21 19 24 24 N 1.30093 * 127.38464 * 196.01074 * 23 22 21 25 25 C 1.34295 * 109.21062 * 179.90719 * 24 23 22 26 26 C 1.34855 * 108.07031 * 0.02905 * 25 24 23 27 27 N 1.35419 * 123.98613 * 15.97283 * 23 22 21 28 28 C 1.46475 * 124.82163 * 0.12220 * 27 23 22 29 29 C 1.46917 * 118.73966 * 306.38092 * 16 15 14 30 30 C 1.53039 * 109.46462 * 299.97084 * 13 2 1 31 31 H 1.09003 * 109.46676 * 59.99828 * 1 2 3 32 32 H 1.08990 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46573 * 300.00655 * 1 2 3 34 34 H 0.96994 * 119.99799 * 264.99635 * 4 2 1 35 35 H 0.97000 * 119.99847 * 0.02562 * 8 7 5 36 36 H 1.09004 * 109.45651 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.49506 * 298.56135 * 14 13 2 38 38 H 1.09000 * 109.50186 * 58.65973 * 14 13 2 39 39 H 1.08997 * 109.60043 * 294.86515 * 15 14 13 40 40 H 1.09004 * 109.70059 * 174.50329 * 15 14 13 41 41 H 1.08995 * 109.50760 * 309.42185 * 21 19 17 42 42 H 1.09001 * 109.51073 * 69.56276 * 21 19 17 43 43 H 1.09004 * 109.68830 * 191.49353 * 22 21 19 44 44 H 1.08996 * 109.74847 * 70.85013 * 22 21 19 45 45 H 1.07994 * 125.96453 * 180.02562 * 25 24 23 46 46 H 1.08004 * 126.65449 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.58146 * 257.31639 * 28 27 23 48 48 H 1.08995 * 109.58169 * 136.90308 * 28 27 23 49 49 H 1.08998 * 109.59210 * 293.82410 * 29 16 15 50 50 H 1.09003 * 109.58542 * 173.39841 * 29 16 15 51 51 H 1.09007 * 109.49429 * 301.34299 * 30 13 2 52 52 H 1.09001 * 109.49557 * 61.40194 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6123 -0.6619 -3.5090 8 7 2.9261 -1.9387 -3.4497 9 14 2.7901 0.2698 -5.1182 10 1 3.3002 -0.6483 -6.1680 11 1 1.4674 0.8057 -5.5288 12 1 3.7446 1.3929 -4.9372 13 6 2.0400 -0.7212 1.2493 14 6 1.5303 -2.1642 1.2487 15 6 2.0714 -2.8931 2.4827 16 7 1.7085 -2.1257 3.6819 17 6 1.0559 -2.7154 4.7030 18 8 0.6920 -3.8681 4.6052 19 6 0.7782 -1.9423 5.9665 20 1 0.5284 -0.9117 5.7144 21 6 -0.3963 -2.5847 6.7103 22 6 -0.8281 -1.6670 7.8614 23 6 0.4059 -1.2703 8.6368 24 7 0.4569 -0.7504 9.8282 25 6 1.7402 -0.5438 10.1656 26 6 2.5136 -0.9528 9.1394 27 7 1.6699 -1.4117 8.1720 28 6 2.0225 -1.9621 6.8612 29 6 2.0711 -0.7034 3.7469 30 6 1.5303 0.0008 2.4987 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5140 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 2.8335 -2.4226 -2.6141 36 1 3.1300 -0.7215 1.2489 37 1 0.4406 -2.1651 1.2741 38 1 1.8741 -2.6712 0.3471 39 1 3.1563 -2.9724 2.4140 40 1 1.6351 -3.8903 2.5411 41 1 -1.2306 -2.7231 6.0227 42 1 -0.0892 -3.5510 7.1103 43 1 -1.5186 -2.1990 8.5159 44 1 -1.3126 -0.7767 7.4607 45 1 2.0916 -0.1235 11.0963 46 1 3.5922 -0.9227 9.0930 47 1 2.3724 -2.9877 6.9778 48 1 2.8071 -1.3554 6.4093 49 1 3.1560 -0.6040 3.7813 50 1 1.6326 -0.2550 4.6384 51 1 1.8741 1.0352 2.4867 52 1 0.4406 -0.0201 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:22 Heat of formation + Delta-G solvation = 32.552289 kcal Electronic energy + Delta-G solvation = -31232.070904 eV Core-core repulsion = 27232.354359 eV Total energy + Delta-G solvation = -3999.716545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.70111 -40.70256 -38.49493 -36.55889 -35.72719 -33.65114 -33.25525 -31.64041 -30.88413 -30.04344 -28.84147 -28.05681 -25.80494 -24.94005 -23.89762 -23.65560 -22.62518 -21.78181 -21.65044 -20.02035 -19.18675 -18.71858 -17.64319 -17.47103 -17.30801 -16.30576 -15.98386 -15.60766 -15.27855 -14.76325 -14.67195 -14.46907 -14.30228 -14.19066 -14.10571 -14.04495 -13.62255 -13.53915 -13.35400 -13.11594 -13.01364 -12.42398 -12.26294 -12.22332 -12.12611 -11.74093 -11.67326 -11.52680 -11.42474 -11.03480 -10.79618 -10.71767 -10.49584 -10.30471 -10.27504 -10.04711 -9.95201 -9.92248 -9.90240 -9.19362 -8.96747 -8.83877 -8.67349 -7.07162 -6.13193 -3.12965 1.70297 2.06469 2.41008 2.69617 2.83925 3.48736 3.51902 3.69529 3.83065 3.91347 3.96613 4.04464 4.38852 4.49249 4.58460 4.65403 4.66843 4.77886 4.80690 4.86845 4.89259 5.01022 5.09752 5.12504 5.18112 5.26080 5.30671 5.40528 5.45781 5.51940 5.55280 5.59578 5.65978 5.68937 5.77291 5.77956 5.93138 5.94609 6.01641 6.08812 6.13555 6.29539 6.37749 6.43766 6.50123 6.58149 6.76986 6.78571 7.01272 7.10436 7.78006 7.78880 7.81735 8.72331 9.19957 10.06125 10.21048 11.35023 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002073 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.466140 B =13506.843158 C =13742.807797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.184 3.816 3 H 0.047 0.953 4 N -0.736 5.736 5 C -0.329 4.329 6 H 0.063 0.937 7 C -0.046 4.046 8 N -0.944 5.944 9 Si 1.079 2.921 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.091 4.091 14 C -0.127 4.127 15 C 0.110 3.890 16 N -0.603 5.603 17 C 0.523 3.477 18 O -0.533 6.533 19 C -0.124 4.124 20 H 0.108 0.892 21 C -0.106 4.106 22 C -0.034 4.034 23 C 0.208 3.792 24 N -0.489 5.489 25 C -0.031 4.031 26 C -0.054 4.054 27 N -0.455 5.455 28 C 0.118 3.882 29 C 0.102 3.898 30 C -0.129 4.129 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.366 0.634 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.170 0.830 46 H 0.175 0.825 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.076 0.924 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 1.960 24.718 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.379 5.379 5 C -0.460 4.460 6 H 0.081 0.919 7 C -0.244 4.244 8 N -0.590 5.590 9 Si 0.910 3.090 10 H -0.211 1.211 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.111 4.111 14 C -0.165 4.165 15 C -0.011 4.011 16 N -0.336 5.336 17 C 0.309 3.691 18 O -0.409 6.409 19 C -0.146 4.146 20 H 0.126 0.874 21 C -0.144 4.144 22 C -0.073 4.073 23 C -0.055 4.055 24 N -0.208 5.208 25 C -0.179 4.179 26 C -0.187 4.187 27 N -0.138 5.138 28 C -0.005 4.005 29 C -0.021 4.021 30 C -0.168 4.168 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.188 0.812 46 H 0.192 0.808 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.580 1.561 23.362 23.556 hybrid contribution 0.544 -0.049 1.058 1.190 sum -2.036 1.512 24.419 24.551 Atomic orbital electron populations 1.22524 0.99504 1.00799 0.99832 1.20114 0.91747 0.95095 0.85639 0.93548 1.42492 1.79305 1.09846 1.06292 1.20029 1.41705 0.95051 0.89190 0.91885 1.25743 0.99526 0.97512 1.01590 1.70896 1.51422 1.08314 1.28329 0.83256 0.75860 0.74284 0.75644 1.21059 1.22326 1.22324 1.21411 1.00311 0.94643 0.94692 1.21961 1.01431 0.95991 0.97082 1.21750 0.99954 0.96080 0.83360 1.48188 1.56653 1.11044 1.17728 1.20075 0.77779 0.87069 0.84189 1.90726 1.51071 1.17505 1.81595 1.21684 0.96673 1.02486 0.93713 0.87441 1.21551 0.97228 0.98970 0.96698 1.20252 0.91548 1.00390 0.95110 1.23383 0.86467 1.03161 0.92445 1.70081 1.21652 1.17847 1.11209 1.22380 0.88596 1.06742 1.00140 1.22590 0.97357 1.07848 0.90860 1.45319 1.07341 1.47018 1.14168 1.21779 0.97169 1.00908 0.80633 1.21919 1.00533 0.80146 0.99462 1.22014 1.01655 0.99417 0.93706 0.93032 0.93430 0.94380 0.79934 0.93511 0.91099 0.91241 0.90069 0.91307 0.89017 0.89123 0.90050 0.88130 0.88979 0.81244 0.80762 0.88986 0.88532 0.90958 0.90108 0.90495 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.79 37.16 0.33 -2.53 16 2 C 0.18 3.36 2.72 -67.93 -0.18 3.18 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.74 -17.39 5.04 -53.42 -0.27 -17.66 16 5 C -0.33 -8.96 9.93 -15.06 -0.15 -9.11 16 6 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 7 C -0.05 -1.32 5.50 -17.43 -0.10 -1.41 16 8 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 9 Si 1.08 25.55 29.92 -169.99 -5.09 20.46 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.09 -1.28 2.14 -90.58 -0.19 -1.47 16 14 C -0.13 -1.77 4.81 -26.61 -0.13 -1.90 16 15 C 0.11 1.32 6.44 -3.71 -0.02 1.30 16 16 N -0.60 -6.14 2.97 -172.77 -0.51 -6.65 16 17 C 0.52 5.51 6.80 -10.99 -0.07 5.43 16 18 O -0.53 -7.55 15.64 5.56 0.09 -7.46 16 19 C -0.12 -0.93 1.71 -91.56 -0.16 -1.09 16 20 H 0.11 0.70 6.19 -51.93 -0.32 0.37 16 21 C -0.11 -0.81 4.62 -26.44 -0.12 -0.93 16 22 C -0.03 -0.25 6.33 -27.50 -0.17 -0.42 16 23 C 0.21 2.06 7.65 -155.24 -1.19 0.87 16 24 N -0.49 -5.73 11.24 -10.62 -0.12 -5.85 16 25 C -0.03 -0.29 11.87 -17.67 -0.21 -0.50 16 26 C -0.05 -0.43 11.64 -16.76 -0.20 -0.63 16 27 N -0.46 -3.88 3.13 -113.75 -0.36 -4.24 16 28 C 0.12 0.81 6.22 -3.92 -0.02 0.79 16 29 C 0.10 0.83 6.02 -3.72 -0.02 0.81 16 30 C -0.13 -1.34 4.97 -26.61 -0.13 -1.47 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 33 H 0.04 0.53 6.46 -51.93 -0.34 0.20 16 34 H 0.37 8.88 4.87 -40.82 -0.20 8.68 16 35 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 38 H 0.08 1.31 6.46 -51.93 -0.34 0.98 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 41 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 48 H 0.10 0.51 7.84 -51.93 -0.41 0.10 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.49 5.39 -51.93 -0.28 0.21 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -34.57 394.96 -10.52 -45.09 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.23 Total: 7.30 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.75 Total: -9.09 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.50 Total: -62.26 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.57 -10.52 -45.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.643 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds