Wall clock time and date at job start Wed Apr 1 2020 04:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46774 * 2 1 4 4 N 1.46496 * 109.46731 * 239.99740 * 2 1 3 5 5 C 1.36939 * 119.99722 * 85.00604 * 4 2 1 6 6 H 1.07995 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99541 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46888 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47377 * 299.99945 * 9 7 5 12 12 H 1.48501 * 109.47374 * 60.00083 * 9 7 5 13 13 C 1.52997 * 109.46597 * 119.99771 * 2 1 3 14 14 C 1.53037 * 109.46196 * 60.03032 * 13 2 1 15 15 C 1.53193 * 109.31131 * 178.59625 * 14 13 2 16 16 N 1.46928 * 108.76432 * 54.65435 * 15 14 13 17 17 C 1.34776 * 120.62702 * 126.40457 * 16 15 14 18 18 O 1.21277 * 120.00475 * 355.59581 * 17 16 15 19 19 C 1.50700 * 119.99870 * 175.59883 * 17 16 15 20 20 H 1.09004 * 109.47080 * 37.86075 * 19 17 16 21 21 C 1.53148 * 109.47128 * 157.84713 * 19 17 16 22 22 C 1.53413 * 109.22977 * 189.50531 * 21 19 17 23 23 C 1.51041 * 108.20259 * 311.15396 * 22 21 19 24 24 N 1.30093 * 127.38464 * 196.01074 * 23 22 21 25 25 C 1.34295 * 109.21062 * 179.90719 * 24 23 22 26 26 C 1.34855 * 108.07031 * 0.02905 * 25 24 23 27 27 N 1.35419 * 123.98613 * 15.97283 * 23 22 21 28 28 C 1.46475 * 124.82163 * 0.12220 * 27 23 22 29 29 C 1.46917 * 118.73966 * 306.38092 * 16 15 14 30 30 C 1.53039 * 109.46462 * 299.97084 * 13 2 1 31 31 H 1.09003 * 109.46676 * 59.99828 * 1 2 3 32 32 H 1.08990 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46573 * 300.00655 * 1 2 3 34 34 H 0.96994 * 119.99799 * 264.99635 * 4 2 1 35 35 H 0.97000 * 119.99847 * 0.02562 * 8 7 5 36 36 H 1.09004 * 109.45651 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.49506 * 298.56135 * 14 13 2 38 38 H 1.09000 * 109.50186 * 58.65973 * 14 13 2 39 39 H 1.08997 * 109.60043 * 294.86515 * 15 14 13 40 40 H 1.09004 * 109.70059 * 174.50329 * 15 14 13 41 41 H 1.08995 * 109.50760 * 309.42185 * 21 19 17 42 42 H 1.09001 * 109.51073 * 69.56276 * 21 19 17 43 43 H 1.09004 * 109.68830 * 191.49353 * 22 21 19 44 44 H 1.08996 * 109.74847 * 70.85013 * 22 21 19 45 45 H 1.07994 * 125.96453 * 180.02562 * 25 24 23 46 46 H 1.08004 * 126.65449 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.58146 * 257.31639 * 28 27 23 48 48 H 1.08995 * 109.58169 * 136.90308 * 28 27 23 49 49 H 1.08998 * 109.59210 * 293.82410 * 29 16 15 50 50 H 1.09003 * 109.58542 * 173.39841 * 29 16 15 51 51 H 1.09007 * 109.49429 * 301.34299 * 30 13 2 52 52 H 1.09001 * 109.49557 * 61.40194 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6123 -0.6619 -3.5090 8 7 2.9261 -1.9387 -3.4497 9 14 2.7901 0.2698 -5.1182 10 1 3.3002 -0.6483 -6.1680 11 1 1.4674 0.8057 -5.5288 12 1 3.7446 1.3929 -4.9372 13 6 2.0400 -0.7212 1.2493 14 6 1.5303 -2.1642 1.2487 15 6 2.0714 -2.8931 2.4827 16 7 1.7085 -2.1257 3.6819 17 6 1.0559 -2.7154 4.7030 18 8 0.6920 -3.8681 4.6052 19 6 0.7782 -1.9423 5.9665 20 1 0.5284 -0.9117 5.7144 21 6 -0.3963 -2.5847 6.7103 22 6 -0.8281 -1.6670 7.8614 23 6 0.4059 -1.2703 8.6368 24 7 0.4569 -0.7504 9.8282 25 6 1.7402 -0.5438 10.1656 26 6 2.5136 -0.9528 9.1394 27 7 1.6699 -1.4117 8.1720 28 6 2.0225 -1.9621 6.8612 29 6 2.0711 -0.7034 3.7469 30 6 1.5303 0.0008 2.4987 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5140 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 2.8335 -2.4226 -2.6141 36 1 3.1300 -0.7215 1.2489 37 1 0.4406 -2.1651 1.2741 38 1 1.8741 -2.6712 0.3471 39 1 3.1563 -2.9724 2.4140 40 1 1.6351 -3.8903 2.5411 41 1 -1.2306 -2.7231 6.0227 42 1 -0.0892 -3.5510 7.1103 43 1 -1.5186 -2.1990 8.5159 44 1 -1.3126 -0.7767 7.4607 45 1 2.0916 -0.1235 11.0963 46 1 3.5922 -0.9227 9.0930 47 1 2.3724 -2.9877 6.9778 48 1 2.8071 -1.3554 6.4093 49 1 3.1560 -0.6040 3.7813 50 1 1.6326 -0.2550 4.6384 51 1 1.8741 1.0352 2.4867 52 1 0.4406 -0.0201 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664443112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:20 Heat of formation + Delta-G solvation = 11.912050 kcal Electronic energy + Delta-G solvation = -31232.965932 eV Core-core repulsion = 27232.354359 eV Total energy + Delta-G solvation = -4000.611573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.32938 -41.56512 -39.59712 -37.31419 -37.04943 -34.92861 -34.23699 -32.61216 -32.22055 -30.86828 -29.70974 -29.43714 -26.87271 -25.80566 -25.43217 -24.62605 -23.58000 -22.84420 -22.33349 -20.95353 -19.98126 -19.66687 -19.41571 -18.38957 -18.08358 -17.16065 -16.88692 -16.66129 -16.33245 -15.91799 -15.65242 -15.40399 -15.37728 -15.27672 -15.10136 -14.84315 -14.70061 -14.53009 -14.37669 -14.23036 -13.83889 -13.56911 -13.22002 -13.10159 -13.02030 -12.91181 -12.76390 -12.61582 -12.51096 -12.21395 -12.08987 -11.95897 -11.87045 -11.75075 -11.50686 -11.32329 -11.09160 -10.98263 -10.89290 -10.83659 -10.59998 -9.75664 -9.29007 -9.08274 -8.36201 -5.28998 1.09128 1.32033 1.57526 1.67022 1.69373 1.83185 1.96459 2.16831 2.71897 3.19891 3.26887 3.38565 3.41925 3.48431 3.63163 3.73534 3.83093 3.90181 3.94168 4.00470 4.11716 4.16273 4.25472 4.27363 4.30876 4.37348 4.44042 4.53465 4.56896 4.57731 4.63100 4.72512 4.75310 4.79854 4.84003 4.89822 4.93419 4.95464 5.00053 5.05059 5.10771 5.14925 5.25984 5.33077 5.35807 5.48796 5.62680 5.63798 5.84569 6.18051 6.30117 6.52568 6.99955 7.14301 7.14425 8.05952 8.16204 9.15759 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002073 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.466140 B =13506.843158 C =13742.807797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 H 0.041 0.959 4 N -0.749 5.749 5 C -0.323 4.323 6 H 0.064 0.936 7 C -0.109 4.109 8 N -0.978 5.978 9 Si 1.124 2.876 10 H -0.296 1.296 11 H -0.281 1.281 12 H -0.277 1.277 13 C -0.080 4.080 14 C -0.118 4.118 15 C 0.118 3.882 16 N -0.601 5.601 17 C 0.525 3.475 18 O -0.574 6.574 19 C -0.113 4.113 20 H 0.129 0.871 21 C -0.101 4.101 22 C -0.028 4.028 23 C 0.192 3.808 24 N -0.528 5.528 25 C -0.058 4.058 26 C -0.045 4.045 27 N -0.456 5.456 28 C 0.120 3.880 29 C 0.103 3.897 30 C -0.124 4.124 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.360 0.640 35 H 0.243 0.757 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.184 0.816 46 H 0.206 0.794 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.090 0.910 50 H 0.113 0.887 51 H 0.094 0.906 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 4.048 26.342 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.059 0.941 4 N -0.392 5.392 5 C -0.455 4.455 6 H 0.082 0.918 7 C -0.300 4.300 8 N -0.627 5.627 9 Si 0.950 3.050 10 H -0.222 1.222 11 H -0.207 1.207 12 H -0.203 1.203 13 C -0.100 4.100 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.332 5.332 17 C 0.313 3.687 18 O -0.453 6.453 19 C -0.135 4.135 20 H 0.146 0.854 21 C -0.139 4.139 22 C -0.067 4.067 23 C -0.071 4.071 24 N -0.247 5.247 25 C -0.204 4.204 26 C -0.178 4.178 27 N -0.139 5.139 28 C -0.003 4.003 29 C -0.018 4.018 30 C -0.162 4.162 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.193 0.807 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.201 0.799 46 H 0.223 0.777 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.108 0.892 50 H 0.131 0.869 51 H 0.113 0.887 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.165 3.703 25.040 25.405 hybrid contribution 0.381 -0.687 0.620 1.001 sum -1.784 3.016 25.661 25.899 Atomic orbital electron populations 1.22375 0.98325 1.00448 1.00407 1.20404 0.92409 0.94804 0.85629 0.94107 1.42737 1.79585 1.09763 1.07153 1.20360 1.39527 0.95162 0.90432 0.91828 1.27086 1.00144 0.97670 1.05083 1.70999 1.54165 1.09532 1.27973 0.82656 0.76774 0.73566 0.72010 1.22181 1.20728 1.20317 1.21264 0.99782 0.94349 0.94556 1.21820 1.00756 0.96200 0.96908 1.21504 1.00166 0.95389 0.83364 1.48223 1.56307 1.11877 1.16841 1.20534 0.76711 0.86637 0.84848 1.90719 1.52658 1.19527 1.82400 1.21622 0.96971 1.02793 0.92088 0.85373 1.21475 0.97338 0.98414 0.96718 1.20277 0.90901 1.00805 0.94697 1.23742 0.87598 1.03298 0.92433 1.70034 1.23111 1.19179 1.12400 1.22783 0.88349 1.07820 1.01492 1.23088 0.98610 1.06135 0.89973 1.45425 1.07048 1.46710 1.14667 1.21861 0.97222 1.01258 0.79912 1.22111 1.01853 0.78392 0.99462 1.21984 1.01690 1.00088 0.92458 0.95584 0.94240 0.90583 0.80696 0.94666 0.91794 0.92094 0.93146 0.90447 0.90500 0.89218 0.91532 0.87936 0.87563 0.79897 0.77674 0.89426 0.85981 0.89212 0.86880 0.88725 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 8.79 71.99 0.63 -4.56 16 2 C 0.18 6.30 2.72 44.99 0.12 6.43 16 3 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 4 N -0.75 -36.03 5.04 -322.94 -1.63 -37.66 16 5 C -0.32 -17.75 9.93 84.03 0.83 -16.92 16 6 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 7 C -0.11 -6.26 5.50 84.86 0.47 -5.80 16 8 N -0.98 -60.84 13.70 21.65 0.30 -60.54 16 9 Si 1.12 51.67 29.92 68.60 2.05 53.72 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 C -0.08 -2.14 2.14 -10.77 -0.02 -2.16 16 14 C -0.12 -3.31 4.81 30.67 0.15 -3.16 16 15 C 0.12 2.75 6.44 86.36 0.56 3.31 16 16 N -0.60 -10.67 2.97 -818.93 -2.43 -13.10 16 17 C 0.52 9.94 6.80 87.66 0.60 10.54 16 18 O -0.57 -15.91 15.64 -3.02 -0.05 -15.95 16 19 C -0.11 -1.37 1.71 -11.40 -0.02 -1.39 16 20 H 0.13 1.05 6.19 -2.38 -0.01 1.04 16 21 C -0.10 -1.37 4.62 30.78 0.14 -1.22 16 22 C -0.03 -0.36 6.33 30.09 0.19 -0.17 16 23 C 0.19 3.44 7.65 138.23 1.06 4.50 16 24 N -0.53 -11.76 11.24 -187.51 -2.11 -13.87 16 25 C -0.06 -1.01 11.87 83.54 0.99 -0.01 16 26 C -0.05 -0.60 11.64 83.22 0.97 0.37 16 27 N -0.46 -6.49 3.13 -513.81 -1.61 -8.10 16 28 C 0.12 1.24 6.22 86.47 0.54 1.78 16 29 C 0.10 1.23 6.02 86.36 0.52 1.75 16 30 C -0.12 -2.11 4.97 30.67 0.15 -1.96 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.36 6.46 -2.39 -0.02 1.35 16 33 H 0.08 1.94 6.46 -2.39 -0.02 1.92 16 34 H 0.36 18.13 4.87 -92.71 -0.45 17.68 16 35 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 36 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.79 6.51 -2.39 -0.02 1.77 16 38 H 0.05 1.72 6.46 -2.39 -0.02 1.70 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.04 7.00 -2.38 -0.02 2.03 16 41 H 0.09 1.24 8.11 -2.39 -0.02 1.22 16 42 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 43 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 48 H 0.12 0.68 7.84 -2.39 -0.02 0.66 16 49 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.11 0.71 5.39 -2.39 -0.01 0.69 16 51 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 52 H 0.07 1.28 6.51 -2.39 -0.02 1.26 16 Total: -1.00 -77.80 394.96 3.01 -74.79 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.62 Total: 29.38 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 7.87 Total: -8.67 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -7.48 Total: -133.27 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.05 Total: -15.95 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -77.80 3.01 -74.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.703 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds