Wall clock time and date at job start Wed Apr 1 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46501 * 109.47004 * 119.99983 * 2 1 3 5 5 C 1.36932 * 120.00086 * 274.99870 * 4 2 1 6 6 H 1.07999 * 120.00510 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00102 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99721 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47129 * 60.00073 * 9 7 5 11 11 H 1.48500 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46897 * 299.99817 * 9 7 5 13 13 C 1.52998 * 109.47092 * 240.00243 * 2 1 3 14 14 C 1.53040 * 109.45896 * 59.99710 * 13 2 1 15 15 C 1.53192 * 109.33867 * 181.36822 * 14 13 2 16 16 N 1.46940 * 108.77206 * 305.41494 * 15 14 13 17 17 C 1.34769 * 120.60693 * 233.57440 * 16 15 14 18 18 O 1.21277 * 120.00330 * 175.58517 * 17 16 15 19 19 C 1.50706 * 120.00054 * 355.59019 * 17 16 15 20 20 H 1.08998 * 109.51013 * 37.82527 * 19 17 16 21 21 C 1.53143 * 109.51385 * 157.92386 * 19 17 16 22 22 C 1.53255 * 109.50726 * 189.41163 * 21 19 17 23 23 N 1.46473 * 108.79894 * 309.65851 * 22 21 19 24 24 C 1.36320 * 127.77673 * 197.08337 * 23 22 21 25 25 C 1.34860 * 106.68640 * 179.97438 * 24 23 22 26 26 N 1.34289 * 108.07628 * 0.02562 * 25 24 23 27 27 C 1.30094 * 109.20976 * 0.02562 * 26 25 24 28 28 C 1.51058 * 127.37393 * 179.81753 * 27 26 25 29 29 C 1.46927 * 118.76225 * 53.55376 * 16 15 14 30 30 C 1.53041 * 109.45799 * 180.02562 * 13 2 1 31 31 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46954 * 299.99433 * 1 2 3 33 33 H 1.08996 * 109.47418 * 60.00361 * 1 2 3 34 34 H 0.96996 * 119.99841 * 95.00609 * 4 2 1 35 35 H 0.97003 * 120.00186 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.44662 * 300.02989 * 13 2 1 37 37 H 1.09000 * 109.49918 * 301.33376 * 14 13 2 38 38 H 1.08997 * 109.49572 * 61.40430 * 14 13 2 39 39 H 1.09003 * 109.58691 * 65.16655 * 15 14 13 40 40 H 1.08994 * 109.58798 * 185.59514 * 15 14 13 41 41 H 1.09006 * 109.46589 * 309.42327 * 21 19 17 42 42 H 1.08997 * 109.46767 * 69.40601 * 21 19 17 43 43 H 1.09000 * 109.58519 * 69.45010 * 22 21 19 44 44 H 1.08997 * 109.58919 * 189.72282 * 22 21 19 45 45 H 1.07998 * 126.65340 * 359.94170 * 24 23 22 46 46 H 1.07998 * 125.95856 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.68753 * 76.39107 * 28 27 26 48 48 H 1.09000 * 109.76309 * 315.73770 * 28 27 26 49 49 H 1.08998 * 109.58606 * 186.62027 * 29 16 15 50 50 H 1.09000 * 109.70325 * 66.27424 * 29 16 15 51 51 H 1.09000 * 109.49758 * 298.56414 * 30 13 2 52 52 H 1.08999 * 109.49632 * 58.63331 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6124 -0.6618 3.5091 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.2991 -0.6485 6.1684 12 1 3.7445 1.3931 4.9372 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0005 -2.4986 15 6 2.0135 -0.7434 -3.7473 16 7 3.4753 -0.8769 -3.6816 17 6 4.2492 -0.4579 -4.7022 18 8 5.4573 -0.4993 -4.6040 19 6 3.6134 0.0622 -5.9657 20 1 2.7246 0.6410 -5.7145 21 6 4.6108 0.9542 -6.7106 22 6 3.8970 1.6683 -7.8636 23 7 3.1593 0.6759 -8.6488 24 6 2.6625 0.8114 -9.9110 25 6 2.0637 -0.3570 -10.2189 26 7 2.1939 -1.1818 -9.1672 27 6 2.8477 -0.5712 -8.2227 28 6 3.2183 -1.1166 -6.8636 29 6 4.0773 -1.4752 -2.4823 30 6 3.5704 -0.7216 -1.2486 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2491 -1.6317 1.1526 35 1 3.2494 -2.3959 4.2417 36 1 1.6761 -1.7486 -1.2492 37 1 0.4399 0.0215 -2.4870 38 1 1.9132 1.0207 -2.5115 39 1 1.5579 -1.7330 -3.7826 40 1 1.7372 -0.1798 -4.6384 41 1 5.0203 1.6943 -6.0229 42 1 5.4197 0.3413 -7.1083 43 1 3.2025 2.4062 -7.4622 44 1 4.6321 2.1650 -8.4967 45 1 2.7342 1.6851 -10.5417 46 1 1.5661 -0.5889 -11.1490 47 1 4.0600 -1.8023 -6.9602 48 1 2.3652 -1.6393 -6.4311 49 1 5.1628 -1.3946 -2.5393 50 1 3.7922 -2.5250 -2.4127 51 1 3.9345 0.3055 -1.2740 52 1 3.9337 -1.2142 -0.3467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:20 Heat of formation + Delta-G solvation = 29.568279 kcal Electronic energy + Delta-G solvation = -31077.459790 eV Core-core repulsion = 27077.613849 eV Total energy + Delta-G solvation = -3999.845941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.65482 -40.51482 -38.22441 -36.51253 -35.48604 -33.76861 -32.84716 -31.23507 -30.77185 -30.19682 -28.95213 -28.26655 -25.80155 -24.81950 -23.86138 -23.46118 -22.52018 -21.75383 -20.94511 -19.78439 -19.37231 -18.94973 -17.63379 -17.36871 -16.92090 -16.36374 -15.88459 -15.59053 -14.98001 -14.61999 -14.56384 -14.29152 -14.14182 -14.03684 -13.95800 -13.82821 -13.75155 -13.41526 -13.07028 -12.80616 -12.55572 -12.39140 -12.29109 -12.23299 -12.05797 -11.72948 -11.61182 -11.51912 -11.15293 -11.02566 -10.87247 -10.75949 -10.38285 -10.25528 -10.22092 -10.15567 -9.90471 -9.86327 -9.78265 -9.58200 -8.91149 -8.65954 -8.64764 -6.95672 -5.77101 -3.05125 1.72699 2.38316 2.41986 2.80864 2.86585 3.42877 3.47724 3.48390 3.82920 4.02976 4.10342 4.14048 4.49061 4.55703 4.61693 4.64011 4.67853 4.80426 4.93395 4.95836 5.07208 5.12995 5.19093 5.23290 5.26934 5.36945 5.38352 5.43687 5.53852 5.55170 5.63068 5.63584 5.76041 5.89367 5.91939 5.97536 6.03268 6.06960 6.13707 6.30328 6.34087 6.45970 6.46407 6.55415 6.64564 6.80399 6.82106 6.92578 7.10423 7.29752 7.69150 7.81378 8.00994 8.41782 9.52900 10.11018 10.45601 11.45444 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.002094 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.036100 B =13369.304032 C =13711.952172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.130 4.130 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.522 3.478 18 O -0.540 6.540 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.116 4.116 22 C 0.103 3.897 23 N -0.456 5.456 24 C -0.055 4.055 25 C -0.031 4.031 26 N -0.487 5.487 27 C 0.211 3.789 28 C -0.020 4.020 29 C 0.109 3.891 30 C -0.121 4.121 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.175 0.825 46 H 0.170 0.830 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 6.359 -26.438 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.168 4.168 15 C -0.020 4.020 16 N -0.335 5.335 17 C 0.309 3.691 18 O -0.417 6.417 19 C -0.136 4.136 20 H 0.120 0.880 21 C -0.154 4.154 22 C -0.019 4.019 23 N -0.139 5.139 24 C -0.188 4.188 25 C -0.179 4.179 26 N -0.206 5.206 27 C -0.052 4.052 28 C -0.059 4.059 29 C -0.012 4.012 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.192 0.808 46 H 0.187 0.813 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.108 0.892 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.579 5.771 -26.102 26.738 hybrid contribution 0.229 1.149 0.841 1.442 sum -0.350 6.920 -25.261 26.194 Atomic orbital electron populations 1.22503 0.99574 1.00760 0.99790 1.20209 0.91541 0.95286 0.86143 0.93826 1.42396 1.78092 1.10625 1.05257 1.19161 1.36394 0.93758 0.87404 0.91433 1.24715 1.02324 0.95967 0.97973 1.69636 1.50954 1.08602 1.28967 0.86306 0.77718 0.78625 0.83765 1.21390 1.21747 1.21355 1.21380 0.95168 0.99906 0.94459 1.22028 1.01262 0.99566 0.93950 1.21917 0.79502 1.01311 0.99267 1.48183 1.07174 1.60447 1.17713 1.20173 0.87043 0.77713 0.84178 1.90708 1.14048 1.55332 1.81638 1.21462 1.00379 0.97925 0.93833 0.87990 1.21735 0.97838 0.99744 0.96091 1.22050 0.96037 0.90491 0.93310 1.45447 1.42107 1.13219 1.13168 1.22586 1.06172 1.02507 0.87566 1.22383 1.05625 0.90799 0.99133 1.70066 1.18062 1.31701 1.00733 1.23098 1.01215 0.83009 0.97846 1.20045 1.03382 0.96205 0.86309 1.21774 0.99406 0.96625 0.83423 1.21878 0.95649 1.01017 0.97359 0.93571 0.93038 0.94388 0.78313 0.93512 0.91307 0.90216 0.91643 0.90881 0.90098 0.88431 0.89505 0.89422 0.88662 0.80826 0.81284 0.88597 0.88016 0.89231 0.91360 0.92072 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.14 37.16 0.34 -2.45 16 2 C 0.18 3.26 2.47 -67.93 -0.17 3.09 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 N -0.72 -17.06 4.41 -53.42 -0.24 -17.30 16 5 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 9 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.09 -1.30 1.79 -90.58 -0.16 -1.46 16 14 C -0.13 -1.41 5.04 -26.61 -0.13 -1.55 16 15 C 0.10 0.94 6.08 -3.70 -0.02 0.91 16 16 N -0.60 -6.79 2.97 -172.76 -0.51 -7.30 16 17 C 0.52 6.00 6.80 -10.99 -0.07 5.93 16 18 O -0.54 -8.14 15.64 5.56 0.09 -8.05 16 19 C -0.11 -0.93 1.71 -91.51 -0.16 -1.09 16 20 H 0.10 0.70 6.19 -51.93 -0.32 0.38 16 21 C -0.12 -0.83 4.61 -26.53 -0.12 -0.95 16 22 C 0.10 0.57 6.98 -3.92 -0.03 0.54 16 23 N -0.46 -3.76 3.13 -113.75 -0.36 -4.12 16 24 C -0.06 -0.43 11.65 -16.76 -0.20 -0.62 16 25 C -0.03 -0.30 11.87 -17.68 -0.21 -0.51 16 26 N -0.49 -5.85 11.24 -10.61 -0.12 -5.97 16 27 C 0.21 2.15 7.65 -155.23 -1.19 0.97 16 28 C -0.02 -0.18 5.59 -27.52 -0.15 -0.33 16 29 C 0.11 1.44 6.44 -3.71 -0.02 1.42 16 30 C -0.12 -1.84 5.22 -26.61 -0.14 -1.98 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.51 6.40 -51.93 -0.33 0.18 16 34 H 0.38 9.65 7.58 -40.82 -0.31 9.34 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.80 6.36 -51.93 -0.33 0.47 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.57 5.40 -51.93 -0.28 0.29 16 41 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 48 H 0.10 0.81 7.91 -51.93 -0.41 0.40 16 49 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.09 1.67 7.40 -51.93 -0.38 1.29 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -33.54 401.99 -10.67 -44.21 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.61 Total: 7.22 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.68 Total: -5.05 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.50 Total: -61.52 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.54 -10.67 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.779 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds