Wall clock time and date at job start Wed Apr 1 2020 04:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46501 * 109.47004 * 119.99983 * 2 1 3 5 5 C 1.36932 * 120.00086 * 274.99870 * 4 2 1 6 6 H 1.07999 * 120.00510 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00102 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99721 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47129 * 60.00073 * 9 7 5 11 11 H 1.48500 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46897 * 299.99817 * 9 7 5 13 13 C 1.52998 * 109.47092 * 240.00243 * 2 1 3 14 14 C 1.53040 * 109.45896 * 59.99710 * 13 2 1 15 15 C 1.53192 * 109.33867 * 181.36822 * 14 13 2 16 16 N 1.46940 * 108.77206 * 305.41494 * 15 14 13 17 17 C 1.34769 * 120.60693 * 233.57440 * 16 15 14 18 18 O 1.21277 * 120.00330 * 175.58517 * 17 16 15 19 19 C 1.50706 * 120.00054 * 355.59019 * 17 16 15 20 20 H 1.08998 * 109.51013 * 37.82527 * 19 17 16 21 21 C 1.53143 * 109.51385 * 157.92386 * 19 17 16 22 22 C 1.53255 * 109.50726 * 189.41163 * 21 19 17 23 23 N 1.46473 * 108.79894 * 309.65851 * 22 21 19 24 24 C 1.36320 * 127.77673 * 197.08337 * 23 22 21 25 25 C 1.34860 * 106.68640 * 179.97438 * 24 23 22 26 26 N 1.34289 * 108.07628 * 0.02562 * 25 24 23 27 27 C 1.30094 * 109.20976 * 0.02562 * 26 25 24 28 28 C 1.51058 * 127.37393 * 179.81753 * 27 26 25 29 29 C 1.46927 * 118.76225 * 53.55376 * 16 15 14 30 30 C 1.53041 * 109.45799 * 180.02562 * 13 2 1 31 31 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46954 * 299.99433 * 1 2 3 33 33 H 1.08996 * 109.47418 * 60.00361 * 1 2 3 34 34 H 0.96996 * 119.99841 * 95.00609 * 4 2 1 35 35 H 0.97003 * 120.00186 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.44662 * 300.02989 * 13 2 1 37 37 H 1.09000 * 109.49918 * 301.33376 * 14 13 2 38 38 H 1.08997 * 109.49572 * 61.40430 * 14 13 2 39 39 H 1.09003 * 109.58691 * 65.16655 * 15 14 13 40 40 H 1.08994 * 109.58798 * 185.59514 * 15 14 13 41 41 H 1.09006 * 109.46589 * 309.42327 * 21 19 17 42 42 H 1.08997 * 109.46767 * 69.40601 * 21 19 17 43 43 H 1.09000 * 109.58519 * 69.45010 * 22 21 19 44 44 H 1.08997 * 109.58919 * 189.72282 * 22 21 19 45 45 H 1.07998 * 126.65340 * 359.94170 * 24 23 22 46 46 H 1.07998 * 125.95856 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.68753 * 76.39107 * 28 27 26 48 48 H 1.09000 * 109.76309 * 315.73770 * 28 27 26 49 49 H 1.08998 * 109.58606 * 186.62027 * 29 16 15 50 50 H 1.09000 * 109.70325 * 66.27424 * 29 16 15 51 51 H 1.09000 * 109.49758 * 298.56414 * 30 13 2 52 52 H 1.08999 * 109.49632 * 58.63331 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6124 -0.6618 3.5091 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.2991 -0.6485 6.1684 12 1 3.7445 1.3931 4.9372 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0005 -2.4986 15 6 2.0135 -0.7434 -3.7473 16 7 3.4753 -0.8769 -3.6816 17 6 4.2492 -0.4579 -4.7022 18 8 5.4573 -0.4993 -4.6040 19 6 3.6134 0.0622 -5.9657 20 1 2.7246 0.6410 -5.7145 21 6 4.6108 0.9542 -6.7106 22 6 3.8970 1.6683 -7.8636 23 7 3.1593 0.6759 -8.6488 24 6 2.6625 0.8114 -9.9110 25 6 2.0637 -0.3570 -10.2189 26 7 2.1939 -1.1818 -9.1672 27 6 2.8477 -0.5712 -8.2227 28 6 3.2183 -1.1166 -6.8636 29 6 4.0773 -1.4752 -2.4823 30 6 3.5704 -0.7216 -1.2486 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2491 -1.6317 1.1526 35 1 3.2494 -2.3959 4.2417 36 1 1.6761 -1.7486 -1.2492 37 1 0.4399 0.0215 -2.4870 38 1 1.9132 1.0207 -2.5115 39 1 1.5579 -1.7330 -3.7826 40 1 1.7372 -0.1798 -4.6384 41 1 5.0203 1.6943 -6.0229 42 1 5.4197 0.3413 -7.1083 43 1 3.2025 2.4062 -7.4622 44 1 4.6321 2.1650 -8.4967 45 1 2.7342 1.6851 -10.5417 46 1 1.5661 -0.5889 -11.1490 47 1 4.0600 -1.8023 -6.9602 48 1 2.3652 -1.6393 -6.4311 49 1 5.1628 -1.3946 -2.5393 50 1 3.7922 -2.5250 -2.4127 51 1 3.9345 0.3055 -1.2740 52 1 3.9337 -1.2142 -0.3467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664443452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:19 Heat of formation + Delta-G solvation = 9.783459 kcal Electronic energy + Delta-G solvation = -31078.317724 eV Core-core repulsion = 27077.613849 eV Total energy + Delta-G solvation = -4000.703875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.27690 -41.44779 -39.35905 -37.25538 -36.85836 -34.70724 -34.28201 -32.40577 -32.17532 -30.80502 -29.90671 -29.59181 -26.87933 -25.83187 -25.31271 -24.31218 -23.55261 -22.40521 -22.07086 -21.09449 -20.15848 -19.82396 -19.11758 -18.29020 -17.88385 -17.14241 -16.76372 -16.66242 -16.35507 -15.67780 -15.55882 -15.26949 -15.23235 -15.21163 -14.85677 -14.65340 -14.62102 -14.46037 -14.22847 -14.05949 -13.70052 -13.50278 -13.36117 -13.02918 -12.94918 -12.90064 -12.81024 -12.73625 -12.33662 -12.25827 -12.23303 -12.16805 -12.01561 -11.82046 -11.46035 -11.27639 -11.23004 -10.94089 -10.86060 -10.73339 -10.51434 -9.65287 -9.27211 -8.94200 -7.90972 -5.17004 1.12736 1.46560 1.48465 1.49841 1.54412 1.87024 1.93742 2.18446 2.57661 3.13377 3.42495 3.44687 3.49222 3.57208 3.74185 3.82499 3.85672 4.01780 4.05396 4.15214 4.17162 4.25046 4.27428 4.38317 4.43416 4.52949 4.58408 4.58617 4.60787 4.65562 4.68634 4.78181 4.82290 4.85331 4.89319 4.95071 4.95989 5.03052 5.07718 5.13115 5.18626 5.27696 5.34504 5.37722 5.51509 5.53284 5.65329 5.71282 5.88084 6.23920 6.31984 6.40412 7.09844 7.17146 7.38034 8.17849 8.39249 9.32154 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.002094 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.036100 B =13369.304032 C =13711.952172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.034 0.966 4 N -0.734 5.734 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.078 4.078 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.281 1.281 13 C -0.080 4.080 14 C -0.122 4.122 15 C 0.103 3.897 16 N -0.602 5.602 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.101 4.101 20 H 0.126 0.874 21 C -0.114 4.114 22 C 0.105 3.895 23 N -0.456 5.456 24 C -0.041 4.041 25 C -0.062 4.062 26 N -0.527 5.527 27 C 0.192 3.808 28 C -0.014 4.014 29 C 0.118 3.882 30 C -0.111 4.111 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.210 0.790 46 H 0.183 0.817 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.048 0.952 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 8.629 -28.778 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.052 0.948 4 N -0.374 5.374 5 C -0.363 4.363 6 H 0.088 0.912 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.207 1.207 13 C -0.099 4.099 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.334 5.334 17 C 0.309 3.691 18 O -0.461 6.461 19 C -0.122 4.122 20 H 0.143 0.857 21 C -0.153 4.153 22 C -0.015 4.015 23 N -0.139 5.139 24 C -0.174 4.174 25 C -0.209 4.209 26 N -0.247 5.247 27 C -0.070 4.070 28 C -0.054 4.054 29 C -0.005 4.005 30 C -0.150 4.150 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.227 0.773 46 H 0.200 0.800 47 H 0.100 0.900 48 H 0.127 0.873 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.066 0.934 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.199 8.089 -28.476 29.684 hybrid contribution 0.733 0.482 1.483 1.723 sum -1.466 8.571 -26.992 28.359 Atomic orbital electron populations 1.22351 0.97680 1.00845 1.00706 1.20481 0.92710 0.94655 0.85829 0.94810 1.42598 1.78346 1.10237 1.06181 1.19513 1.34304 0.93930 0.88519 0.91165 1.25455 1.03507 0.96869 1.01163 1.69789 1.52899 1.10028 1.29244 0.85329 0.77817 0.77342 0.80011 1.20608 1.22459 1.20749 1.21265 0.94178 0.99904 0.94588 1.21987 1.02402 0.99204 0.92420 1.22119 0.77726 1.02458 0.99555 1.48241 1.08304 1.59963 1.16854 1.20773 0.86555 0.76780 0.84951 1.90694 1.16042 1.56926 1.82461 1.21411 1.01117 0.97937 0.91770 0.85651 1.21703 0.97321 0.99497 0.96731 1.22239 0.96723 0.89852 0.92727 1.45650 1.41705 1.13033 1.13482 1.23132 1.04155 1.02851 0.87300 1.22793 1.07062 0.91559 0.99493 1.69991 1.19359 1.33313 1.01994 1.23175 1.01852 0.83979 0.98029 1.19975 1.03105 0.96117 0.86170 1.21500 0.98518 0.96864 0.83592 1.21698 0.96542 0.99927 0.96807 0.93869 0.95353 0.90200 0.79608 0.94280 0.91414 0.88114 0.91485 0.89532 0.86929 0.88089 0.91336 0.87089 0.86507 0.77328 0.79992 0.90038 0.87258 0.90975 0.90605 0.93351 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 9.14 71.98 0.66 -4.30 16 2 C 0.17 6.17 2.47 44.99 0.11 6.28 16 3 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 4 N -0.73 -35.35 4.41 -322.93 -1.42 -36.77 16 5 C -0.23 -12.55 9.93 84.04 0.83 -11.72 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 7 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 8 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 9 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C -0.08 -2.23 1.79 -10.77 -0.02 -2.25 16 14 C -0.12 -2.25 5.04 30.67 0.15 -2.09 16 15 C 0.10 1.52 6.08 86.36 0.52 2.04 16 16 N -0.60 -12.64 2.97 -818.88 -2.43 -15.07 16 17 C 0.52 11.35 6.80 87.66 0.60 11.94 16 18 O -0.58 -17.62 15.64 -3.02 -0.05 -17.67 16 19 C -0.10 -1.40 1.71 -11.37 -0.02 -1.42 16 20 H 0.13 1.17 6.19 -2.39 -0.01 1.16 16 21 C -0.11 -1.39 4.61 30.73 0.14 -1.25 16 22 C 0.11 0.77 6.98 86.47 0.60 1.37 16 23 N -0.46 -6.16 3.13 -513.80 -1.61 -7.77 16 24 C -0.04 -0.50 11.65 83.22 0.97 0.47 16 25 C -0.06 -1.08 11.87 83.54 0.99 -0.09 16 26 N -0.53 -12.11 11.24 -187.49 -2.11 -14.21 16 27 C 0.19 3.59 7.65 138.24 1.06 4.64 16 28 C -0.01 -0.23 5.59 30.08 0.17 -0.06 16 29 C 0.12 3.13 6.44 86.36 0.56 3.69 16 30 C -0.11 -3.46 5.22 30.67 0.16 -3.30 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.86 6.40 -2.39 -0.02 1.84 16 34 H 0.37 19.40 7.58 -92.71 -0.70 18.70 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.51 6.36 -2.39 -0.02 1.49 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.02 5.40 -2.39 -0.01 1.01 16 41 H 0.10 1.18 8.12 -2.38 -0.02 1.16 16 42 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 43 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 46 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 47 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 48 H 0.11 1.51 7.91 -2.39 -0.02 1.49 16 49 H 0.07 2.18 7.00 -2.39 -0.02 2.16 16 50 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.05 2.09 7.40 -2.39 -0.02 2.08 16 Total: -1.00 -76.38 401.99 2.86 -73.52 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.21 Total: 28.31 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 7.96 Total: -0.01 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -7.29 Total: -132.44 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.38 2.86 -73.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.306 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds