Wall clock time and date at job start Wed Apr 1 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46928 * 2 1 4 4 N 1.46500 * 109.46913 * 119.99818 * 2 1 3 5 5 C 1.36942 * 119.99707 * 275.00370 * 4 2 1 6 6 H 1.07999 * 120.00075 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99643 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00215 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47593 * 119.99519 * 9 7 5 12 12 H 1.48496 * 109.47317 * 239.99731 * 9 7 5 13 13 C 1.52998 * 109.47228 * 239.99950 * 2 1 3 14 14 C 1.53036 * 109.46201 * 64.99972 * 13 2 1 15 15 C 1.53197 * 109.33983 * 178.59868 * 14 13 2 16 16 N 1.46995 * 108.73869 * 54.62156 * 15 14 13 17 17 C 1.34777 * 120.61078 * 126.38528 * 16 15 14 18 18 O 1.21284 * 119.99200 * 175.33559 * 17 16 15 19 19 C 1.50693 * 120.00572 * 355.33893 * 17 16 15 20 20 H 1.09006 * 109.50583 * 35.23666 * 19 17 16 21 21 C 1.53145 * 109.51102 * 275.10174 * 19 17 16 22 22 C 1.53255 * 109.50360 * 170.58714 * 21 19 17 23 23 N 1.46478 * 108.79603 * 50.36546 * 22 21 19 24 24 C 1.36315 * 127.77434 * 162.85248 * 23 22 21 25 25 C 1.34858 * 106.68348 * 180.10557 * 24 23 22 26 26 N 1.34288 * 108.07596 * 359.97438 * 25 24 23 27 27 C 1.30101 * 109.21038 * 359.96681 * 26 25 24 28 28 C 1.51046 * 127.38950 * 180.09829 * 27 26 25 29 29 C 1.46924 * 118.75616 * 306.41226 * 16 15 14 30 30 C 1.53045 * 109.45887 * 304.92981 * 13 2 1 31 31 H 1.09000 * 109.46855 * 60.00357 * 1 2 3 32 32 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47270 * 300.00415 * 1 2 3 34 34 H 0.96997 * 119.99951 * 94.99763 * 4 2 1 35 35 H 0.96995 * 119.99704 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.45814 * 184.97544 * 13 2 1 37 37 H 1.09003 * 109.49811 * 298.57015 * 14 13 2 38 38 H 1.09000 * 109.49628 * 58.63053 * 14 13 2 39 39 H 1.08997 * 109.58598 * 174.44103 * 15 14 13 40 40 H 1.08999 * 109.58295 * 294.86560 * 15 14 13 41 41 H 1.08999 * 109.46593 * 290.59408 * 21 19 17 42 42 H 1.09003 * 109.46825 * 50.57524 * 21 19 17 43 43 H 1.08992 * 109.57013 * 290.57293 * 22 21 19 44 44 H 1.09008 * 109.59492 * 170.16130 * 22 21 19 45 45 H 1.07993 * 126.65292 * 0.10689 * 24 23 22 46 46 H 1.07997 * 125.95833 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.71740 * 44.35049 * 28 27 26 48 48 H 1.09001 * 109.74460 * 283.73191 * 28 27 26 49 49 H 1.09004 * 109.58590 * 293.82296 * 29 16 15 50 50 H 1.08997 * 109.70654 * 173.45985 * 29 16 15 51 51 H 1.08995 * 109.50125 * 301.34267 * 30 13 2 52 52 H 1.09002 * 109.49642 * 61.40453 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6122 -0.6616 3.5091 8 7 2.9253 -1.9387 3.4501 9 14 2.7911 0.2704 5.1180 10 1 2.3771 1.6829 4.9205 11 1 1.9308 -0.3579 6.1525 12 1 4.2081 0.2276 5.5599 13 6 2.0401 -0.7212 -1.2492 14 6 1.6351 0.0693 -2.4954 15 6 2.1771 -0.6367 -3.7424 16 7 1.7132 -2.0315 -3.7345 17 6 1.0633 -2.5445 -4.7980 18 8 0.7602 -3.7188 -4.8146 19 6 0.7134 -1.6594 -5.9663 20 1 1.5029 -0.9225 -6.1139 21 6 -0.6107 -0.9425 -5.6863 22 6 -0.8497 0.1273 -6.7573 23 7 -0.6760 -0.4805 -8.0786 24 6 -1.0968 0.0027 -9.2818 25 6 -0.7155 -0.8942 -10.2140 26 7 -0.0777 -1.8979 -9.5902 27 6 -0.0486 -1.6577 -8.3118 28 6 0.5679 -2.5144 -7.2314 29 6 1.9706 -2.8553 -2.5456 30 6 1.4310 -2.1239 -1.3125 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6317 1.1527 35 1 3.2485 -2.3958 4.2421 36 1 3.1264 -0.7989 -1.2055 37 1 0.5481 0.1260 -2.5530 38 1 2.0493 1.0759 -2.4383 39 1 1.8089 -0.1333 -4.6363 40 1 3.2668 -0.6141 -3.7304 41 1 -1.4264 -1.6653 -5.7066 42 1 -0.5678 -0.4707 -4.7047 43 1 -0.1317 0.9376 -6.6305 44 1 -1.8635 0.5170 -6.6649 45 1 -1.6316 0.9248 -9.4549 46 1 -0.8924 -0.8185 -11.2767 47 1 1.5486 -2.8639 -7.5540 48 1 -0.0773 -3.3684 -7.0256 49 1 3.0435 -3.0136 -2.4361 50 1 1.4680 -3.8170 -2.6489 51 1 1.7004 -2.6784 -0.4136 52 1 0.3459 -2.0466 -1.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:27 Heat of formation + Delta-G solvation = 30.903800 kcal Electronic energy + Delta-G solvation = -31252.216720 eV Core-core repulsion = 27252.428692 eV Total energy + Delta-G solvation = -3999.788029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.63486 -40.58240 -38.33580 -36.59488 -35.53240 -33.61119 -32.95407 -31.26307 -30.81163 -30.10407 -28.97222 -28.22160 -25.79599 -24.85294 -23.90546 -23.69374 -22.64745 -21.78830 -21.41982 -19.78816 -19.15836 -18.51908 -17.60157 -17.40298 -17.07296 -16.24710 -15.99837 -15.41171 -14.96475 -14.89438 -14.49628 -14.46097 -14.33483 -14.10242 -14.01657 -13.81077 -13.68524 -13.24197 -13.17320 -12.96232 -12.70584 -12.58380 -12.26951 -12.16830 -12.10308 -11.65161 -11.59540 -11.53882 -11.32501 -11.13109 -10.89433 -10.68001 -10.47169 -10.33484 -10.22868 -10.11427 -9.89872 -9.87970 -9.74996 -9.59279 -8.95639 -8.71364 -8.61411 -6.99247 -5.80468 -3.08749 1.75245 2.34537 2.44652 2.75464 2.90169 3.39709 3.45380 3.47682 3.83680 4.04242 4.06331 4.10776 4.48236 4.53889 4.60770 4.63575 4.66375 4.81716 4.84511 4.90186 5.00011 5.13739 5.17116 5.17336 5.29254 5.30168 5.34599 5.41270 5.51448 5.54105 5.58866 5.68670 5.72234 5.79284 5.87223 5.89007 5.99429 6.03575 6.11655 6.20521 6.21598 6.40344 6.47883 6.48963 6.61044 6.69960 6.84872 6.86294 7.08822 7.25233 7.66904 7.84860 7.97769 8.38712 9.49858 10.08130 10.42156 11.42304 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028024 B = 0.002096 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.907053 B =13358.739370 C =13965.471201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.103 3.897 16 N -0.604 5.604 17 C 0.522 3.478 18 O -0.537 6.537 19 C -0.113 4.113 20 H 0.101 0.899 21 C -0.125 4.125 22 C 0.106 3.894 23 N -0.458 5.458 24 C -0.057 4.057 25 C -0.032 4.032 26 N -0.489 5.489 27 C 0.213 3.787 28 C -0.018 4.018 29 C 0.110 3.890 30 C -0.127 4.127 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.174 0.826 46 H 0.169 0.831 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 6.024 -23.847 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.110 4.110 14 C -0.167 4.167 15 C -0.020 4.020 16 N -0.336 5.336 17 C 0.309 3.691 18 O -0.414 6.414 19 C -0.135 4.135 20 H 0.119 0.881 21 C -0.163 4.163 22 C -0.016 4.016 23 N -0.142 5.142 24 C -0.190 4.190 25 C -0.180 4.180 26 N -0.207 5.207 27 C -0.050 4.050 28 C -0.057 4.057 29 C -0.011 4.011 30 C -0.165 4.165 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.192 0.808 46 H 0.187 0.813 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.103 0.897 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.351 4.919 -23.941 25.253 hybrid contribution -0.230 1.182 1.371 1.824 sum -6.581 6.101 -22.570 24.289 Atomic orbital electron populations 1.22539 0.99661 1.00879 0.99591 1.20187 0.91696 0.95118 0.86142 0.93700 1.42469 1.78115 1.10732 1.05319 1.19271 1.36271 0.93841 0.87405 0.91249 1.24731 1.02293 0.95988 0.98044 1.69660 1.51050 1.08640 1.28774 0.86150 0.77298 0.78768 0.84160 1.20633 1.21936 1.21923 1.21406 1.00555 0.94604 0.94445 1.22014 1.01512 0.99200 0.93994 1.21907 0.99784 0.81039 0.99247 1.48153 1.56385 1.12952 1.16157 1.20182 0.77572 0.88044 0.83289 1.90714 1.53916 1.16655 1.80128 1.21442 0.99348 0.98473 0.94204 0.88099 1.21858 0.97158 0.98135 0.99180 1.21990 1.03804 0.96347 0.79463 1.45445 1.42850 1.18518 1.07354 1.22568 1.08728 1.03152 0.84507 1.22382 1.03471 0.92395 0.99711 1.70072 1.20541 1.26841 1.03293 1.23261 1.00560 0.87765 0.93384 1.20031 1.02496 0.95803 0.87371 1.21736 1.00997 0.94850 0.83542 1.21997 1.00827 0.96403 0.97262 0.94658 0.93221 0.93153 0.78214 0.93576 0.90895 0.91273 0.90617 0.90131 0.90966 0.89585 0.88306 0.89280 0.88571 0.80840 0.81333 0.88380 0.87650 0.91368 0.89188 0.89687 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.76 37.16 0.33 -2.41 16 2 C 0.18 3.16 2.67 -67.93 -0.18 2.98 16 3 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 4 N -0.72 -16.94 5.06 -53.42 -0.27 -17.21 16 5 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 9 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.09 -1.25 2.08 -90.58 -0.19 -1.44 16 14 C -0.13 -1.26 5.08 -26.61 -0.14 -1.39 16 15 C 0.10 0.85 6.27 -3.67 -0.02 0.82 16 16 N -0.60 -6.40 2.97 -172.71 -0.51 -6.91 16 17 C 0.52 5.83 6.79 -10.99 -0.07 5.76 16 18 O -0.54 -8.02 15.31 5.55 0.09 -7.94 16 19 C -0.11 -0.90 1.71 -91.50 -0.16 -1.06 16 20 H 0.10 0.65 6.27 -51.93 -0.33 0.33 16 21 C -0.13 -0.79 5.08 -26.52 -0.13 -0.92 16 22 C 0.11 0.54 6.98 -3.92 -0.03 0.52 16 23 N -0.46 -3.80 3.13 -113.75 -0.36 -4.16 16 24 C -0.06 -0.45 11.65 -16.76 -0.20 -0.64 16 25 C -0.03 -0.31 11.87 -17.68 -0.21 -0.52 16 26 N -0.49 -6.11 11.24 -10.62 -0.12 -6.23 16 27 C 0.21 2.27 7.65 -155.23 -1.19 1.08 16 28 C -0.02 -0.17 5.37 -27.52 -0.15 -0.32 16 29 C 0.11 1.38 6.42 -3.71 -0.02 1.35 16 30 C -0.13 -1.76 4.71 -26.61 -0.13 -1.88 16 31 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 32 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.38 9.52 6.35 -40.82 -0.26 9.26 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.66 6.64 -51.93 -0.34 0.31 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.46 5.38 -51.93 -0.28 0.18 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 42 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.35 8.14 -51.92 -0.42 -0.08 16 45 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.11 1.15 7.47 -51.93 -0.39 0.77 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 1.23 7.04 -51.93 -0.37 0.86 16 51 H 0.08 1.39 6.74 -51.93 -0.35 1.04 16 52 H 0.07 0.95 6.43 -51.93 -0.33 0.62 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -33.85 397.15 -10.57 -44.42 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.36 Total: 6.88 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.73 Total: -5.03 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.54 Total: -61.23 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.85 -10.57 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.327 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds