Wall clock time and date at job start Wed Apr 1 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46928 * 2 1 4 4 N 1.46500 * 109.46913 * 119.99818 * 2 1 3 5 5 C 1.36942 * 119.99707 * 275.00370 * 4 2 1 6 6 H 1.07999 * 120.00075 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99643 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00215 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47593 * 119.99519 * 9 7 5 12 12 H 1.48496 * 109.47317 * 239.99731 * 9 7 5 13 13 C 1.52998 * 109.47228 * 239.99950 * 2 1 3 14 14 C 1.53036 * 109.46201 * 64.99972 * 13 2 1 15 15 C 1.53197 * 109.33983 * 178.59868 * 14 13 2 16 16 N 1.46995 * 108.73869 * 54.62156 * 15 14 13 17 17 C 1.34777 * 120.61078 * 126.38528 * 16 15 14 18 18 O 1.21284 * 119.99200 * 175.33559 * 17 16 15 19 19 C 1.50693 * 120.00572 * 355.33893 * 17 16 15 20 20 H 1.09006 * 109.50583 * 35.23666 * 19 17 16 21 21 C 1.53145 * 109.51102 * 275.10174 * 19 17 16 22 22 C 1.53255 * 109.50360 * 170.58714 * 21 19 17 23 23 N 1.46478 * 108.79603 * 50.36546 * 22 21 19 24 24 C 1.36315 * 127.77434 * 162.85248 * 23 22 21 25 25 C 1.34858 * 106.68348 * 180.10557 * 24 23 22 26 26 N 1.34288 * 108.07596 * 359.97438 * 25 24 23 27 27 C 1.30101 * 109.21038 * 359.96681 * 26 25 24 28 28 C 1.51046 * 127.38950 * 180.09829 * 27 26 25 29 29 C 1.46924 * 118.75616 * 306.41226 * 16 15 14 30 30 C 1.53045 * 109.45887 * 304.92981 * 13 2 1 31 31 H 1.09000 * 109.46855 * 60.00357 * 1 2 3 32 32 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47270 * 300.00415 * 1 2 3 34 34 H 0.96997 * 119.99951 * 94.99763 * 4 2 1 35 35 H 0.96995 * 119.99704 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.45814 * 184.97544 * 13 2 1 37 37 H 1.09003 * 109.49811 * 298.57015 * 14 13 2 38 38 H 1.09000 * 109.49628 * 58.63053 * 14 13 2 39 39 H 1.08997 * 109.58598 * 174.44103 * 15 14 13 40 40 H 1.08999 * 109.58295 * 294.86560 * 15 14 13 41 41 H 1.08999 * 109.46593 * 290.59408 * 21 19 17 42 42 H 1.09003 * 109.46825 * 50.57524 * 21 19 17 43 43 H 1.08992 * 109.57013 * 290.57293 * 22 21 19 44 44 H 1.09008 * 109.59492 * 170.16130 * 22 21 19 45 45 H 1.07993 * 126.65292 * 0.10689 * 24 23 22 46 46 H 1.07997 * 125.95833 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.71740 * 44.35049 * 28 27 26 48 48 H 1.09001 * 109.74460 * 283.73191 * 28 27 26 49 49 H 1.09004 * 109.58590 * 293.82296 * 29 16 15 50 50 H 1.08997 * 109.70654 * 173.45985 * 29 16 15 51 51 H 1.08995 * 109.50125 * 301.34267 * 30 13 2 52 52 H 1.09002 * 109.49642 * 61.40453 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6122 -0.6616 3.5091 8 7 2.9253 -1.9387 3.4501 9 14 2.7911 0.2704 5.1180 10 1 2.3771 1.6829 4.9205 11 1 1.9308 -0.3579 6.1525 12 1 4.2081 0.2276 5.5599 13 6 2.0401 -0.7212 -1.2492 14 6 1.6351 0.0693 -2.4954 15 6 2.1771 -0.6367 -3.7424 16 7 1.7132 -2.0315 -3.7345 17 6 1.0633 -2.5445 -4.7980 18 8 0.7602 -3.7188 -4.8146 19 6 0.7134 -1.6594 -5.9663 20 1 1.5029 -0.9225 -6.1139 21 6 -0.6107 -0.9425 -5.6863 22 6 -0.8497 0.1273 -6.7573 23 7 -0.6760 -0.4805 -8.0786 24 6 -1.0968 0.0027 -9.2818 25 6 -0.7155 -0.8942 -10.2140 26 7 -0.0777 -1.8979 -9.5902 27 6 -0.0486 -1.6577 -8.3118 28 6 0.5679 -2.5144 -7.2314 29 6 1.9706 -2.8553 -2.5456 30 6 1.4310 -2.1239 -1.3125 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6317 1.1527 35 1 3.2485 -2.3958 4.2421 36 1 3.1264 -0.7989 -1.2055 37 1 0.5481 0.1260 -2.5530 38 1 2.0493 1.0759 -2.4383 39 1 1.8089 -0.1333 -4.6363 40 1 3.2668 -0.6141 -3.7304 41 1 -1.4264 -1.6653 -5.7066 42 1 -0.5678 -0.4707 -4.7047 43 1 -0.1317 0.9376 -6.6305 44 1 -1.8635 0.5170 -6.6649 45 1 -1.6316 0.9248 -9.4549 46 1 -0.8924 -0.8185 -11.2767 47 1 1.5486 -2.8639 -7.5540 48 1 -0.0773 -3.3684 -7.0256 49 1 3.0435 -3.0136 -2.4361 50 1 1.4680 -3.8170 -2.6489 51 1 1.7004 -2.6784 -0.4136 52 1 0.3459 -2.0466 -1.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664443454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:26 Heat of formation + Delta-G solvation = 10.350548 kcal Electronic energy + Delta-G solvation = -31253.107976 eV Core-core repulsion = 27252.428692 eV Total energy + Delta-G solvation = -4000.679284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.27214 -41.47548 -39.43094 -37.27381 -36.86902 -34.64730 -34.24585 -32.34969 -32.15255 -30.76338 -29.90289 -29.50222 -26.86547 -25.89491 -25.36759 -24.44050 -23.55142 -22.71100 -22.27986 -20.72229 -19.97011 -19.52534 -19.20694 -18.23383 -17.95911 -17.10042 -16.66134 -16.65358 -16.23502 -15.91146 -15.58846 -15.43318 -15.23659 -15.09134 -14.98933 -14.69460 -14.65934 -14.28341 -14.20398 -14.04492 -13.76835 -13.56515 -13.23149 -13.03684 -12.89528 -12.87826 -12.80585 -12.73548 -12.57892 -12.21979 -12.18533 -12.09173 -11.94161 -11.70690 -11.53854 -11.28063 -11.08841 -10.94246 -10.86503 -10.70540 -10.50737 -9.65667 -9.25892 -8.94796 -7.91385 -5.17727 1.13087 1.47381 1.47727 1.51719 1.57216 1.89893 1.91619 2.18842 2.57987 3.17656 3.39877 3.42660 3.51797 3.58253 3.77542 3.83043 3.95008 4.01743 4.05811 4.13874 4.16939 4.28105 4.30287 4.39554 4.45673 4.50023 4.57618 4.60442 4.64148 4.69474 4.72279 4.75517 4.79599 4.85247 4.92027 4.94411 4.95867 5.06316 5.08052 5.12479 5.18557 5.28462 5.37692 5.38550 5.48532 5.55311 5.64609 5.76637 5.88242 6.25697 6.32355 6.41311 7.11142 7.18399 7.38128 8.19116 8.39025 9.32450 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028024 B = 0.002096 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.907053 B =13358.739370 C =13965.471201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.045 0.955 4 N -0.738 5.738 5 C -0.229 4.229 6 H 0.075 0.925 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.297 1.297 13 C -0.082 4.082 14 C -0.121 4.121 15 C 0.102 3.898 16 N -0.601 5.601 17 C 0.521 3.479 18 O -0.583 6.583 19 C -0.099 4.099 20 H 0.128 0.872 21 C -0.122 4.122 22 C 0.104 3.896 23 N -0.455 5.455 24 C -0.038 4.038 25 C -0.065 4.065 26 N -0.533 5.533 27 C 0.192 3.808 28 C -0.014 4.014 29 C 0.117 3.883 30 C -0.116 4.116 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.213 0.787 46 H 0.182 0.818 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.050 0.950 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 9.944 -25.433 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.063 0.937 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.093 0.907 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.226 1.226 12 H -0.224 1.224 13 C -0.101 4.101 14 C -0.159 4.159 15 C -0.019 4.019 16 N -0.332 5.332 17 C 0.310 3.690 18 O -0.463 6.463 19 C -0.121 4.121 20 H 0.145 0.855 21 C -0.160 4.160 22 C -0.016 4.016 23 N -0.138 5.138 24 C -0.172 4.172 25 C -0.212 4.212 26 N -0.253 5.253 27 C -0.071 4.071 28 C -0.053 4.053 29 C -0.005 4.005 30 C -0.155 4.155 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.229 0.771 46 H 0.199 0.801 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.069 0.931 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.291 8.915 -25.550 28.026 hybrid contribution 0.012 -0.027 1.783 1.783 sum -7.279 8.888 -23.767 26.398 Atomic orbital electron populations 1.22386 0.98150 1.00548 1.00525 1.20492 0.92580 0.94949 0.85692 0.93683 1.42740 1.78316 1.10441 1.06409 1.19659 1.33871 0.94094 0.88477 0.90690 1.25491 1.03620 0.96868 1.01311 1.69816 1.53176 1.10184 1.29102 0.85161 0.76590 0.78306 0.80280 1.18927 1.22628 1.22402 1.21273 0.99470 0.94498 0.94859 1.21981 1.02460 0.99467 0.91977 1.22140 1.00377 0.79322 1.00092 1.48199 1.56011 1.13864 1.15174 1.20763 0.76588 0.87810 0.83884 1.90703 1.55635 1.18924 1.81043 1.21394 1.01322 0.97910 0.91450 0.85452 1.21869 0.95189 0.98138 1.00787 1.22303 1.06180 0.96057 0.77080 1.45668 1.41700 1.17684 1.08730 1.23138 1.06923 1.03436 0.83685 1.22800 1.04591 0.92804 1.01043 1.69981 1.21997 1.28638 1.04713 1.23199 1.01840 0.89058 0.92984 1.19895 1.01526 0.95543 0.88349 1.21475 1.00616 0.94445 0.84010 1.21834 1.00706 0.96495 0.96436 0.90395 0.94197 0.95458 0.79551 0.94335 0.92341 0.90016 0.88546 0.86238 0.90313 0.91344 0.86341 0.86332 0.86250 0.77053 0.80089 0.89176 0.89997 0.91392 0.90899 0.93126 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 8.76 71.98 0.63 -4.19 16 2 C 0.17 5.82 2.67 44.99 0.12 5.94 16 3 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 4 N -0.74 -34.91 5.06 -322.94 -1.63 -36.54 16 5 C -0.23 -12.22 9.93 84.03 0.83 -11.38 16 6 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 7 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 8 N -0.97 -58.86 13.06 21.65 0.28 -58.57 16 9 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 13 C -0.08 -2.12 2.08 -10.77 -0.02 -2.14 16 14 C -0.12 -1.82 5.08 30.67 0.16 -1.67 16 15 C 0.10 1.24 6.27 86.35 0.54 1.78 16 16 N -0.60 -11.53 2.97 -818.73 -2.43 -13.96 16 17 C 0.52 10.96 6.79 87.65 0.60 11.55 16 18 O -0.58 -17.82 15.31 -3.04 -0.05 -17.87 16 19 C -0.10 -1.33 1.71 -11.37 -0.02 -1.35 16 20 H 0.13 1.05 6.27 -2.38 -0.01 1.03 16 21 C -0.12 -1.08 5.08 30.73 0.16 -0.92 16 22 C 0.10 0.54 6.98 86.47 0.60 1.14 16 23 N -0.45 -6.07 3.13 -513.81 -1.61 -7.68 16 24 C -0.04 -0.47 11.65 83.22 0.97 0.50 16 25 C -0.07 -1.20 11.87 83.54 0.99 -0.21 16 26 N -0.53 -13.26 11.24 -187.51 -2.11 -15.37 16 27 C 0.19 3.89 7.65 138.23 1.06 4.95 16 28 C -0.01 -0.26 5.37 30.09 0.16 -0.10 16 29 C 0.12 2.93 6.42 86.36 0.55 3.49 16 30 C -0.12 -3.23 4.71 30.67 0.14 -3.09 16 31 H 0.08 1.73 6.60 -2.39 -0.02 1.71 16 32 H 0.04 1.30 6.37 -2.39 -0.02 1.28 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.37 19.15 6.35 -92.71 -0.59 18.56 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.08 6.64 -2.39 -0.02 1.07 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 0.59 5.38 -2.39 -0.01 0.58 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 42 H 0.12 0.63 8.12 -2.39 -0.02 0.62 16 43 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 2.09 7.04 -2.39 -0.02 2.07 16 51 H 0.05 1.75 6.74 -2.39 -0.02 1.74 16 52 H 0.07 1.86 6.43 -2.39 -0.02 1.84 16 Total: -1.00 -78.72 397.15 2.76 -75.96 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.34 Total: 26.25 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 7.94 Total: 0.19 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -7.50 Total: -132.13 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -78.72 2.76 -75.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.312 kcal (2) G-P(sol) polarization free energy of solvation -78.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds