Wall clock time and date at job start Wed Apr 1 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47212 * 2 1 4 4 N 1.46494 * 109.47295 * 239.99938 * 2 1 3 5 5 C 1.36938 * 120.00371 * 84.99497 * 4 2 1 6 6 H 1.08001 * 119.99429 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00179 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00296 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00113 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47293 * 89.99917 * 9 7 5 11 11 H 1.48505 * 109.47141 * 209.99948 * 9 7 5 12 12 H 1.48501 * 109.46969 * 329.99494 * 9 7 5 13 13 C 1.53000 * 109.47133 * 119.99687 * 2 1 3 14 14 C 1.53042 * 109.46242 * 299.99744 * 13 2 1 15 15 C 1.53192 * 109.31309 * 181.36974 * 14 13 2 16 16 N 1.46927 * 108.77768 * 305.36767 * 15 14 13 17 17 C 1.34769 * 120.62741 * 233.58747 * 16 15 14 18 18 O 1.21278 * 120.00787 * 5.42010 * 17 16 15 19 19 C 1.50703 * 119.99539 * 185.42881 * 17 16 15 20 20 H 1.08997 * 109.51308 * 25.22378 * 19 17 16 21 21 C 1.53149 * 109.51067 * 145.32386 * 19 17 16 22 22 C 1.53263 * 109.50405 * 189.45424 * 21 19 17 23 23 N 1.46473 * 108.80229 * 309.65610 * 22 21 19 24 24 C 1.36309 * 127.77751 * 197.08168 * 23 22 21 25 25 C 1.34855 * 106.68709 * 179.97438 * 24 23 22 26 26 N 1.34288 * 108.07663 * 0.02562 * 25 24 23 27 27 C 1.30092 * 109.20846 * 0.02565 * 26 25 24 28 28 C 1.51047 * 127.38765 * 179.87545 * 27 26 25 29 29 C 1.46927 * 118.73508 * 53.86013 * 16 15 14 30 30 C 1.53034 * 109.44939 * 60.06371 * 13 2 1 31 31 H 1.09002 * 109.47159 * 60.00324 * 1 2 3 32 32 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46982 * 300.00184 * 1 2 3 34 34 H 0.97010 * 119.99963 * 265.00205 * 4 2 1 35 35 H 0.96990 * 120.00398 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46109 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.49056 * 61.42118 * 14 13 2 38 38 H 1.08997 * 109.50128 * 301.32991 * 14 13 2 39 39 H 1.09003 * 109.58570 * 185.57888 * 15 14 13 40 40 H 1.08993 * 109.70241 * 65.22974 * 15 14 13 41 41 H 1.09002 * 109.46440 * 309.46456 * 21 19 17 42 42 H 1.09001 * 109.46829 * 69.45207 * 21 19 17 43 43 H 1.09004 * 109.58044 * 69.45233 * 22 21 19 44 44 H 1.09001 * 109.58466 * 189.72600 * 22 21 19 45 45 H 1.07993 * 126.66010 * 359.93931 * 24 23 22 46 46 H 1.08007 * 125.96553 * 180.02562 * 25 24 23 47 47 H 1.08995 * 109.72082 * 76.39229 * 28 27 26 48 48 H 1.08997 * 109.71502 * 315.74292 * 28 27 26 49 49 H 1.09002 * 109.58783 * 65.92769 * 29 16 15 50 50 H 1.08996 * 109.58039 * 186.35116 * 29 16 15 51 51 H 1.09005 * 109.49677 * 298.56966 * 30 13 2 52 52 H 1.08994 * 109.50023 * 58.66521 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6113 -0.6621 -3.5092 8 7 2.7374 -0.0055 -4.6429 9 14 3.0543 -2.4748 -3.4256 10 1 1.8566 -3.2924 -3.7450 11 1 4.1296 -2.7674 -4.4072 12 1 3.5293 -2.8057 -2.0580 13 6 2.0400 -0.7212 1.2493 14 6 1.5298 0.0005 2.4987 15 6 2.0703 -0.7040 3.7470 16 7 1.7080 -2.1264 3.6815 17 6 1.0552 -2.7163 4.7023 18 8 0.6743 -2.0525 5.6431 19 6 0.7986 -4.2011 4.6748 20 1 1.5463 -4.6883 4.0491 21 6 0.8794 -4.7606 6.0982 22 6 0.8545 -6.2922 6.0481 23 7 -0.2731 -6.7191 5.2164 24 6 -0.8502 -7.9528 5.1615 25 6 -1.8488 -7.8733 4.2587 26 7 -1.8762 -6.6201 3.7769 27 6 -0.9358 -5.9228 4.3442 28 6 -0.5993 -4.4701 4.1039 29 6 2.0764 -2.8948 2.4846 30 6 1.5309 -2.1644 1.2481 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0601 -0.4629 -5.4350 36 1 3.1300 -0.7207 1.2493 37 1 0.4400 -0.0213 2.5118 38 1 1.8733 1.0349 2.4872 39 1 1.6314 -0.2558 4.6384 40 1 3.1551 -0.6045 3.7843 41 1 1.8052 -4.4274 6.5673 42 1 0.0289 -4.4024 6.6781 43 1 1.7860 -6.6588 5.6167 44 1 0.7379 -6.6889 7.0567 45 1 -0.5631 -8.8248 5.7301 46 1 -2.5111 -8.6772 3.9730 47 1 -1.3292 -3.8355 4.6063 48 1 -0.6060 -4.2632 3.0338 49 1 3.1618 -2.9702 2.4185 50 1 1.6415 -3.8925 2.5428 51 1 0.4411 -2.1658 1.2730 52 1 1.8752 -2.6709 0.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443456.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:35 Heat of formation + Delta-G solvation = 36.418041 kcal Electronic energy + Delta-G solvation = -31509.477106 eV Core-core repulsion = 27509.928193 eV Total energy + Delta-G solvation = -3999.548913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.64461 -40.63632 -38.45367 -36.58010 -35.62410 -33.78256 -32.92641 -31.35807 -30.81813 -30.22596 -29.16572 -28.53353 -25.78968 -24.92721 -24.02351 -23.31079 -22.91379 -21.75338 -21.22677 -19.77854 -19.31649 -18.58415 -17.86894 -17.44382 -17.26093 -16.37363 -15.99495 -15.49424 -14.91141 -14.80921 -14.69913 -14.46714 -14.44844 -14.11799 -14.06657 -13.99754 -13.51690 -13.37099 -13.26895 -12.95172 -12.65408 -12.49076 -12.43843 -12.31469 -12.11914 -11.76442 -11.64034 -11.57634 -11.47725 -11.33776 -10.94097 -10.72808 -10.46488 -10.37318 -10.21737 -10.12826 -9.99395 -9.89305 -9.75895 -9.56673 -8.95200 -8.78927 -8.62964 -7.27529 -5.77539 -3.12677 1.74147 2.27411 2.41041 2.69965 2.89703 3.33126 3.36814 3.43271 3.79073 4.00151 4.07133 4.10420 4.46637 4.57296 4.57697 4.61763 4.65312 4.73951 4.85192 4.87930 4.92478 5.03976 5.14128 5.18197 5.21905 5.24306 5.29402 5.35125 5.42860 5.49343 5.54103 5.57010 5.57795 5.65950 5.82008 5.82921 5.95493 5.98293 6.04153 6.11842 6.19623 6.30341 6.40068 6.48929 6.51321 6.58677 6.80553 6.83686 7.05988 7.16850 7.84723 7.89024 7.99772 8.41839 9.20650 9.93085 10.12833 11.41138 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002845 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.639109 B = 9840.590655 C =11239.574115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.055 0.945 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.128 4.128 15 C 0.111 3.889 16 N -0.603 5.603 17 C 0.525 3.475 18 O -0.541 6.541 19 C -0.115 4.115 20 H 0.101 0.899 21 C -0.116 4.116 22 C 0.104 3.896 23 N -0.457 5.457 24 C -0.056 4.056 25 C -0.030 4.030 26 N -0.485 5.485 27 C 0.212 3.788 28 C -0.021 4.021 29 C 0.101 3.899 30 C -0.131 4.131 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.175 0.825 46 H 0.170 0.830 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.074 0.926 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -13.313 25.460 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.073 0.927 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.011 4.011 16 N -0.336 5.336 17 C 0.312 3.688 18 O -0.418 6.418 19 C -0.137 4.137 20 H 0.119 0.881 21 C -0.154 4.154 22 C -0.018 4.018 23 N -0.141 5.141 24 C -0.189 4.189 25 C -0.178 4.178 26 N -0.203 5.203 27 C -0.051 4.051 28 C -0.061 4.061 29 C -0.021 4.021 30 C -0.169 4.169 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.192 0.808 46 H 0.188 0.812 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.634 -12.449 25.276 28.298 hybrid contribution 0.976 -1.887 0.308 2.147 sum -1.658 -14.336 25.584 29.374 Atomic orbital electron populations 1.22505 0.99003 1.00898 1.00358 1.20159 0.91980 0.95456 0.84992 0.92727 1.42846 1.79745 1.09448 1.07189 1.19082 1.36683 0.95607 0.85637 0.89262 1.24666 1.01606 0.97390 0.95593 1.69695 1.52867 1.35512 1.00254 0.86589 0.78169 0.87059 0.76907 1.21064 1.21798 1.20438 1.21436 1.00442 0.94337 0.95070 1.21999 1.01739 0.99454 0.93429 1.21680 0.99797 0.79787 0.99814 1.48158 1.56685 1.11211 1.17542 1.20193 0.77424 0.89054 0.82124 1.90698 1.51011 1.65349 1.34734 1.21474 0.99288 0.94078 0.98816 0.88142 1.21742 1.05467 0.92251 0.95955 1.22014 0.88102 0.96069 0.95612 1.45425 1.26553 1.09862 1.32272 1.22566 1.00399 0.89190 1.06736 1.22401 1.00757 0.95184 0.99451 1.70084 1.20076 1.04241 1.25943 1.23089 0.93400 0.95246 0.93324 1.20056 0.94906 0.87560 1.03532 1.22037 1.00524 0.95042 0.84542 1.22088 1.01753 0.96421 0.96649 0.92611 0.93423 0.94042 0.80680 0.93096 0.90942 0.90928 0.90483 0.89125 0.91455 0.88748 0.89337 0.89486 0.88670 0.80818 0.81243 0.88384 0.87926 0.90981 0.89872 0.90727 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.79 37.16 0.33 -2.48 16 2 C 0.18 3.25 2.72 -67.94 -0.18 3.06 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.75 -16.72 4.85 -53.43 -0.26 -16.98 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -29.13 13.97 55.49 0.78 -28.35 16 9 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 13 C -0.09 -1.27 2.14 -90.58 -0.19 -1.47 16 14 C -0.13 -1.45 4.97 -26.61 -0.13 -1.59 16 15 C 0.11 1.16 6.44 -3.71 -0.02 1.14 16 16 N -0.60 -6.18 2.97 -172.51 -0.51 -6.69 16 17 C 0.52 5.56 6.66 -10.99 -0.07 5.49 16 18 O -0.54 -7.41 15.86 5.56 0.09 -7.32 16 19 C -0.11 -0.92 1.74 -91.50 -0.16 -1.08 16 20 H 0.10 0.69 6.16 -51.93 -0.32 0.37 16 21 C -0.12 -0.76 4.77 -26.52 -0.13 -0.89 16 22 C 0.10 0.56 6.98 -3.92 -0.03 0.53 16 23 N -0.46 -3.94 3.13 -113.75 -0.36 -4.29 16 24 C -0.06 -0.46 11.64 -16.76 -0.20 -0.66 16 25 C -0.03 -0.31 11.87 -17.68 -0.21 -0.52 16 26 N -0.48 -6.33 11.24 -10.62 -0.12 -6.45 16 27 C 0.21 2.32 7.65 -155.23 -1.19 1.13 16 28 C -0.02 -0.20 5.58 -27.52 -0.15 -0.36 16 29 C 0.10 0.97 6.18 -3.49 -0.02 0.95 16 30 C -0.13 -1.63 4.83 -26.39 -0.13 -1.76 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.78 6.46 -51.93 -0.34 0.44 16 33 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 34 H 0.36 7.81 3.90 -40.82 -0.16 7.65 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.87 6.51 -51.93 -0.34 0.54 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 47 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 48 H 0.10 0.98 7.92 -51.93 -0.41 0.56 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.67 5.35 -51.93 -0.28 0.39 16 51 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 52 H 0.08 1.10 6.46 -51.93 -0.34 0.76 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -35.00 393.96 -10.20 -45.20 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.29 Total: 7.27 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.74 Total: -5.23 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.47 Total: -62.76 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.00 -10.20 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443456.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.618 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds