Wall clock time and date at job start Wed Apr 1 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47212 * 2 1 4 4 N 1.46494 * 109.47295 * 239.99938 * 2 1 3 5 5 C 1.36938 * 120.00371 * 84.99497 * 4 2 1 6 6 H 1.08001 * 119.99429 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00179 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00296 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00113 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47293 * 89.99917 * 9 7 5 11 11 H 1.48505 * 109.47141 * 209.99948 * 9 7 5 12 12 H 1.48501 * 109.46969 * 329.99494 * 9 7 5 13 13 C 1.53000 * 109.47133 * 119.99687 * 2 1 3 14 14 C 1.53042 * 109.46242 * 299.99744 * 13 2 1 15 15 C 1.53192 * 109.31309 * 181.36974 * 14 13 2 16 16 N 1.46927 * 108.77768 * 305.36767 * 15 14 13 17 17 C 1.34769 * 120.62741 * 233.58747 * 16 15 14 18 18 O 1.21278 * 120.00787 * 5.42010 * 17 16 15 19 19 C 1.50703 * 119.99539 * 185.42881 * 17 16 15 20 20 H 1.08997 * 109.51308 * 25.22378 * 19 17 16 21 21 C 1.53149 * 109.51067 * 145.32386 * 19 17 16 22 22 C 1.53263 * 109.50405 * 189.45424 * 21 19 17 23 23 N 1.46473 * 108.80229 * 309.65610 * 22 21 19 24 24 C 1.36309 * 127.77751 * 197.08168 * 23 22 21 25 25 C 1.34855 * 106.68709 * 179.97438 * 24 23 22 26 26 N 1.34288 * 108.07663 * 0.02562 * 25 24 23 27 27 C 1.30092 * 109.20846 * 0.02565 * 26 25 24 28 28 C 1.51047 * 127.38765 * 179.87545 * 27 26 25 29 29 C 1.46927 * 118.73508 * 53.86013 * 16 15 14 30 30 C 1.53034 * 109.44939 * 60.06371 * 13 2 1 31 31 H 1.09002 * 109.47159 * 60.00324 * 1 2 3 32 32 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46982 * 300.00184 * 1 2 3 34 34 H 0.97010 * 119.99963 * 265.00205 * 4 2 1 35 35 H 0.96990 * 120.00398 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46109 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.49056 * 61.42118 * 14 13 2 38 38 H 1.08997 * 109.50128 * 301.32991 * 14 13 2 39 39 H 1.09003 * 109.58570 * 185.57888 * 15 14 13 40 40 H 1.08993 * 109.70241 * 65.22974 * 15 14 13 41 41 H 1.09002 * 109.46440 * 309.46456 * 21 19 17 42 42 H 1.09001 * 109.46829 * 69.45207 * 21 19 17 43 43 H 1.09004 * 109.58044 * 69.45233 * 22 21 19 44 44 H 1.09001 * 109.58466 * 189.72600 * 22 21 19 45 45 H 1.07993 * 126.66010 * 359.93931 * 24 23 22 46 46 H 1.08007 * 125.96553 * 180.02562 * 25 24 23 47 47 H 1.08995 * 109.72082 * 76.39229 * 28 27 26 48 48 H 1.08997 * 109.71502 * 315.74292 * 28 27 26 49 49 H 1.09002 * 109.58783 * 65.92769 * 29 16 15 50 50 H 1.08996 * 109.58039 * 186.35116 * 29 16 15 51 51 H 1.09005 * 109.49677 * 298.56966 * 30 13 2 52 52 H 1.08994 * 109.50023 * 58.66521 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6113 -0.6621 -3.5092 8 7 2.7374 -0.0055 -4.6429 9 14 3.0543 -2.4748 -3.4256 10 1 1.8566 -3.2924 -3.7450 11 1 4.1296 -2.7674 -4.4072 12 1 3.5293 -2.8057 -2.0580 13 6 2.0400 -0.7212 1.2493 14 6 1.5298 0.0005 2.4987 15 6 2.0703 -0.7040 3.7470 16 7 1.7080 -2.1264 3.6815 17 6 1.0552 -2.7163 4.7023 18 8 0.6743 -2.0525 5.6431 19 6 0.7986 -4.2011 4.6748 20 1 1.5463 -4.6883 4.0491 21 6 0.8794 -4.7606 6.0982 22 6 0.8545 -6.2922 6.0481 23 7 -0.2731 -6.7191 5.2164 24 6 -0.8502 -7.9528 5.1615 25 6 -1.8488 -7.8733 4.2587 26 7 -1.8762 -6.6201 3.7769 27 6 -0.9358 -5.9228 4.3442 28 6 -0.5993 -4.4701 4.1039 29 6 2.0764 -2.8948 2.4846 30 6 1.5309 -2.1644 1.2481 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0601 -0.4629 -5.4350 36 1 3.1300 -0.7207 1.2493 37 1 0.4400 -0.0213 2.5118 38 1 1.8733 1.0349 2.4872 39 1 1.6314 -0.2558 4.6384 40 1 3.1551 -0.6045 3.7843 41 1 1.8052 -4.4274 6.5673 42 1 0.0289 -4.4024 6.6781 43 1 1.7860 -6.6588 5.6167 44 1 0.7379 -6.6889 7.0567 45 1 -0.5631 -8.8248 5.7301 46 1 -2.5111 -8.6772 3.9730 47 1 -1.3292 -3.8355 4.6063 48 1 -0.6060 -4.2632 3.0338 49 1 3.1618 -2.9702 2.4185 50 1 1.6415 -3.8925 2.5428 51 1 0.4411 -2.1658 1.2730 52 1 1.8752 -2.6709 0.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664443456.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:32 Heat of formation + Delta-G solvation = 14.722003 kcal Electronic energy + Delta-G solvation = -31510.417917 eV Core-core repulsion = 27509.928193 eV Total energy + Delta-G solvation = -4000.489724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.30315 -41.48570 -39.53594 -37.30970 -36.89963 -34.76455 -34.30609 -32.77003 -31.98348 -30.85869 -30.36839 -29.52283 -26.84984 -25.91668 -25.15463 -24.41879 -23.86167 -22.53248 -22.27411 -20.81757 -20.17432 -19.73267 -19.41633 -18.26368 -17.99248 -17.11683 -16.73179 -16.59346 -16.35536 -16.06471 -15.68218 -15.40316 -15.25971 -15.10722 -14.90262 -14.76530 -14.63545 -14.41708 -14.26746 -14.22799 -14.03264 -13.64944 -13.20437 -13.10221 -12.97659 -12.90466 -12.89613 -12.79714 -12.71180 -12.26226 -12.18729 -12.08346 -11.82859 -11.79785 -11.63905 -11.32091 -11.15416 -10.96103 -10.92813 -10.72747 -10.53954 -9.67369 -9.30030 -9.27169 -7.99262 -5.31611 1.09669 1.37087 1.42861 1.46803 1.49580 1.85431 1.93585 2.15771 2.51005 3.11959 3.32338 3.44386 3.46958 3.54533 3.57408 3.74146 3.87259 3.90206 4.04612 4.10824 4.14158 4.17672 4.24509 4.33469 4.39213 4.46278 4.54587 4.55088 4.57331 4.63322 4.65364 4.71137 4.76086 4.80119 4.86059 4.89500 4.93994 4.97765 5.05172 5.09462 5.11262 5.22814 5.32497 5.34332 5.40872 5.55952 5.69677 5.81761 5.85200 6.22265 6.25443 6.36185 7.08274 7.12679 7.15343 7.89774 8.09149 9.22868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002845 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.639109 B = 9840.590655 C =11239.574115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.039 0.961 4 N -0.749 5.749 5 C -0.224 4.224 6 H 0.052 0.948 7 C -0.070 4.070 8 N -0.989 5.989 9 Si 0.952 3.048 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.242 1.242 13 C -0.083 4.083 14 C -0.120 4.120 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.526 3.474 18 O -0.574 6.574 19 C -0.105 4.105 20 H 0.120 0.880 21 C -0.113 4.113 22 C 0.103 3.897 23 N -0.455 5.455 24 C -0.038 4.038 25 C -0.065 4.065 26 N -0.532 5.532 27 C 0.192 3.808 28 C -0.017 4.017 29 C 0.107 3.893 30 C -0.131 4.131 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.213 0.787 46 H 0.181 0.819 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.070 0.930 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -16.278 28.494 32.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.057 0.943 4 N -0.393 5.393 5 C -0.355 4.355 6 H 0.070 0.930 7 C -0.260 4.260 8 N -0.640 5.640 9 Si 0.779 3.221 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.166 1.166 13 C -0.102 4.102 14 C -0.159 4.159 15 C -0.008 4.008 16 N -0.334 5.334 17 C 0.314 3.686 18 O -0.454 6.454 19 C -0.127 4.127 20 H 0.138 0.862 21 C -0.151 4.151 22 C -0.017 4.017 23 N -0.138 5.138 24 C -0.172 4.172 25 C -0.212 4.212 26 N -0.251 5.251 27 C -0.071 4.071 28 C -0.056 4.056 29 C -0.015 4.015 30 C -0.170 4.170 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.229 0.771 46 H 0.198 0.802 47 H 0.101 0.899 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.121 0.879 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.191 -15.413 28.380 32.317 hybrid contribution 0.444 -0.841 -0.587 1.118 sum -0.746 -16.254 27.792 32.205 Atomic orbital electron populations 1.22375 0.98080 1.01211 1.00168 1.20390 0.92502 0.94958 0.85326 0.94334 1.42831 1.79869 1.09722 1.06911 1.19030 1.34622 0.94313 0.87557 0.93007 1.25519 1.02670 1.02698 0.95146 1.69894 1.55103 1.37790 1.01219 0.85451 0.77572 0.80596 0.78459 1.20809 1.22587 1.16639 1.21287 1.00363 0.95002 0.93531 1.21916 1.01289 0.99811 0.92837 1.21632 1.00585 0.79910 0.98653 1.48216 1.56381 1.11169 1.17667 1.20586 0.76526 0.89938 0.81509 1.90689 1.52275 1.66337 1.36083 1.21444 0.98670 0.92296 1.00248 0.86186 1.21723 1.05438 0.93275 0.94633 1.22288 0.87823 0.94983 0.96629 1.45655 1.26821 1.09629 1.31716 1.23128 0.98810 0.89869 1.05374 1.22797 1.02515 0.94924 1.00956 1.69993 1.21625 1.05805 1.27709 1.23151 0.93912 0.95707 0.94295 1.19966 0.95505 0.86974 1.03156 1.22053 1.01476 0.95295 0.82644 1.22057 1.01575 0.95587 0.97741 0.95712 0.92830 0.91305 0.79922 0.93535 0.90854 0.91538 0.89819 0.89749 0.89927 0.87289 0.91128 0.87117 0.86243 0.77075 0.80157 0.89907 0.88370 0.89366 0.87875 0.91168 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 8.79 71.98 0.63 -4.63 16 2 C 0.18 6.15 2.72 44.99 0.12 6.28 16 3 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 4 N -0.75 -33.10 4.85 -322.96 -1.56 -34.66 16 5 C -0.22 -12.57 10.41 84.03 0.87 -11.70 16 6 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 8 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 9 Si 0.95 44.47 27.74 68.60 1.90 46.37 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.24 -9.76 6.52 99.48 0.65 -9.11 16 13 C -0.08 -2.08 2.14 -10.77 -0.02 -2.11 16 14 C -0.12 -2.49 4.97 30.67 0.15 -2.34 16 15 C 0.11 2.10 6.44 86.36 0.56 2.66 16 16 N -0.60 -10.63 2.97 -818.08 -2.43 -13.05 16 17 C 0.53 9.96 6.66 87.66 0.58 10.55 16 18 O -0.57 -14.94 15.86 -3.02 -0.05 -14.99 16 19 C -0.10 -1.41 1.74 -11.37 -0.02 -1.43 16 20 H 0.12 1.15 6.16 -2.39 -0.01 1.13 16 21 C -0.11 -1.14 4.77 30.73 0.15 -1.00 16 22 C 0.10 0.68 6.98 86.47 0.60 1.28 16 23 N -0.46 -6.52 3.13 -513.81 -1.61 -8.13 16 24 C -0.04 -0.51 11.64 83.22 0.97 0.46 16 25 C -0.06 -1.27 11.87 83.54 0.99 -0.28 16 26 N -0.53 -13.70 11.24 -187.50 -2.11 -15.80 16 27 C 0.19 3.96 7.65 138.23 1.06 5.02 16 28 C -0.02 -0.30 5.58 30.08 0.17 -0.13 16 29 C 0.11 1.68 6.18 86.51 0.53 2.21 16 30 C -0.13 -2.93 4.83 30.81 0.15 -2.78 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.70 6.46 -2.39 -0.02 1.69 16 33 H 0.07 1.89 6.46 -2.38 -0.02 1.87 16 34 H 0.37 15.21 3.90 -92.70 -0.36 14.85 16 35 H 0.26 15.73 8.31 -92.72 -0.77 14.96 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.48 6.51 -2.39 -0.02 1.46 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.72 7.00 -2.39 -0.02 1.71 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 0.82 8.11 -2.39 -0.02 0.80 16 42 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 48 H 0.10 1.78 7.92 -2.39 -0.02 1.76 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.10 1.24 5.35 -2.39 -0.01 1.23 16 51 H 0.07 1.63 6.51 -2.38 -0.02 1.62 16 52 H 0.07 1.68 6.46 -2.39 -0.02 1.66 16 Total: -1.00 -79.90 393.96 2.92 -76.98 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.51 Total: 28.20 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 7.97 Total: -1.54 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -7.41 Total: -135.02 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.05 Total: -14.99 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Total: -79.90 2.92 -76.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443456.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.705 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds