Wall clock time and date at job start Wed Apr 1 2020 03:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47242 * 2 1 4 4 N 1.46495 * 109.47290 * 239.99614 * 2 1 3 5 5 C 1.36939 * 119.99825 * 85.00082 * 4 2 1 6 6 H 1.07996 * 120.00318 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99930 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47162 * 60.00766 * 9 7 5 11 11 H 1.48504 * 109.46739 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46987 * 300.00084 * 9 7 5 13 13 C 1.52996 * 109.46920 * 119.99718 * 2 1 3 14 14 C 1.53047 * 109.45949 * 299.99950 * 13 2 1 15 15 C 1.53192 * 109.31239 * 181.38681 * 14 13 2 16 16 N 1.46932 * 108.77625 * 305.36772 * 15 14 13 17 17 C 1.34772 * 120.63119 * 233.58888 * 16 15 14 18 18 O 1.21607 * 120.00019 * 5.47931 * 17 16 15 19 19 C 1.47427 * 120.00219 * 185.47814 * 17 16 15 20 20 C 1.41474 * 126.48714 * 39.94681 * 19 17 16 21 21 N 1.30602 * 108.06968 * 180.02562 * 20 19 17 22 22 N 1.39452 * 108.92813 * 0.08035 * 21 20 19 23 23 C 1.34767 * 108.33790 * 359.87517 * 22 21 20 24 24 C 1.50805 * 124.62884 * 180.02562 * 23 22 21 25 25 C 1.53456 * 108.19297 * 344.41780 * 24 23 22 26 26 C 1.53163 * 109.11527 * 48.36146 * 25 24 23 27 27 C 1.46689 * 127.36205 * 180.21806 * 22 21 20 28 28 C 1.46925 * 118.73873 * 53.85847 * 16 15 14 29 29 C 1.53040 * 109.46207 * 60.06758 * 13 2 1 30 30 H 1.08997 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47227 * 300.00274 * 1 2 3 32 32 H 1.09007 * 109.46736 * 60.00384 * 1 2 3 33 33 H 0.96998 * 120.00171 * 264.99985 * 4 2 1 34 34 H 0.96995 * 119.99729 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.45186 * 180.02562 * 13 2 1 36 36 H 1.08995 * 109.49307 * 61.43727 * 14 13 2 37 37 H 1.08992 * 109.50097 * 301.33746 * 14 13 2 38 38 H 1.09000 * 109.59131 * 185.58061 * 15 14 13 39 39 H 1.09001 * 109.70668 * 65.21824 * 15 14 13 40 40 H 1.07997 * 125.95978 * 0.02822 * 20 19 17 41 41 H 1.08997 * 109.72251 * 224.74786 * 24 23 22 42 42 H 1.08998 * 109.75531 * 104.11306 * 24 23 22 43 43 H 1.09001 * 109.53019 * 288.46758 * 25 24 23 44 44 H 1.08998 * 109.52802 * 168.24967 * 25 24 23 45 45 H 1.09003 * 109.45865 * 170.73904 * 26 25 24 46 46 H 1.09004 * 109.45634 * 50.78881 * 26 25 24 47 47 H 1.08998 * 109.57255 * 42.53470 * 27 22 21 48 48 H 1.09002 * 109.57528 * 282.28128 * 27 22 21 49 49 H 1.08996 * 109.58746 * 65.93011 * 28 16 15 50 50 H 1.08999 * 109.58632 * 186.35725 * 28 16 15 51 51 H 1.08993 * 109.49516 * 298.56823 * 29 13 2 52 52 H 1.08996 * 109.49504 * 58.63132 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6124 -0.6619 -3.5090 8 7 2.9254 -1.9389 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 3.7467 1.3925 -4.9361 11 1 3.3004 -0.6484 -6.1680 12 1 1.4693 0.8070 -5.5288 13 6 2.0399 -0.7212 1.2493 14 6 1.5296 0.0006 2.4987 15 6 2.0704 -0.7037 3.7470 16 7 1.7085 -2.1262 3.6817 17 6 1.0558 -2.7163 4.7025 18 8 0.6728 -2.0504 5.6453 19 6 0.8060 -4.1690 4.6764 20 6 1.7018 -5.1687 4.2297 21 7 1.1150 -6.3277 4.3638 22 7 -0.1609 -6.1305 4.8909 23 6 -0.3416 -4.8085 5.0806 24 6 -1.5972 -4.1865 5.6380 25 6 -2.7197 -5.2306 5.5708 26 6 -2.2093 -6.5537 6.1494 27 6 -1.1617 -7.1553 5.2069 28 6 2.0769 -2.8946 2.4848 29 6 1.5310 -2.1645 1.2483 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 3.2488 -2.3962 -4.2417 35 1 3.1300 -0.7206 1.2492 36 1 0.4400 -0.0214 2.5118 37 1 1.8730 1.0349 2.4871 38 1 1.6315 -0.2556 4.6384 39 1 3.1552 -0.6041 3.7842 40 1 2.6971 -5.0024 3.8450 41 1 -1.8704 -3.3142 5.0442 42 1 -1.4327 -3.8894 6.6737 43 1 -3.0187 -5.3780 4.5330 44 1 -3.5745 -4.8845 6.1518 45 1 -3.0424 -7.2484 6.2571 46 1 -1.7587 -6.3733 7.1255 47 1 -0.6767 -8.0018 5.6928 48 1 -1.6451 -7.4891 4.2887 49 1 3.1622 -2.9699 2.4187 50 1 1.6421 -3.8925 2.5431 51 1 0.4414 -2.1660 1.2732 52 1 1.8750 -2.6708 0.3464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664462105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:28 Heat of formation + Delta-G solvation = 42.177918 kcal Electronic energy + Delta-G solvation = -31432.885682 eV Core-core repulsion = 27433.586536 eV Total energy + Delta-G solvation = -3999.299146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.92565 -39.81375 -37.80985 -36.90458 -35.28593 -33.06174 -32.70136 -31.18892 -30.67993 -30.44905 -28.83819 -27.99565 -25.37308 -24.70047 -24.00001 -23.21509 -22.75588 -22.16043 -21.09559 -19.87411 -19.02213 -18.38585 -17.41526 -17.12001 -16.30463 -15.84696 -15.62376 -15.17503 -14.93449 -14.79727 -14.67173 -14.39176 -14.32238 -14.07569 -13.85450 -13.70921 -13.57458 -13.04442 -12.96702 -12.76994 -12.48805 -12.30354 -12.09630 -11.83165 -11.69995 -11.54343 -11.48084 -11.44246 -11.29708 -11.00233 -10.93990 -10.81220 -10.53552 -10.29182 -10.22174 -10.07362 -9.80183 -9.67594 -9.50647 -9.43409 -8.87526 -8.76215 -8.42444 -6.91856 -5.74068 -3.01572 1.44487 2.08369 2.11512 3.01345 3.32823 3.45253 3.49878 3.50548 3.95079 4.13493 4.25046 4.25324 4.57222 4.61111 4.75426 4.83864 4.91599 5.00198 5.02771 5.13486 5.16181 5.23532 5.26157 5.29210 5.33981 5.42150 5.48278 5.52447 5.59062 5.60928 5.69226 5.71132 5.76220 5.87634 5.91900 6.03811 6.07023 6.21567 6.23449 6.29106 6.36440 6.37353 6.56256 6.63247 6.67072 6.75311 6.81924 6.97669 7.20563 7.41886 7.53812 7.72794 8.30092 8.45712 9.56508 10.15721 10.50181 11.48864 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.002497 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.728009 B =11210.518905 C =11876.079242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.114 3.886 16 N -0.601 5.601 17 C 0.598 3.402 18 O -0.553 6.553 19 C -0.285 4.285 20 C 0.081 3.919 21 N -0.294 5.294 22 N -0.361 5.361 23 C 0.147 3.853 24 C -0.060 4.060 25 C -0.129 4.129 26 C -0.138 4.138 27 C 0.130 3.870 28 C 0.102 3.898 29 C -0.126 4.126 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.191 0.809 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.066 0.934 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 -8.608 21.755 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.008 4.008 16 N -0.334 5.334 17 C 0.386 3.614 18 O -0.432 6.432 19 C -0.299 4.299 20 C -0.107 4.107 21 N -0.113 5.113 22 N -0.142 5.142 23 C 0.016 3.984 24 C -0.099 4.099 25 C -0.167 4.167 26 C -0.176 4.176 27 C 0.010 3.990 28 C -0.021 4.021 29 C -0.164 4.164 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.208 0.792 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.085 0.915 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.292 -9.557 21.949 25.680 hybrid contribution 0.264 0.894 -1.137 1.470 sum -9.029 -8.663 20.813 24.284 Atomic orbital electron populations 1.22527 0.99665 1.00765 0.99668 1.20190 0.91691 0.95159 0.86153 0.93681 1.42486 1.78140 1.10720 1.05313 1.19207 1.36163 0.93811 0.87473 0.91375 1.24708 1.02400 0.95979 0.97966 1.69637 1.51179 1.08633 1.28914 0.86299 0.77725 0.78614 0.83746 1.21346 1.21770 1.21402 1.21391 1.00321 0.94594 0.94603 1.22000 1.01490 0.99226 0.93868 1.21623 0.99638 0.79996 0.99549 1.47942 1.57164 1.10779 1.17467 1.17255 0.76938 0.85500 0.81690 1.90726 1.52336 1.65264 1.34852 1.19770 0.97003 0.94454 1.18688 1.24157 1.00057 0.88766 0.97670 1.77062 0.91233 1.23058 1.19944 1.48526 1.12150 1.04990 1.48490 1.21319 0.96639 0.84353 0.96128 1.20526 0.88553 0.98107 1.02667 1.21744 0.98267 0.94253 1.02413 1.21989 0.98357 0.98220 0.99058 1.21901 0.87212 0.89497 1.00431 1.22134 1.00088 0.95588 0.84305 1.22032 1.01132 0.96190 0.97068 0.93418 0.94409 0.93239 0.78189 0.93551 0.91071 0.91258 0.90880 0.89312 0.91638 0.79189 0.88550 0.88361 0.90922 0.89831 0.88741 0.90429 0.88662 0.89415 0.91248 0.89507 0.91520 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 8.79 37.16 0.33 -2.67 16 2 C 0.18 3.42 2.72 -67.94 -0.18 3.24 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.62 5.04 -53.43 -0.27 -17.89 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 9 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C -0.09 -1.40 2.14 -90.58 -0.19 -1.59 16 14 C -0.13 -1.68 4.96 -26.61 -0.13 -1.81 16 15 C 0.11 1.44 6.44 -3.71 -0.02 1.42 16 16 N -0.60 -7.95 2.97 -173.77 -0.52 -8.46 16 17 C 0.60 8.59 7.47 -12.52 -0.09 8.49 16 18 O -0.55 -9.23 16.14 5.27 0.09 -9.15 16 19 C -0.28 -3.70 5.20 -105.21 -0.55 -4.25 16 20 C 0.08 0.98 9.63 -16.84 -0.16 0.81 16 21 N -0.29 -3.74 12.54 30.93 0.39 -3.35 16 22 N -0.36 -3.91 4.01 -56.36 -0.23 -4.14 16 23 C 0.15 1.69 6.65 -81.54 -0.54 1.15 16 24 C -0.06 -0.53 5.79 -27.60 -0.16 -0.69 16 25 C -0.13 -0.74 5.98 -26.41 -0.16 -0.90 16 26 C -0.14 -0.65 5.93 -26.53 -0.16 -0.81 16 27 C 0.13 0.88 7.26 -3.83 -0.03 0.85 16 28 C 0.10 1.28 5.51 -3.49 -0.02 1.26 16 29 C -0.13 -1.90 4.83 -26.39 -0.13 -2.02 16 30 H 0.05 0.87 6.46 -51.93 -0.34 0.53 16 31 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.38 9.76 6.04 -40.82 -0.25 9.52 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.19 1.87 7.32 -52.49 -0.38 1.48 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.06 4.74 -51.93 -0.25 0.81 16 51 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 52 H 0.08 1.45 6.46 -51.93 -0.34 1.11 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -33.72 396.88 -9.69 -43.41 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.38 Total: 8.08 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.45 Total: -4.64 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.10 Total: -61.02 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.72 -9.69 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664462105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.585 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds