Wall clock time and date at job start Wed Apr 1 2020 03:59:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.47242 * 2 1
4 4 N 1.46495 * 109.47290 * 239.99614 * 2 1 3
5 5 C 1.36939 * 119.99825 * 85.00082 * 4 2 1
6 6 H 1.07996 * 120.00318 * 0.02562 * 5 4 2
7 7 C 1.38818 * 119.99930 * 179.97438 * 5 4 2
8 8 N 1.31617 * 119.99890 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 119.99805 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47162 * 60.00766 * 9 7 5
11 11 H 1.48504 * 109.46739 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.46987 * 300.00084 * 9 7 5
13 13 C 1.52996 * 109.46920 * 119.99718 * 2 1 3
14 14 C 1.53047 * 109.45949 * 299.99950 * 13 2 1
15 15 C 1.53192 * 109.31239 * 181.38681 * 14 13 2
16 16 N 1.46932 * 108.77625 * 305.36772 * 15 14 13
17 17 C 1.34772 * 120.63119 * 233.58888 * 16 15 14
18 18 O 1.21607 * 120.00019 * 5.47931 * 17 16 15
19 19 C 1.47427 * 120.00219 * 185.47814 * 17 16 15
20 20 C 1.41474 * 126.48714 * 39.94681 * 19 17 16
21 21 N 1.30602 * 108.06968 * 180.02562 * 20 19 17
22 22 N 1.39452 * 108.92813 * 0.08035 * 21 20 19
23 23 C 1.34767 * 108.33790 * 359.87517 * 22 21 20
24 24 C 1.50805 * 124.62884 * 180.02562 * 23 22 21
25 25 C 1.53456 * 108.19297 * 344.41780 * 24 23 22
26 26 C 1.53163 * 109.11527 * 48.36146 * 25 24 23
27 27 C 1.46689 * 127.36205 * 180.21806 * 22 21 20
28 28 C 1.46925 * 118.73873 * 53.85847 * 16 15 14
29 29 C 1.53040 * 109.46207 * 60.06758 * 13 2 1
30 30 H 1.08997 * 109.46963 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47227 * 300.00274 * 1 2 3
32 32 H 1.09007 * 109.46736 * 60.00384 * 1 2 3
33 33 H 0.96998 * 120.00171 * 264.99985 * 4 2 1
34 34 H 0.96995 * 119.99729 * 179.97438 * 8 7 5
35 35 H 1.09002 * 109.45186 * 180.02562 * 13 2 1
36 36 H 1.08995 * 109.49307 * 61.43727 * 14 13 2
37 37 H 1.08992 * 109.50097 * 301.33746 * 14 13 2
38 38 H 1.09000 * 109.59131 * 185.58061 * 15 14 13
39 39 H 1.09001 * 109.70668 * 65.21824 * 15 14 13
40 40 H 1.07997 * 125.95978 * 0.02822 * 20 19 17
41 41 H 1.08997 * 109.72251 * 224.74786 * 24 23 22
42 42 H 1.08998 * 109.75531 * 104.11306 * 24 23 22
43 43 H 1.09001 * 109.53019 * 288.46758 * 25 24 23
44 44 H 1.08998 * 109.52802 * 168.24967 * 25 24 23
45 45 H 1.09003 * 109.45865 * 170.73904 * 26 25 24
46 46 H 1.09004 * 109.45634 * 50.78881 * 26 25 24
47 47 H 1.08998 * 109.57255 * 42.53470 * 27 22 21
48 48 H 1.09002 * 109.57528 * 282.28128 * 27 22 21
49 49 H 1.08996 * 109.58746 * 65.93011 * 28 16 15
50 50 H 1.08999 * 109.58632 * 186.35725 * 28 16 15
51 51 H 1.08993 * 109.49516 * 298.56823 * 29 13 2
52 52 H 1.08996 * 109.49504 * 58.63132 * 29 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1492 -0.0076 -2.3757
6 1 1.8927 1.0404 -2.4242
7 6 2.6124 -0.6619 -3.5090
8 7 2.9254 -1.9389 -3.4498
9 14 2.7915 0.2702 -5.1179
10 1 3.7467 1.3925 -4.9361
11 1 3.3004 -0.6484 -6.1680
12 1 1.4693 0.8070 -5.5288
13 6 2.0399 -0.7212 1.2493
14 6 1.5296 0.0006 2.4987
15 6 2.0704 -0.7037 3.7470
16 7 1.7085 -2.1262 3.6817
17 6 1.0558 -2.7163 4.7025
18 8 0.6728 -2.0504 5.6453
19 6 0.8060 -4.1690 4.6764
20 6 1.7018 -5.1687 4.2297
21 7 1.1150 -6.3277 4.3638
22 7 -0.1609 -6.1305 4.8909
23 6 -0.3416 -4.8085 5.0806
24 6 -1.5972 -4.1865 5.6380
25 6 -2.7197 -5.2306 5.5708
26 6 -2.2093 -6.5537 6.1494
27 6 -1.1617 -7.1553 5.2069
28 6 2.0769 -2.8946 2.4848
29 6 1.5310 -2.1645 1.2483
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8901
33 1 2.2491 -1.6318 -1.1525
34 1 3.2488 -2.3962 -4.2417
35 1 3.1300 -0.7206 1.2492
36 1 0.4400 -0.0214 2.5118
37 1 1.8730 1.0349 2.4871
38 1 1.6315 -0.2556 4.6384
39 1 3.1552 -0.6041 3.7842
40 1 2.6971 -5.0024 3.8450
41 1 -1.8704 -3.3142 5.0442
42 1 -1.4327 -3.8894 6.6737
43 1 -3.0187 -5.3780 4.5330
44 1 -3.5745 -4.8845 6.1518
45 1 -3.0424 -7.2484 6.2571
46 1 -1.7587 -6.3733 7.1255
47 1 -0.6767 -8.0018 5.6928
48 1 -1.6451 -7.4891 4.2887
49 1 3.1622 -2.9699 2.4187
50 1 1.6421 -3.8925 2.5431
51 1 0.4414 -2.1660 1.2732
52 1 1.8750 -2.6708 0.3464
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001664462105.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:27
Heat of formation + Delta-G solvation = 21.737523 kcal
Electronic energy + Delta-G solvation = -31433.772044 eV
Core-core repulsion = 27433.586536 eV
Total energy + Delta-G solvation = -4000.185508 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-42.77907 -40.92723 -39.11140 -37.53020 -36.75853 -34.64189 -33.65079 -32.46549
-31.87341 -31.43697 -30.09015 -29.27697 -26.72095 -25.69280 -25.29831 -24.37001
-23.85794 -23.02933 -22.25769 -20.87621 -20.02877 -19.44872 -19.22019 -18.32372
-17.23721 -16.73907 -16.73030 -16.44828 -16.18655 -15.86313 -15.58214 -15.42866
-15.34237 -15.19847 -14.98085 -14.90218 -14.71500 -14.24603 -14.15037 -14.11621
-13.62006 -13.47982 -13.10738 -12.97381 -12.85959 -12.80536 -12.73457 -12.60597
-12.37104 -12.17458 -12.00726 -11.98189 -11.95572 -11.73378 -11.66437 -11.57263
-11.22894 -11.08535 -10.88262 -10.81735 -10.31849 -9.75410 -9.46927 -8.94369
-7.90040 -5.16415 0.55890 1.15108 1.36824 1.48230 1.50343 1.56264
1.96884 2.29313 2.59082 3.33659 3.43165 3.45557 3.69985 3.73144
3.77224 3.82226 3.87713 3.97191 4.03999 4.18054 4.27244 4.30075
4.32769 4.37320 4.39325 4.43320 4.57886 4.61121 4.64313 4.69614
4.76784 4.78475 4.85136 4.91444 4.93878 4.97175 4.99225 5.04104
5.05999 5.12071 5.15990 5.23879 5.29113 5.35721 5.38894 5.46442
5.57001 5.66359 5.73850 5.88547 6.33415 6.44124 6.55340 7.21091
7.39695 8.18842 8.41726 9.33331
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.015308 B = 0.002497 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1828.728009 B =11210.518905 C =11876.079242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.172 3.828
3 H 0.041 0.959
4 N -0.735 5.735
5 C -0.235 4.235
6 H 0.071 0.929
7 C -0.076 4.076
8 N -0.969 5.969
9 Si 0.967 3.033
10 H -0.279 1.279
11 H -0.297 1.297
12 H -0.282 1.282
13 C -0.079 4.079
14 C -0.117 4.117
15 C 0.115 3.885
16 N -0.599 5.599
17 C 0.598 3.402
18 O -0.581 6.581
19 C -0.312 4.312
20 C 0.079 3.921
21 N -0.319 5.319
22 N -0.358 5.358
23 C 0.145 3.855
24 C -0.061 4.061
25 C -0.124 4.124
26 C -0.130 4.130
27 C 0.117 3.883
28 C 0.111 3.889
29 C -0.119 4.119
30 H 0.041 0.959
31 H 0.067 0.933
32 H 0.029 0.971
33 H 0.375 0.625
34 H 0.249 0.751
35 H 0.066 0.934
36 H 0.065 0.935
37 H 0.088 0.912
38 H 0.087 0.913
39 H 0.080 0.920
40 H 0.206 0.794
41 H 0.085 0.915
42 H 0.098 0.902
43 H 0.070 0.930
44 H 0.104 0.896
45 H 0.126 0.874
46 H 0.075 0.925
47 H 0.106 0.894
48 H 0.098 0.902
49 H 0.083 0.917
50 H 0.093 0.907
51 H 0.059 0.941
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.193 -8.631 23.044 26.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.064 3.936
3 H 0.059 0.941
4 N -0.376 5.376
5 C -0.367 4.367
6 H 0.089 0.911
7 C -0.268 4.268
8 N -0.620 5.620
9 Si 0.796 3.204
10 H -0.205 1.205
11 H -0.223 1.223
12 H -0.208 1.208
13 C -0.099 4.099
14 C -0.155 4.155
15 C -0.006 4.006
16 N -0.331 5.331
17 C 0.388 3.612
18 O -0.462 6.462
19 C -0.327 4.327
20 C -0.108 4.108
21 N -0.138 5.138
22 N -0.139 5.139
23 C 0.013 3.987
24 C -0.100 4.100
25 C -0.161 4.161
26 C -0.168 4.168
27 C -0.002 4.002
28 C -0.011 4.011
29 C -0.157 4.157
30 H 0.061 0.939
31 H 0.086 0.914
32 H 0.048 0.952
33 H 0.208 0.792
34 H 0.058 0.942
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.107 0.893
38 H 0.105 0.895
39 H 0.098 0.902
40 H 0.222 0.778
41 H 0.103 0.897
42 H 0.116 0.884
43 H 0.089 0.911
44 H 0.123 0.877
45 H 0.144 0.856
46 H 0.094 0.906
47 H 0.124 0.876
48 H 0.116 0.884
49 H 0.102 0.898
50 H 0.111 0.889
51 H 0.078 0.922
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -10.350 -9.563 23.262 27.197
hybrid contribution 0.531 0.906 -1.471 1.807
sum -9.819 -8.657 21.791 25.420
Atomic orbital electron populations
1.22373 0.98437 1.00571 1.00136 1.20421 0.92390 0.94869 0.85941
0.94133 1.42684 1.78330 1.10507 1.06121 1.19571 1.34491 0.94058
0.88602 0.91081 1.25457 1.03340 0.96873 1.01142 1.69789 1.52867
1.10041 1.29300 0.85308 0.77787 0.77390 0.79870 1.20527 1.22343
1.20804 1.21247 0.99891 0.94746 0.93976 1.21910 1.01161 0.99805
0.92644 1.21659 1.00499 0.79547 0.98943 1.47970 1.56794 1.11074
1.17250 1.17435 0.76387 0.85985 0.81368 1.90701 1.53588 1.66027
1.35894 1.19842 0.98239 0.93960 1.20653 1.24400 1.00614 0.88404
0.97354 1.76997 0.92452 1.23523 1.20869 1.48898 1.12016 1.05559
1.47414 1.21740 0.97080 0.84747 0.95181 1.20616 0.88640 0.98630
1.02077 1.21752 0.97651 0.93871 1.02874 1.22011 0.98562 0.98129
0.98079 1.22342 0.87039 0.89193 1.01623 1.22057 1.00794 0.95369
0.82904 1.21907 1.00617 0.95960 0.97231 0.93946 0.91398 0.95219
0.79161 0.94195 0.91597 0.91591 0.89346 0.89465 0.90170 0.77753
0.89673 0.88378 0.91120 0.87725 0.85595 0.90590 0.87611 0.88404
0.89843 0.88936 0.92210 0.92150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.50 8.79 71.98 0.63 -4.86 16
2 C 0.17 6.54 2.72 44.99 0.12 6.67 16
3 H 0.04 1.59 8.08 -2.38 -0.02 1.57 16
4 N -0.74 -36.14 5.04 -322.95 -1.63 -37.77 16
5 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16
6 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16
7 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16
8 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16
9 Si 0.97 46.27 29.55 68.60 2.03 48.29 16
10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
13 C -0.08 -2.41 2.14 -10.77 -0.02 -2.43 16
14 C -0.12 -2.88 4.96 30.67 0.15 -2.72 16
15 C 0.12 2.73 6.44 86.36 0.56 3.29 16
16 N -0.60 -15.27 2.97 -821.93 -2.44 -17.71 16
17 C 0.60 16.94 7.47 86.66 0.65 17.59 16
18 O -0.58 -19.26 16.14 -4.05 -0.07 -19.32 16
19 C -0.31 -8.03 5.20 -20.25 -0.11 -8.13 16
20 C 0.08 1.88 9.63 85.67 0.82 2.70 16
21 N -0.32 -7.95 12.54 -56.07 -0.70 -8.65 16
22 N -0.36 -7.43 4.01 -332.23 -1.33 -8.76 16
23 C 0.15 3.26 6.65 41.96 0.28 3.54 16
24 C -0.06 -1.03 5.79 30.03 0.17 -0.85 16
25 C -0.12 -1.15 5.98 30.80 0.18 -0.97 16
26 C -0.13 -0.87 5.93 30.72 0.18 -0.69 16
27 C 0.12 1.35 7.26 86.42 0.63 1.98 16
28 C 0.11 2.73 5.51 86.51 0.48 3.21 16
29 C -0.12 -3.56 4.83 30.82 0.15 -3.41 16
30 H 0.04 1.53 6.46 -2.39 -0.02 1.51 16
31 H 0.07 1.98 6.46 -2.39 -0.02 1.96 16
32 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16
33 H 0.37 19.56 6.04 -92.71 -0.56 19.00 16
34 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16
35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
36 H 0.07 1.69 6.51 -2.39 -0.02 1.68 16
37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
38 H 0.09 2.16 7.00 -2.39 -0.02 2.14 16
39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
40 H 0.21 3.90 7.32 -2.91 -0.02 3.88 16
41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
43 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16
44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16
45 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16
46 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16
47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
48 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
49 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
50 H 0.09 2.21 4.74 -2.39 -0.01 2.20 16
51 H 0.06 1.86 6.51 -2.39 -0.02 1.84 16
52 H 0.06 2.12 6.46 -2.39 -0.02 2.11 16
Total: -1.00 -73.14 396.88 2.69 -70.45
By element:
Atomic # 1 Polarization: 32.79 SS G_CDS: 0.37 Total: 33.15 kcal
Atomic # 6 Polarization: -7.29 SS G_CDS: 6.18 Total: -1.11 kcal
Atomic # 7 Polarization: -125.65 SS G_CDS: -5.82 Total: -131.47 kcal
Atomic # 8 Polarization: -19.26 SS G_CDS: -0.07 Total: -19.32 kcal
Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal
Total: -73.14 2.69 -70.45 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664462105.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.190 kcal
(2) G-P(sol) polarization free energy of solvation -73.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds