Wall clock time and date at job start Wed Apr 1 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47305 * 2 1 4 4 N 1.46497 * 109.47307 * 240.00002 * 2 1 3 5 5 C 1.36942 * 120.00221 * 84.99759 * 4 2 1 6 6 H 1.07996 * 119.99534 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00160 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47109 * 120.00408 * 9 7 5 12 12 H 1.48500 * 109.47345 * 240.00685 * 9 7 5 13 13 C 1.52999 * 109.47067 * 120.00112 * 2 1 3 14 14 H 1.09001 * 109.52567 * 179.97438 * 13 2 1 15 15 C 1.53045 * 109.49476 * 299.99743 * 13 2 1 16 16 C 1.53043 * 109.53588 * 181.31318 * 15 13 2 17 17 C 1.53195 * 109.31457 * 298.64112 * 16 15 13 18 18 N 1.46922 * 108.77482 * 54.63338 * 17 16 15 19 19 C 1.34778 * 120.62734 * 126.37340 * 18 17 16 20 20 O 1.21571 * 119.99817 * 174.00073 * 19 18 17 21 21 C 1.47714 * 120.00319 * 353.99518 * 19 18 17 22 22 C 1.41501 * 126.51715 * 173.23625 * 21 19 18 23 23 C 1.35367 * 105.50065 * 179.90591 * 22 21 19 24 24 C 1.50693 * 126.38688 * 180.08903 * 23 22 21 25 25 C 1.53008 * 117.49867 * 33.94417 * 24 23 22 26 26 C 1.52998 * 117.49799 * 325.32397 * 24 23 22 27 27 N 1.35041 * 107.22737 * 0.35994 * 23 22 21 28 28 C 1.46500 * 124.88124 * 179.76177 * 27 23 22 29 29 N 1.28461 * 110.23056 * 359.76432 * 27 23 22 30 30 C 1.46923 * 118.73937 * 306.38874 * 18 17 16 31 31 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47517 * 300.00214 * 1 2 3 33 33 H 1.09007 * 109.46746 * 60.00000 * 1 2 3 34 34 H 0.96998 * 120.00036 * 265.00487 * 4 2 1 35 35 H 0.96998 * 119.99807 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.45852 * 61.30268 * 15 13 2 37 37 H 1.08991 * 109.46238 * 301.33842 * 15 13 2 38 38 H 1.09008 * 109.49224 * 58.59047 * 16 15 13 39 39 H 1.09001 * 109.49992 * 178.65195 * 16 15 13 40 40 H 1.09000 * 109.58175 * 174.41992 * 17 16 15 41 41 H 1.08999 * 109.58253 * 294.84251 * 17 16 15 42 42 H 1.07999 * 127.25021 * 0.02810 * 22 21 19 43 43 H 1.09001 * 115.55131 * 179.64955 * 24 23 22 44 44 H 1.09003 * 117.49748 * 0.02562 * 25 24 23 45 45 H 1.08997 * 117.49664 * 145.01982 * 25 24 23 46 46 H 1.09009 * 117.50040 * 214.97405 * 26 24 23 47 47 H 1.08997 * 117.50337 * 359.97438 * 26 24 23 48 48 H 1.08999 * 109.47193 * 269.97443 * 28 27 23 49 49 H 1.09001 * 109.47512 * 29.97899 * 28 27 23 50 50 H 1.09001 * 109.46805 * 149.98193 * 28 27 23 51 51 H 1.09005 * 109.58218 * 173.40110 * 30 18 17 52 52 H 1.09004 * 109.58861 * 293.68104 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5090 8 7 2.9255 -1.9387 -3.4499 9 14 2.7914 0.2703 -5.1179 10 1 2.3774 1.6827 -4.9205 11 1 4.2085 0.2275 -5.5597 12 1 1.9311 -0.3581 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 3.1300 -0.7222 1.2499 15 6 1.5302 -0.0002 2.4992 16 6 2.0666 -0.7016 3.7492 17 6 1.5533 -2.1447 3.7801 18 7 1.9149 -2.8024 2.5171 19 6 2.5905 -3.9686 2.5191 20 8 2.7887 -4.5580 1.4744 21 6 3.0902 -4.5305 3.7905 22 6 3.6931 -5.7978 3.9716 23 6 3.9868 -5.8734 5.2909 24 6 4.6458 -7.0313 5.9951 25 6 5.6945 -7.8277 5.2160 26 6 4.3204 -8.4401 5.4949 27 7 3.5736 -4.7203 5.8594 28 6 3.6998 -4.3954 7.2823 29 7 3.0540 -3.9493 4.9729 30 6 1.5263 -2.1645 1.2519 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 2.2490 -1.6317 -1.1526 35 1 3.2488 -2.3959 -4.2419 36 1 0.4404 -0.0205 2.5110 37 1 1.8739 1.0340 2.4874 38 1 3.1564 -0.7036 3.7258 39 1 1.7228 -0.1735 4.6386 40 1 2.0109 -2.6774 4.6137 41 1 0.4693 -2.1445 3.8948 42 1 3.8813 -6.5462 3.2161 43 1 4.8049 -6.9015 7.0656 44 1 5.9081 -7.5138 4.1942 45 1 6.5438 -8.2219 5.7740 46 1 4.2659 -9.2374 6.2363 47 1 3.6294 -8.5295 4.6567 48 1 2.8088 -4.7321 7.8123 49 1 4.5772 -4.8951 7.6927 50 1 3.8070 -3.3171 7.4006 51 1 1.9662 -2.7105 0.4172 52 1 0.4402 -2.1682 1.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667326986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:01 Heat of formation + Delta-G solvation = 94.323986 kcal Electronic energy + Delta-G solvation = -31173.701873 eV Core-core repulsion = 27176.663950 eV Total energy + Delta-G solvation = -3997.037923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.93456 -39.79715 -37.68631 -37.55814 -35.30757 -33.75492 -32.77787 -31.70905 -30.70828 -29.65091 -28.13532 -27.43418 -25.41482 -24.47420 -23.78359 -22.98389 -22.77135 -22.46022 -20.97576 -20.35799 -19.20349 -18.44525 -17.49878 -17.08655 -16.63272 -16.46831 -15.55841 -15.38960 -14.88923 -14.65746 -14.60268 -14.44394 -14.19449 -13.78864 -13.65265 -13.52784 -13.26055 -13.00152 -12.83149 -12.71477 -12.59607 -12.30166 -12.19138 -11.94932 -11.75138 -11.52228 -11.42311 -11.39161 -10.95829 -10.89140 -10.79925 -10.50683 -10.35078 -10.24615 -10.08947 -10.04617 -9.85433 -9.56415 -9.40394 -9.21693 -8.95299 -8.80596 -8.23993 -6.83754 -5.63331 -2.92779 1.45540 1.90869 2.17326 3.24297 3.49260 3.50866 3.55653 3.58483 3.60471 3.95050 4.14162 4.43032 4.52085 4.55894 4.63070 4.67974 4.69201 4.94405 5.01444 5.12950 5.15336 5.21970 5.25634 5.28209 5.40310 5.50366 5.56452 5.57386 5.69183 5.73418 5.75841 5.82015 5.87778 5.89943 6.00928 6.04739 6.11652 6.23440 6.26699 6.31940 6.38931 6.48893 6.55366 6.60592 6.72463 6.80932 6.97262 7.00695 7.23634 7.62458 7.81308 7.82868 8.44839 8.54405 9.65097 10.24128 10.58274 11.58880 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002581 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.531126 B =10844.967066 C =12342.595625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.076 3.924 18 N -0.596 5.596 19 C 0.595 3.405 20 O -0.523 6.523 21 C 0.004 3.996 22 C -0.177 4.177 23 C 0.048 3.952 24 C -0.099 4.099 25 C -0.162 4.162 26 C -0.161 4.161 27 N -0.286 5.286 28 C 0.085 3.915 29 N -0.262 5.262 30 C 0.117 3.883 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.132 0.868 41 H 0.058 0.942 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -8.317 29.038 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.048 4.048 18 N -0.329 5.329 19 C 0.380 3.620 20 O -0.397 6.397 21 C -0.156 4.156 22 C -0.204 4.204 23 C -0.077 4.077 24 C -0.119 4.119 25 C -0.199 4.199 26 C -0.199 4.199 27 N -0.072 5.072 28 C -0.056 4.056 29 N -0.096 5.096 30 C -0.004 4.004 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.076 0.924 42 H 0.178 0.822 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.103 0.897 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.966 -7.492 28.989 29.957 hybrid contribution 0.356 -0.326 -1.197 1.291 sum 1.322 -7.818 27.791 28.900 Atomic orbital electron populations 1.22570 0.99553 1.00885 0.99887 1.20171 0.91806 0.95235 0.85798 0.93377 1.42535 1.78097 1.10858 1.05302 1.19263 1.36398 0.93817 0.87386 0.91237 1.24750 1.02357 0.95964 0.97984 1.69691 1.50809 1.08560 1.28640 0.86162 0.77231 0.78730 0.84339 1.20675 1.22001 1.21979 1.21763 1.00886 0.94273 0.95305 0.90952 1.21643 1.00789 0.99042 0.93849 1.21847 1.01179 0.95372 0.98223 1.22613 1.00032 0.94320 0.87834 1.47962 1.55179 1.21507 1.08219 1.17030 0.78091 0.80773 0.86103 1.90854 1.57767 1.59543 1.31513 1.22001 1.06256 0.95375 0.91970 1.21411 1.05650 0.98423 0.94955 1.20400 1.04488 0.89837 0.92948 1.20276 1.04132 0.89193 0.98302 1.23118 0.92732 1.02171 1.01907 1.23104 0.99343 0.93756 1.03705 1.45435 1.42069 1.11177 1.08556 1.22148 1.03870 1.04367 0.75174 1.73185 1.17900 1.20283 0.98253 1.21839 0.99900 0.93254 0.85404 0.93278 0.94262 0.92952 0.78007 0.93593 0.91562 0.91887 0.91885 0.91415 0.85107 0.92380 0.82180 0.86726 0.87765 0.87993 0.88025 0.87859 0.89740 0.88859 0.88424 0.88163 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.79 37.16 0.33 -2.80 16 2 C 0.18 3.70 2.72 -67.93 -0.18 3.52 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.73 -18.96 5.04 -53.43 -0.27 -19.22 16 5 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -29.44 13.06 55.49 0.72 -28.71 16 9 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 C -0.10 -1.81 2.33 -90.50 -0.21 -2.02 16 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.12 -1.59 4.78 -26.69 -0.13 -1.72 16 16 C -0.13 -1.56 6.08 -26.61 -0.16 -1.73 16 17 C 0.08 1.00 6.33 -3.71 -0.02 0.97 16 18 N -0.60 -9.98 2.97 -173.93 -0.52 -10.49 16 19 C 0.59 10.93 7.69 -12.39 -0.10 10.83 16 20 O -0.52 -11.61 16.37 5.30 0.09 -11.52 16 21 C 0.00 0.05 6.87 -82.76 -0.57 -0.51 16 22 C -0.18 -2.31 9.86 -39.36 -0.39 -2.70 16 23 C 0.05 0.48 6.60 -82.21 -0.54 -0.07 16 24 C -0.10 -0.66 5.94 -91.77 -0.55 -1.20 16 25 C -0.16 -1.00 10.05 -26.73 -0.27 -1.27 16 26 C -0.16 -0.97 10.05 -26.73 -0.27 -1.24 16 27 N -0.29 -2.77 3.70 -63.85 -0.24 -3.01 16 28 C 0.08 0.38 11.05 59.85 0.66 1.05 16 29 N -0.26 -3.30 8.37 33.42 0.28 -3.02 16 30 C 0.12 2.18 5.19 -3.71 -0.02 2.16 16 31 H 0.05 0.92 6.32 -51.93 -0.33 0.59 16 32 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 10.86 6.17 -40.82 -0.25 10.61 16 35 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 36 H 0.07 0.87 6.50 -51.93 -0.34 0.53 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.13 1.65 3.75 -109.16 -0.41 1.24 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.11 0.49 7.16 -51.93 -0.37 0.12 16 44 H 0.10 0.78 7.95 -51.93 -0.41 0.36 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.10 0.72 7.96 -51.93 -0.41 0.31 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 49 H 0.09 0.21 7.12 -51.93 -0.37 -0.15 16 50 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 2.26 5.63 -51.93 -0.29 1.97 16 52 H 0.07 1.25 6.18 -51.93 -0.32 0.93 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -36.06 405.07 -9.97 -46.04 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.46 Total: 9.87 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.66 Total: -4.22 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.02 Total: -64.46 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.06 -9.97 -46.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667326986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.361 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds