Wall clock time and date at job start Wed Apr 1 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47305 * 2 1 4 4 N 1.46497 * 109.47307 * 240.00002 * 2 1 3 5 5 C 1.36942 * 120.00221 * 84.99759 * 4 2 1 6 6 H 1.07996 * 119.99534 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00160 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47109 * 120.00408 * 9 7 5 12 12 H 1.48500 * 109.47345 * 240.00685 * 9 7 5 13 13 C 1.52999 * 109.47067 * 120.00112 * 2 1 3 14 14 H 1.09001 * 109.52567 * 179.97438 * 13 2 1 15 15 C 1.53045 * 109.49476 * 299.99743 * 13 2 1 16 16 C 1.53043 * 109.53588 * 181.31318 * 15 13 2 17 17 C 1.53195 * 109.31457 * 298.64112 * 16 15 13 18 18 N 1.46922 * 108.77482 * 54.63338 * 17 16 15 19 19 C 1.34778 * 120.62734 * 126.37340 * 18 17 16 20 20 O 1.21571 * 119.99817 * 174.00073 * 19 18 17 21 21 C 1.47714 * 120.00319 * 353.99518 * 19 18 17 22 22 C 1.41501 * 126.51715 * 173.23625 * 21 19 18 23 23 C 1.35367 * 105.50065 * 179.90591 * 22 21 19 24 24 C 1.50693 * 126.38688 * 180.08903 * 23 22 21 25 25 C 1.53008 * 117.49867 * 33.94417 * 24 23 22 26 26 C 1.52998 * 117.49799 * 325.32397 * 24 23 22 27 27 N 1.35041 * 107.22737 * 0.35994 * 23 22 21 28 28 C 1.46500 * 124.88124 * 179.76177 * 27 23 22 29 29 N 1.28461 * 110.23056 * 359.76432 * 27 23 22 30 30 C 1.46923 * 118.73937 * 306.38874 * 18 17 16 31 31 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47517 * 300.00214 * 1 2 3 33 33 H 1.09007 * 109.46746 * 60.00000 * 1 2 3 34 34 H 0.96998 * 120.00036 * 265.00487 * 4 2 1 35 35 H 0.96998 * 119.99807 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.45852 * 61.30268 * 15 13 2 37 37 H 1.08991 * 109.46238 * 301.33842 * 15 13 2 38 38 H 1.09008 * 109.49224 * 58.59047 * 16 15 13 39 39 H 1.09001 * 109.49992 * 178.65195 * 16 15 13 40 40 H 1.09000 * 109.58175 * 174.41992 * 17 16 15 41 41 H 1.08999 * 109.58253 * 294.84251 * 17 16 15 42 42 H 1.07999 * 127.25021 * 0.02810 * 22 21 19 43 43 H 1.09001 * 115.55131 * 179.64955 * 24 23 22 44 44 H 1.09003 * 117.49748 * 0.02562 * 25 24 23 45 45 H 1.08997 * 117.49664 * 145.01982 * 25 24 23 46 46 H 1.09009 * 117.50040 * 214.97405 * 26 24 23 47 47 H 1.08997 * 117.50337 * 359.97438 * 26 24 23 48 48 H 1.08999 * 109.47193 * 269.97443 * 28 27 23 49 49 H 1.09001 * 109.47512 * 29.97899 * 28 27 23 50 50 H 1.09001 * 109.46805 * 149.98193 * 28 27 23 51 51 H 1.09005 * 109.58218 * 173.40110 * 30 18 17 52 52 H 1.09004 * 109.58861 * 293.68104 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5090 8 7 2.9255 -1.9387 -3.4499 9 14 2.7914 0.2703 -5.1179 10 1 2.3774 1.6827 -4.9205 11 1 4.2085 0.2275 -5.5597 12 1 1.9311 -0.3581 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 3.1300 -0.7222 1.2499 15 6 1.5302 -0.0002 2.4992 16 6 2.0666 -0.7016 3.7492 17 6 1.5533 -2.1447 3.7801 18 7 1.9149 -2.8024 2.5171 19 6 2.5905 -3.9686 2.5191 20 8 2.7887 -4.5580 1.4744 21 6 3.0902 -4.5305 3.7905 22 6 3.6931 -5.7978 3.9716 23 6 3.9868 -5.8734 5.2909 24 6 4.6458 -7.0313 5.9951 25 6 5.6945 -7.8277 5.2160 26 6 4.3204 -8.4401 5.4949 27 7 3.5736 -4.7203 5.8594 28 6 3.6998 -4.3954 7.2823 29 7 3.0540 -3.9493 4.9729 30 6 1.5263 -2.1645 1.2519 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 2.2490 -1.6317 -1.1526 35 1 3.2488 -2.3959 -4.2419 36 1 0.4404 -0.0205 2.5110 37 1 1.8739 1.0340 2.4874 38 1 3.1564 -0.7036 3.7258 39 1 1.7228 -0.1735 4.6386 40 1 2.0109 -2.6774 4.6137 41 1 0.4693 -2.1445 3.8948 42 1 3.8813 -6.5462 3.2161 43 1 4.8049 -6.9015 7.0656 44 1 5.9081 -7.5138 4.1942 45 1 6.5438 -8.2219 5.7740 46 1 4.2659 -9.2374 6.2363 47 1 3.6294 -8.5295 4.6567 48 1 2.8088 -4.7321 7.8123 49 1 4.5772 -4.8951 7.6927 50 1 3.8070 -3.3171 7.4006 51 1 1.9662 -2.7105 0.4172 52 1 0.4402 -2.1682 1.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667326986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:00 Heat of formation + Delta-G solvation = 70.906320 kcal Electronic energy + Delta-G solvation = -31174.717339 eV Core-core repulsion = 27176.663950 eV Total energy + Delta-G solvation = -3998.053389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.83826 -41.16688 -39.14590 -38.14758 -36.94938 -34.85681 -34.30937 -33.19535 -31.75426 -31.23370 -29.61121 -28.45357 -26.61028 -26.21144 -24.87441 -24.36646 -23.51440 -23.23500 -22.27592 -21.29817 -20.44687 -19.78639 -19.21075 -18.31288 -17.76332 -17.31339 -16.96447 -16.70520 -16.09131 -16.00781 -15.82760 -15.51526 -15.44880 -15.28717 -14.99415 -14.71267 -14.42206 -14.23771 -14.05540 -13.90735 -13.56596 -13.40898 -13.32276 -12.98863 -12.87688 -12.83479 -12.65925 -12.58608 -12.40821 -12.17028 -12.03446 -12.00032 -11.79948 -11.79398 -11.56836 -11.43562 -11.35877 -11.20132 -10.95546 -10.74226 -10.16552 -9.78527 -9.58397 -9.00842 -7.91666 -5.21655 0.40608 0.94856 1.44290 1.44366 1.46663 1.56513 1.99551 2.25554 2.56212 3.02972 3.13369 3.40742 3.45432 3.63988 3.78462 3.89088 3.95673 3.97217 4.07317 4.07763 4.13479 4.20513 4.33713 4.37467 4.41320 4.42188 4.51873 4.61394 4.63077 4.69389 4.70390 4.74061 4.82354 4.84129 4.89989 4.96224 5.03114 5.09104 5.11049 5.13189 5.18900 5.21785 5.27166 5.29300 5.36998 5.45378 5.53743 5.57715 5.68161 5.90491 6.29216 6.34173 6.81469 7.09820 7.33771 8.12076 8.33851 9.32137 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002581 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.531126 B =10844.967066 C =12342.595625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.080 0.920 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.975 3.025 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.090 4.090 14 H 0.043 0.957 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.070 3.930 18 N -0.594 5.594 19 C 0.584 3.416 20 O -0.583 6.583 21 C -0.031 4.031 22 C -0.206 4.206 23 C 0.064 3.936 24 C -0.100 4.100 25 C -0.164 4.164 26 C -0.159 4.159 27 N -0.272 5.272 28 C 0.069 3.931 29 N -0.257 5.257 30 C 0.125 3.875 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.124 0.876 50 H 0.108 0.892 51 H 0.048 0.952 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -6.863 33.637 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.067 0.933 4 N -0.383 5.383 5 C -0.366 4.366 6 H 0.098 0.902 7 C -0.276 4.276 8 N -0.625 5.625 9 Si 0.804 3.196 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.222 1.222 13 C -0.110 4.110 14 H 0.061 0.939 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.051 4.051 18 N -0.325 5.325 19 C 0.372 3.628 20 O -0.461 6.461 21 C -0.189 4.189 22 C -0.234 4.234 23 C -0.062 4.062 24 C -0.119 4.119 25 C -0.202 4.202 26 C -0.196 4.196 27 N -0.059 5.059 28 C -0.069 4.069 29 N -0.093 5.093 30 C 0.003 3.997 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.094 0.906 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.100 0.900 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.102 0.898 48 H 0.126 0.874 49 H 0.142 0.858 50 H 0.126 0.874 51 H 0.067 0.933 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.416 -5.956 33.670 34.195 hybrid contribution 0.526 -0.790 -2.442 2.620 sum 0.942 -6.746 31.228 31.962 Atomic orbital electron populations 1.22395 0.97242 1.00817 1.01183 1.20465 0.93293 0.94881 0.84912 0.93264 1.42825 1.78488 1.10368 1.06608 1.19708 1.34416 0.94225 0.88270 0.90250 1.25646 1.03268 0.96880 1.01800 1.69894 1.52903 1.10515 1.29218 0.85040 0.76631 0.78259 0.79658 1.18570 1.22349 1.22216 1.21594 0.99040 0.93899 0.96437 0.93874 1.21633 1.01736 0.99280 0.91940 1.21828 1.00366 0.94619 0.98965 1.22927 1.01273 0.94835 0.86102 1.48078 1.54470 1.21137 1.08854 1.17604 0.77615 0.80805 0.86784 1.90803 1.60114 1.61302 1.33897 1.21542 1.09014 0.96660 0.91646 1.21471 1.07235 0.97999 0.96698 1.20764 1.02853 0.90694 0.91874 1.20532 1.03829 0.87802 0.99752 1.23166 0.93691 1.02204 1.01142 1.23163 0.98661 0.94121 1.03694 1.45962 1.39648 1.10325 1.09950 1.22727 1.06476 1.05771 0.71927 1.73017 1.18113 1.20523 0.97668 1.21556 0.99758 0.93317 0.85075 0.94033 0.89955 0.94545 0.79859 0.94298 0.89799 0.90346 0.93201 0.87293 0.84187 0.90581 0.83514 0.82998 0.90031 0.85568 0.85442 0.89766 0.87418 0.85813 0.87367 0.93346 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 8.79 71.98 0.63 -5.01 16 2 C 0.17 7.18 2.72 44.99 0.12 7.30 16 3 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 4 N -0.74 -40.59 5.04 -322.95 -1.63 -42.21 16 5 C -0.23 -13.80 9.93 84.03 0.83 -12.96 16 6 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 7 C -0.08 -5.19 5.50 84.86 0.47 -4.72 16 8 N -0.97 -65.01 13.06 21.65 0.28 -64.72 16 9 Si 0.97 49.06 29.55 68.60 2.03 51.09 16 10 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 12 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 13 C -0.09 -3.24 2.33 -10.72 -0.02 -3.27 16 14 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 15 C -0.11 -2.70 4.78 30.62 0.15 -2.55 16 16 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 17 C 0.07 1.75 6.33 86.36 0.55 2.29 16 18 N -0.59 -20.81 2.97 -822.46 -2.44 -23.25 16 19 C 0.58 23.38 7.69 86.75 0.67 24.05 16 20 O -0.58 -29.04 16.37 -3.94 -0.06 -29.10 16 21 C -0.03 -1.00 6.87 42.46 0.29 -0.71 16 22 C -0.21 -5.76 9.86 22.41 0.22 -5.54 16 23 C 0.06 1.21 6.60 41.40 0.27 1.48 16 24 C -0.10 -1.05 5.94 -11.54 -0.07 -1.12 16 25 C -0.16 -1.80 10.05 30.60 0.31 -1.50 16 26 C -0.16 -1.64 10.05 30.59 0.31 -1.33 16 27 N -0.27 -4.64 3.70 -355.92 -1.32 -5.95 16 28 C 0.07 0.32 11.05 127.77 1.41 1.73 16 29 N -0.26 -6.23 8.37 -48.17 -0.40 -6.63 16 30 C 0.13 4.94 5.19 86.36 0.45 5.39 16 31 H 0.04 1.54 6.32 -2.39 -0.02 1.53 16 32 H 0.08 2.25 6.46 -2.39 -0.02 2.23 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.37 22.44 6.17 -92.71 -0.57 21.86 16 35 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 36 H 0.08 1.85 6.50 -2.39 -0.02 1.83 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.14 3.29 3.75 -76.42 -0.29 3.01 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.15 0.50 7.16 -2.39 -0.02 0.48 16 44 H 0.08 1.28 7.95 -2.39 -0.02 1.26 16 45 H 0.13 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.08 1.21 7.96 -2.39 -0.02 1.19 16 48 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.12 -0.11 7.12 -2.39 -0.02 -0.13 16 50 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.05 2.42 5.63 -2.38 -0.01 2.41 16 52 H 0.08 2.90 6.18 -2.39 -0.01 2.88 16 Total: -1.00 -87.04 405.07 3.31 -83.73 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.08 Total: 35.93 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.77 Total: 1.13 kcal Atomic # 7 Polarization: -137.27 SS G_CDS: -5.51 Total: -142.78 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.06 Total: -29.10 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -87.04 3.31 -83.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667326986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.639 kcal (2) G-P(sol) polarization free energy of solvation -87.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds