Wall clock time and date at job start Wed Apr 1 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46980 * 2 1 4 4 N 1.46501 * 109.46745 * 119.99624 * 2 1 3 5 5 C 1.36941 * 120.00070 * 274.99933 * 4 2 1 6 6 H 1.07993 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00544 * 180.02562 * 7 5 4 9 9 Si 1.86810 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46866 * 90.00168 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99434 * 9 7 5 12 12 H 1.48495 * 109.47282 * 329.99747 * 9 7 5 13 13 C 1.52989 * 109.47385 * 240.00045 * 2 1 3 14 14 H 1.09003 * 109.49981 * 300.06268 * 13 2 1 15 15 C 1.53040 * 109.50124 * 60.16175 * 13 2 1 16 16 C 1.53038 * 109.54298 * 181.31887 * 15 13 2 17 17 C 1.53201 * 109.30890 * 298.63601 * 16 15 13 18 18 N 1.46925 * 108.77729 * 54.63390 * 17 16 15 19 19 C 1.34770 * 120.63201 * 126.36679 * 18 17 16 20 20 O 1.21568 * 120.00046 * 174.24203 * 19 18 17 21 21 C 1.47711 * 120.00035 * 354.24895 * 19 18 17 22 22 C 1.41504 * 126.51868 * 173.48777 * 21 19 18 23 23 C 1.35363 * 105.50040 * 179.89796 * 22 21 19 24 24 C 1.50704 * 126.38344 * 180.08106 * 23 22 21 25 25 C 1.52997 * 117.49655 * 33.95379 * 24 23 22 26 26 C 1.52991 * 117.50192 * 325.32767 * 24 23 22 27 27 N 1.35038 * 107.23308 * 0.35968 * 23 22 21 28 28 C 1.46498 * 124.88493 * 179.76272 * 27 23 22 29 29 N 1.28465 * 110.22616 * 359.76202 * 27 23 22 30 30 C 1.46926 * 118.73777 * 306.39354 * 18 17 16 31 31 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47789 * 300.00315 * 1 2 3 33 33 H 1.09004 * 109.47009 * 60.00416 * 1 2 3 34 34 H 0.97001 * 120.00008 * 95.00549 * 4 2 1 35 35 H 0.96994 * 120.00986 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.45832 * 301.34108 * 15 13 2 37 37 H 1.09000 * 109.45946 * 61.29418 * 15 13 2 38 38 H 1.08994 * 109.50077 * 178.68816 * 16 15 13 39 39 H 1.09001 * 109.52438 * 58.60002 * 16 15 13 40 40 H 1.08999 * 109.58356 * 294.84668 * 17 16 15 41 41 H 1.09004 * 109.69834 * 174.49122 * 17 16 15 42 42 H 1.07998 * 127.25181 * 0.02562 * 22 21 19 43 43 H 1.09006 * 115.55006 * 179.64948 * 24 23 22 44 44 H 1.08999 * 117.50336 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.50248 * 145.02038 * 25 24 23 46 46 H 1.09003 * 117.50403 * 214.97810 * 26 24 23 47 47 H 1.09006 * 117.50164 * 359.97438 * 26 24 23 48 48 H 1.09007 * 109.46954 * 269.97030 * 28 27 23 49 49 H 1.08995 * 109.47317 * 29.97167 * 28 27 23 50 50 H 1.09004 * 109.46479 * 149.97696 * 28 27 23 51 51 H 1.09007 * 109.58577 * 293.81842 * 30 18 17 52 52 H 1.09000 * 109.58887 * 173.40189 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6111 -0.6618 3.5094 8 7 2.7363 -0.0054 4.6433 9 14 3.0553 -2.4744 3.4255 10 1 4.4881 -2.6165 3.0624 11 1 2.8152 -3.1046 4.7486 12 1 2.2158 -3.1428 2.3991 13 6 2.0400 -0.7212 -1.2491 14 1 1.6760 -1.7486 -1.2502 15 6 1.5336 0.0021 -2.4992 16 6 2.0160 -0.7374 -3.7492 17 6 3.5477 -0.7380 -3.7780 18 7 4.0443 -1.3004 -2.5148 19 6 4.9161 -2.3282 -2.5165 20 8 5.4001 -2.7164 -1.4711 21 6 5.2838 -2.9827 -3.7886 22 6 6.2727 -3.9788 -3.9680 23 6 6.2528 -4.2745 -5.2888 24 6 7.1234 -5.2837 -5.9922 25 6 7.5119 -6.5440 -5.2165 26 6 8.5557 -5.4577 -5.4834 27 7 5.3119 -3.4921 -5.8598 28 6 4.9728 -3.4940 -7.2850 29 7 4.7569 -2.7460 -4.9735 30 6 3.5719 -0.7216 -1.2497 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1527 35 1 3.0589 -0.4627 5.4355 36 1 0.4439 0.0253 -2.4888 37 1 1.9182 1.0219 -2.5095 38 1 1.6356 -0.2351 -4.6386 39 1 1.6522 -1.7647 -3.7278 40 1 3.9113 0.2833 -3.8912 41 1 3.8993 -1.3456 -4.6119 42 1 6.9079 -4.4133 -3.2104 43 1 6.9544 -5.3844 -7.0643 44 1 7.1382 -6.6430 -4.1974 45 1 7.5985 -7.4741 -5.7782 46 1 9.3291 -5.6731 -6.2207 47 1 8.8687 -4.8419 -4.6402 48 1 5.5951 -2.7674 -7.8075 49 1 5.1481 -4.4869 -7.6990 50 1 3.9228 -3.2288 -7.4089 51 1 3.9376 0.3011 -1.1567 52 1 3.9376 -1.3197 -0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667326987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:06 Heat of formation + Delta-G solvation = 95.092649 kcal Electronic energy + Delta-G solvation = -31254.873938 eV Core-core repulsion = 27257.869347 eV Total energy + Delta-G solvation = -3997.004591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.01148 -39.85692 -37.74585 -37.62837 -35.48842 -33.83826 -32.84137 -31.70232 -30.83104 -30.05310 -28.71838 -27.62716 -25.44063 -24.38045 -23.66053 -22.82848 -22.73036 -22.39020 -20.86282 -20.30610 -19.70024 -18.91327 -17.64608 -17.34258 -16.74122 -16.54835 -15.63073 -15.45859 -15.02651 -14.80151 -14.66473 -14.34472 -14.23250 -14.00659 -13.79969 -13.42386 -13.19893 -12.98320 -12.88958 -12.83786 -12.63676 -12.34161 -12.27014 -12.15979 -12.00697 -11.55957 -11.48366 -11.38880 -11.06264 -10.98581 -10.88793 -10.71700 -10.66022 -10.28078 -10.15126 -9.99651 -9.92944 -9.60040 -9.45215 -9.29969 -9.02733 -8.82458 -8.37092 -7.15606 -5.66470 -3.01263 1.37461 1.82544 2.10091 3.14874 3.41288 3.51614 3.52359 3.55703 3.60849 3.88252 4.07336 4.36948 4.45440 4.50080 4.55948 4.63459 4.71939 4.88327 4.88947 5.05067 5.06902 5.12000 5.17230 5.20140 5.29116 5.43298 5.45563 5.48971 5.59562 5.67474 5.67865 5.71872 5.75476 5.78886 5.90046 5.98387 6.03463 6.15444 6.17652 6.24330 6.27143 6.40454 6.43881 6.49746 6.58172 6.63329 6.86663 6.91357 7.09723 7.53003 7.74363 8.09757 8.33881 8.52837 9.31773 10.05098 10.24783 11.51943 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002936 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.265868 B = 9535.948329 C =11262.869988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.239 4.239 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.936 5.936 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.068 0.932 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.074 3.926 18 N -0.597 5.597 19 C 0.596 3.404 20 O -0.528 6.528 21 C 0.002 3.998 22 C -0.177 4.177 23 C 0.048 3.952 24 C -0.100 4.100 25 C -0.162 4.162 26 C -0.161 4.161 27 N -0.285 5.285 28 C 0.085 3.915 29 N -0.261 5.261 30 C 0.122 3.878 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.361 0.639 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.070 0.930 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 -9.042 -31.937 33.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.369 4.369 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.584 5.584 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.086 0.914 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.049 4.049 18 N -0.329 5.329 19 C 0.381 3.619 20 O -0.402 6.402 21 C -0.157 4.157 22 C -0.205 4.205 23 C -0.076 4.076 24 C -0.119 4.119 25 C -0.199 4.199 26 C -0.199 4.199 27 N -0.072 5.072 28 C -0.056 4.056 29 N -0.096 5.096 30 C 0.000 4.000 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.194 0.806 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.178 0.822 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.103 0.897 49 H 0.112 0.888 50 H 0.116 0.884 51 H 0.088 0.912 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.703 -8.402 -31.851 33.430 hybrid contribution 0.680 -1.675 0.364 1.844 sum 6.383 -10.077 -31.487 33.671 Atomic orbital electron populations 1.22444 0.98830 1.00785 1.00378 1.20150 0.91972 0.95572 0.84765 0.92575 1.42838 1.79750 1.09428 1.07171 1.19039 1.36726 0.95426 0.85697 0.89242 1.24627 1.01428 0.97362 0.95563 1.69695 1.52922 1.35556 1.00243 0.86620 0.78992 0.86876 0.76531 1.20696 1.21920 1.20406 1.21802 0.94687 1.00453 0.95654 0.91350 1.21635 1.00941 0.99138 0.93573 1.21842 0.95351 1.01087 0.98291 1.22645 0.94564 0.99978 0.87745 1.47994 1.43687 1.32879 1.08353 1.17025 0.79206 0.79514 0.86125 1.90835 1.53468 1.64296 1.31610 1.21975 1.00231 1.01621 0.91910 1.21404 1.02755 1.01358 0.94967 1.20409 0.95995 0.98312 0.92871 1.20281 0.96448 0.96887 0.98305 1.23115 1.02511 0.92400 1.01903 1.23107 0.90724 1.02353 1.03696 1.45446 1.26175 1.27073 1.08473 1.22161 1.04011 1.04405 0.75014 1.73180 1.21816 1.16356 0.98205 1.21727 0.93823 0.99275 0.85127 0.93764 0.92421 0.93958 0.80607 0.93176 0.91263 0.91759 0.91265 0.91933 0.92220 0.85046 0.82211 0.86680 0.87830 0.87958 0.87973 0.87866 0.89671 0.88826 0.88394 0.91173 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.19 3.61 2.47 -67.94 -0.17 3.44 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.75 -18.30 4.32 -53.43 -0.23 -18.53 16 5 C -0.24 -6.90 10.41 -15.06 -0.16 -7.06 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.94 -30.32 13.97 55.49 0.78 -29.54 16 9 Si 0.88 23.67 27.74 -169.99 -4.71 18.95 16 10 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.29 -7.90 7.11 56.52 0.40 -7.49 16 12 H -0.28 -7.16 6.52 56.52 0.37 -6.80 16 13 C -0.11 -1.75 1.97 -90.51 -0.18 -1.93 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.11 -1.48 4.85 -26.69 -0.13 -1.61 16 16 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 17 C 0.07 0.93 6.33 -3.71 -0.02 0.91 16 18 N -0.60 -9.61 2.97 -173.92 -0.52 -10.12 16 19 C 0.60 10.54 7.69 -12.39 -0.10 10.44 16 20 O -0.53 -11.31 16.37 5.31 0.09 -11.22 16 21 C 0.00 0.03 6.88 -82.76 -0.57 -0.54 16 22 C -0.18 -2.22 9.86 -39.36 -0.39 -2.61 16 23 C 0.05 0.46 6.60 -82.20 -0.54 -0.08 16 24 C -0.10 -0.62 5.94 -91.78 -0.55 -1.16 16 25 C -0.16 -0.93 10.05 -26.73 -0.27 -1.20 16 26 C -0.16 -0.91 10.05 -26.73 -0.27 -1.18 16 27 N -0.29 -2.62 3.70 -63.85 -0.24 -2.86 16 28 C 0.08 0.35 11.05 59.85 0.66 1.01 16 29 N -0.26 -3.14 8.37 33.42 0.28 -2.86 16 30 C 0.12 2.19 5.45 -3.71 -0.02 2.17 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.62 6.41 -51.93 -0.33 0.28 16 34 H 0.36 9.00 5.47 -40.82 -0.22 8.78 16 35 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 36 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.13 1.58 3.74 -110.46 -0.41 1.17 16 42 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.12 0.45 7.16 -51.93 -0.37 0.07 16 44 H 0.10 0.72 7.95 -51.93 -0.41 0.31 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.69 7.97 -51.93 -0.41 0.28 16 48 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 0.17 7.12 -51.93 -0.37 -0.20 16 50 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 52 H 0.10 2.14 6.55 -51.93 -0.34 1.80 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -36.61 407.45 -9.74 -46.35 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.71 Total: 7.23 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.61 Total: -3.53 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.07 Total: -63.92 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.71 Total: 18.95 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.61 -9.74 -46.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667326987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.444 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds