Wall clock time and date at job start Wed Apr 1 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46980 * 2 1 4 4 N 1.46501 * 109.46745 * 119.99624 * 2 1 3 5 5 C 1.36941 * 120.00070 * 274.99933 * 4 2 1 6 6 H 1.07993 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00544 * 180.02562 * 7 5 4 9 9 Si 1.86810 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46866 * 90.00168 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99434 * 9 7 5 12 12 H 1.48495 * 109.47282 * 329.99747 * 9 7 5 13 13 C 1.52989 * 109.47385 * 240.00045 * 2 1 3 14 14 H 1.09003 * 109.49981 * 300.06268 * 13 2 1 15 15 C 1.53040 * 109.50124 * 60.16175 * 13 2 1 16 16 C 1.53038 * 109.54298 * 181.31887 * 15 13 2 17 17 C 1.53201 * 109.30890 * 298.63601 * 16 15 13 18 18 N 1.46925 * 108.77729 * 54.63390 * 17 16 15 19 19 C 1.34770 * 120.63201 * 126.36679 * 18 17 16 20 20 O 1.21568 * 120.00046 * 174.24203 * 19 18 17 21 21 C 1.47711 * 120.00035 * 354.24895 * 19 18 17 22 22 C 1.41504 * 126.51868 * 173.48777 * 21 19 18 23 23 C 1.35363 * 105.50040 * 179.89796 * 22 21 19 24 24 C 1.50704 * 126.38344 * 180.08106 * 23 22 21 25 25 C 1.52997 * 117.49655 * 33.95379 * 24 23 22 26 26 C 1.52991 * 117.50192 * 325.32767 * 24 23 22 27 27 N 1.35038 * 107.23308 * 0.35968 * 23 22 21 28 28 C 1.46498 * 124.88493 * 179.76272 * 27 23 22 29 29 N 1.28465 * 110.22616 * 359.76202 * 27 23 22 30 30 C 1.46926 * 118.73777 * 306.39354 * 18 17 16 31 31 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47789 * 300.00315 * 1 2 3 33 33 H 1.09004 * 109.47009 * 60.00416 * 1 2 3 34 34 H 0.97001 * 120.00008 * 95.00549 * 4 2 1 35 35 H 0.96994 * 120.00986 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.45832 * 301.34108 * 15 13 2 37 37 H 1.09000 * 109.45946 * 61.29418 * 15 13 2 38 38 H 1.08994 * 109.50077 * 178.68816 * 16 15 13 39 39 H 1.09001 * 109.52438 * 58.60002 * 16 15 13 40 40 H 1.08999 * 109.58356 * 294.84668 * 17 16 15 41 41 H 1.09004 * 109.69834 * 174.49122 * 17 16 15 42 42 H 1.07998 * 127.25181 * 0.02562 * 22 21 19 43 43 H 1.09006 * 115.55006 * 179.64948 * 24 23 22 44 44 H 1.08999 * 117.50336 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.50248 * 145.02038 * 25 24 23 46 46 H 1.09003 * 117.50403 * 214.97810 * 26 24 23 47 47 H 1.09006 * 117.50164 * 359.97438 * 26 24 23 48 48 H 1.09007 * 109.46954 * 269.97030 * 28 27 23 49 49 H 1.08995 * 109.47317 * 29.97167 * 28 27 23 50 50 H 1.09004 * 109.46479 * 149.97696 * 28 27 23 51 51 H 1.09007 * 109.58577 * 293.81842 * 30 18 17 52 52 H 1.09000 * 109.58887 * 173.40189 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6111 -0.6618 3.5094 8 7 2.7363 -0.0054 4.6433 9 14 3.0553 -2.4744 3.4255 10 1 4.4881 -2.6165 3.0624 11 1 2.8152 -3.1046 4.7486 12 1 2.2158 -3.1428 2.3991 13 6 2.0400 -0.7212 -1.2491 14 1 1.6760 -1.7486 -1.2502 15 6 1.5336 0.0021 -2.4992 16 6 2.0160 -0.7374 -3.7492 17 6 3.5477 -0.7380 -3.7780 18 7 4.0443 -1.3004 -2.5148 19 6 4.9161 -2.3282 -2.5165 20 8 5.4001 -2.7164 -1.4711 21 6 5.2838 -2.9827 -3.7886 22 6 6.2727 -3.9788 -3.9680 23 6 6.2528 -4.2745 -5.2888 24 6 7.1234 -5.2837 -5.9922 25 6 7.5119 -6.5440 -5.2165 26 6 8.5557 -5.4577 -5.4834 27 7 5.3119 -3.4921 -5.8598 28 6 4.9728 -3.4940 -7.2850 29 7 4.7569 -2.7460 -4.9735 30 6 3.5719 -0.7216 -1.2497 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1527 35 1 3.0589 -0.4627 5.4355 36 1 0.4439 0.0253 -2.4888 37 1 1.9182 1.0219 -2.5095 38 1 1.6356 -0.2351 -4.6386 39 1 1.6522 -1.7647 -3.7278 40 1 3.9113 0.2833 -3.8912 41 1 3.8993 -1.3456 -4.6119 42 1 6.9079 -4.4133 -3.2104 43 1 6.9544 -5.3844 -7.0643 44 1 7.1382 -6.6430 -4.1974 45 1 7.5985 -7.4741 -5.7782 46 1 9.3291 -5.6731 -6.2207 47 1 8.8687 -4.8419 -4.6402 48 1 5.5951 -2.7674 -7.8075 49 1 5.1481 -4.4869 -7.6990 50 1 3.9228 -3.2288 -7.4089 51 1 3.9376 0.3011 -1.1567 52 1 3.9376 -1.3197 -0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667326987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:04 Heat of formation + Delta-G solvation = 71.361240 kcal Electronic energy + Delta-G solvation = -31255.903009 eV Core-core repulsion = 27257.869347 eV Total energy + Delta-G solvation = -3998.033662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.85538 -41.14918 -39.14242 -38.16315 -37.09637 -34.87182 -34.35296 -33.27792 -31.96086 -31.42234 -30.22119 -28.44142 -26.65149 -25.78541 -24.77228 -24.07020 -23.44503 -23.24874 -22.10945 -21.38158 -21.08846 -19.94110 -19.57895 -18.32771 -17.79711 -17.33309 -16.90866 -16.74156 -16.29155 -16.01882 -15.91635 -15.55339 -15.42750 -15.04825 -14.89530 -14.72373 -14.44415 -14.32468 -14.23853 -14.04344 -13.57832 -13.56879 -13.42094 -13.24393 -12.92483 -12.86279 -12.63133 -12.44686 -12.42200 -12.29629 -12.21050 -12.03918 -11.87086 -11.76986 -11.55614 -11.47296 -11.37900 -11.30042 -11.03846 -10.74409 -10.18871 -9.80352 -9.64281 -9.30704 -8.04325 -5.34505 0.38318 0.93097 1.30694 1.37956 1.39328 1.42391 1.96673 2.22823 2.44384 3.01618 3.11423 3.28488 3.43698 3.49250 3.67611 3.81016 3.91509 3.96056 4.03399 4.06103 4.13398 4.14969 4.30838 4.35960 4.40862 4.42054 4.50740 4.56646 4.62671 4.68483 4.73523 4.73809 4.80479 4.80933 4.89047 4.95591 4.99452 5.01877 5.04019 5.12319 5.17357 5.21805 5.25623 5.27398 5.35112 5.49220 5.53540 5.60761 5.77938 5.88649 6.21418 6.31295 6.79235 7.06417 7.07012 7.85163 8.01758 9.17617 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002936 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.265868 B = 9535.948329 C =11262.869988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.177 3.823 3 H 0.051 0.949 4 N -0.754 5.754 5 C -0.215 4.215 6 H 0.065 0.935 7 C -0.058 4.058 8 N -0.982 5.982 9 Si 0.939 3.061 10 H -0.292 1.292 11 H -0.290 1.290 12 H -0.262 1.262 13 C -0.092 4.092 14 H 0.058 0.942 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.069 3.931 18 N -0.594 5.594 19 C 0.586 3.414 20 O -0.584 6.584 21 C -0.032 4.032 22 C -0.205 4.205 23 C 0.063 3.937 24 C -0.100 4.100 25 C -0.163 4.163 26 C -0.160 4.160 27 N -0.272 5.272 28 C 0.069 3.931 29 N -0.256 5.256 30 C 0.124 3.876 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.358 0.642 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.082 0.918 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.124 0.876 50 H 0.109 0.891 51 H 0.068 0.932 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -10.089 -37.506 39.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.069 0.931 4 N -0.397 5.397 5 C -0.346 4.346 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.769 3.231 10 H -0.219 1.219 11 H -0.217 1.217 12 H -0.187 1.187 13 C -0.112 4.112 14 H 0.077 0.923 15 C -0.147 4.147 16 C -0.156 4.156 17 C -0.053 4.053 18 N -0.325 5.325 19 C 0.374 3.626 20 O -0.463 6.463 21 C -0.189 4.189 22 C -0.233 4.233 23 C -0.062 4.062 24 C -0.119 4.119 25 C -0.201 4.201 26 C -0.198 4.198 27 N -0.059 5.059 28 C -0.069 4.069 29 N -0.093 5.093 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.191 0.809 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.101 0.899 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.102 0.898 48 H 0.125 0.875 49 H 0.142 0.858 50 H 0.127 0.873 51 H 0.086 0.914 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.823 -9.427 -37.518 38.984 hybrid contribution 0.964 -1.281 1.911 2.494 sum 5.788 -10.708 -35.607 37.630 Atomic orbital electron populations 1.22294 0.96694 1.01106 1.01274 1.20452 0.93358 0.95145 0.84129 0.93134 1.42939 1.80002 1.09329 1.07447 1.19043 1.34012 0.94500 0.87056 0.91657 1.25271 1.02908 1.01219 0.95560 1.69831 1.55287 1.37186 1.01009 0.85640 0.78084 0.82629 0.76773 1.21903 1.21670 1.18685 1.21653 0.93299 1.00058 0.96190 0.92327 1.21638 1.01948 0.99198 0.91920 1.21816 0.93958 1.00969 0.98892 1.22944 0.95714 1.00520 0.86110 1.48091 1.43154 1.32392 1.08889 1.17562 0.78710 0.79524 0.86779 1.90783 1.55615 1.66048 1.33854 1.21539 1.02392 1.03360 0.91610 1.21467 1.03197 1.02042 0.96644 1.20767 0.95578 0.98001 0.91860 1.20530 0.95858 0.95799 0.99737 1.23163 1.02358 0.93323 1.01221 1.23161 0.91103 1.01848 1.03664 1.45962 1.24767 1.25296 1.09853 1.22727 1.05274 1.07076 0.71833 1.73016 1.21763 1.16857 0.97645 1.21500 0.95003 0.98210 0.85111 0.93701 0.94762 0.89802 0.80918 0.93461 0.89428 0.90754 0.87472 0.92586 0.91036 0.84122 0.83464 0.83071 0.89911 0.85601 0.85550 0.89777 0.87532 0.85819 0.87285 0.91379 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16 2 C 0.18 6.86 2.47 44.99 0.11 6.97 16 3 H 0.05 2.02 8.08 -2.38 -0.02 2.01 16 4 N -0.75 -37.68 4.32 -322.96 -1.40 -39.07 16 5 C -0.21 -12.81 10.41 84.03 0.87 -11.93 16 6 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 7 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 8 N -0.98 -65.92 13.97 21.65 0.30 -65.62 16 9 Si 0.94 50.90 27.74 68.60 1.90 52.80 16 10 H -0.29 -16.24 7.11 99.48 0.71 -15.53 16 11 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 12 H -0.26 -13.28 6.52 99.48 0.65 -12.63 16 13 C -0.09 -2.99 1.97 -10.72 -0.02 -3.01 16 14 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.11 -2.47 4.85 30.62 0.15 -2.32 16 16 C -0.12 -2.27 6.08 30.67 0.19 -2.09 16 17 C 0.07 1.60 6.33 86.37 0.55 2.14 16 18 N -0.59 -19.48 2.97 -822.45 -2.44 -21.92 16 19 C 0.59 21.94 7.69 86.75 0.67 22.61 16 20 O -0.58 -27.25 16.37 -3.93 -0.06 -27.32 16 21 C -0.03 -0.95 6.88 42.46 0.29 -0.66 16 22 C -0.21 -5.35 9.86 22.41 0.22 -5.13 16 23 C 0.06 1.10 6.60 41.40 0.27 1.38 16 24 C -0.10 -0.93 5.94 -11.54 -0.07 -1.00 16 25 C -0.16 -1.57 10.05 30.59 0.31 -1.26 16 26 C -0.16 -1.49 10.05 30.59 0.31 -1.18 16 27 N -0.27 -4.23 3.70 -355.92 -1.32 -5.55 16 28 C 0.07 0.24 11.05 127.77 1.41 1.65 16 29 N -0.26 -5.76 8.37 -48.17 -0.40 -6.17 16 30 C 0.12 4.62 5.45 86.36 0.47 5.09 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 2.16 6.41 -2.38 -0.02 2.14 16 34 H 0.36 18.26 5.47 -92.71 -0.51 17.76 16 35 H 0.26 16.50 8.31 -92.71 -0.77 15.72 16 36 H 0.09 1.72 6.37 -2.38 -0.02 1.70 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.14 3.08 3.74 -78.11 -0.29 2.78 16 42 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 43 H 0.15 0.34 7.16 -2.38 -0.02 0.32 16 44 H 0.08 1.16 7.95 -2.39 -0.02 1.14 16 45 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.08 1.12 7.97 -2.38 -0.02 1.10 16 48 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 49 H 0.12 -0.25 7.12 -2.39 -0.02 -0.27 16 50 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 51 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 52 H 0.05 2.54 6.55 -2.39 -0.02 2.53 16 Total: -1.00 -86.53 407.45 3.51 -83.02 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.07 Total: 26.33 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.85 Total: 3.50 kcal Atomic # 7 Polarization: -133.07 SS G_CDS: -5.26 Total: -138.33 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.90 Total: 52.80 kcal Total: -86.53 3.51 -83.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667326987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.377 kcal (2) G-P(sol) polarization free energy of solvation -86.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds