Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46972 * 2 1 4 4 N 1.46500 * 109.46909 * 120.00121 * 2 1 3 5 5 C 1.36937 * 119.99965 * 274.99639 * 4 2 1 6 6 H 1.08003 * 120.00057 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99862 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47172 * 90.00385 * 9 7 5 11 11 H 1.48506 * 109.47097 * 210.00103 * 9 7 5 12 12 H 1.48500 * 109.47442 * 330.00067 * 9 7 5 13 13 C 1.53004 * 109.46622 * 239.99829 * 2 1 3 14 14 H 1.09001 * 109.52148 * 185.07947 * 13 2 1 15 15 C 1.53041 * 109.49665 * 65.00400 * 13 2 1 16 16 C 1.53038 * 109.52813 * 178.68658 * 15 13 2 17 17 C 1.53169 * 109.32735 * 61.36819 * 16 15 13 18 18 N 1.46929 * 108.76893 * 305.35961 * 17 16 15 19 19 C 1.34771 * 120.62821 * 233.62940 * 18 17 16 20 20 O 1.21574 * 119.99937 * 173.00684 * 19 18 17 21 21 C 1.47714 * 120.00333 * 353.00420 * 19 18 17 22 22 C 1.41498 * 126.51772 * 172.92115 * 21 19 18 23 23 C 1.35370 * 105.50010 * 179.90549 * 22 21 19 24 24 C 1.50707 * 126.38343 * 180.08992 * 23 22 21 25 25 C 1.53000 * 117.49989 * 34.06518 * 24 23 22 26 26 C 1.52993 * 117.49738 * 325.40561 * 24 23 22 27 27 N 1.35033 * 107.22781 * 0.35968 * 23 22 21 28 28 C 1.46502 * 124.88135 * 179.76706 * 27 23 22 29 29 N 1.28465 * 110.23045 * 359.75969 * 27 23 22 30 30 C 1.46921 * 118.73741 * 53.60625 * 18 17 16 31 31 H 1.09003 * 109.47208 * 59.99767 * 1 2 3 32 32 H 1.08993 * 109.47680 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47057 * 300.00197 * 1 2 3 34 34 H 0.96996 * 119.99582 * 95.00066 * 4 2 1 35 35 H 0.96999 * 119.99779 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46138 * 298.69738 * 15 13 2 37 37 H 1.09003 * 109.46136 * 58.67247 * 15 13 2 38 38 H 1.08992 * 109.50187 * 181.30988 * 16 15 13 39 39 H 1.09004 * 109.49640 * 301.41095 * 16 15 13 40 40 H 1.08999 * 109.59026 * 185.57089 * 17 16 15 41 41 H 1.09003 * 109.58753 * 65.13978 * 17 16 15 42 42 H 1.08004 * 127.25195 * 0.02562 * 22 21 19 43 43 H 1.09002 * 115.54676 * 179.73773 * 24 23 22 44 44 H 1.09004 * 117.49740 * 359.97438 * 25 24 23 45 45 H 1.09001 * 117.49682 * 145.02008 * 25 24 23 46 46 H 1.09008 * 117.50031 * 214.97838 * 26 24 23 47 47 H 1.09003 * 117.50430 * 359.97438 * 26 24 23 48 48 H 1.08998 * 109.46596 * 269.97209 * 28 27 23 49 49 H 1.08998 * 109.47159 * 29.97400 * 28 27 23 50 50 H 1.09002 * 109.46715 * 149.97484 * 28 27 23 51 51 H 1.09008 * 109.58480 * 186.60805 * 30 18 17 52 52 H 1.08993 * 109.58995 * 66.18288 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6122 -0.6618 3.5090 8 7 2.7375 -0.0053 4.6429 9 14 3.0564 -2.4743 3.4251 10 1 4.4889 -2.6165 3.0607 11 1 2.8173 -3.1043 4.7484 12 1 2.2160 -3.1430 2.3995 13 6 2.0399 -0.7213 -1.2493 14 1 3.1261 -0.8013 -1.2059 15 6 1.6353 0.0686 -2.4961 16 6 2.1731 -0.6349 -3.7442 17 6 1.5610 -2.0357 -3.8399 18 7 1.8217 -2.7524 -2.5840 19 6 2.4128 -3.9635 -2.5946 20 8 2.7385 -4.4900 -1.5483 21 6 2.6649 -4.6512 -3.8773 22 6 3.3946 -5.8495 -4.0610 23 6 3.3583 -6.0948 -5.3918 24 6 3.9911 -7.2631 -6.1031 25 6 4.0342 -8.6016 -5.3632 26 6 5.3181 -7.7901 -5.5536 27 7 2.6545 -5.0944 -5.9638 28 6 2.3824 -4.9752 -7.3984 29 7 2.2578 -4.2623 -5.0690 30 6 1.4262 -2.1233 -1.3166 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2489 -1.6318 1.1525 35 1 3.0615 -0.4625 5.4347 36 1 0.5484 0.1270 -2.5521 37 1 2.0506 1.0748 -2.4391 38 1 1.9047 -0.0597 -4.6302 39 1 3.2580 -0.7158 -3.6773 40 1 2.0145 -2.5768 -4.6704 41 1 0.4855 -1.9546 -3.9978 42 1 3.8772 -6.4444 -3.2996 43 1 3.8476 -7.2895 -7.1833 44 1 3.6052 -8.6371 -4.3617 45 1 3.9194 -9.5086 -5.9567 46 1 6.0476 -8.1638 -6.2722 47 1 5.7337 -7.2917 -4.6778 48 1 3.1803 -4.4044 -7.8732 49 1 2.3327 -5.9693 -7.8426 50 1 1.4316 -4.4631 -7.5464 51 1 1.7909 -2.7222 -0.4820 52 1 0.3398 -2.0494 -1.2687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667326988.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = 71.617532 kcal Electronic energy + Delta-G solvation = -31256.449638 eV Core-core repulsion = 27258.427089 eV Total energy + Delta-G solvation = -3998.022549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.84691 -41.22222 -39.20948 -38.15904 -37.07887 -34.89058 -34.33389 -33.34411 -32.00399 -31.44838 -29.78255 -28.49666 -26.61095 -26.16599 -24.76318 -24.30760 -23.54251 -23.25537 -22.22467 -21.34014 -20.69003 -19.83746 -19.58346 -18.29198 -17.79229 -17.36572 -17.06049 -16.66156 -16.17308 -16.03634 -15.98042 -15.69183 -15.42096 -15.09427 -14.94128 -14.73714 -14.51626 -14.40301 -14.16548 -14.04119 -13.62491 -13.58019 -13.41005 -13.11939 -12.98826 -12.85111 -12.71972 -12.56372 -12.42822 -12.22221 -12.04916 -11.95532 -11.89830 -11.84173 -11.59498 -11.47702 -11.38156 -11.31063 -11.02755 -10.86867 -10.18492 -9.78304 -9.62300 -9.33071 -8.05730 -5.35999 0.39236 0.92843 1.31645 1.34630 1.41054 1.43587 1.94596 2.22467 2.42904 3.01190 3.11339 3.26535 3.43750 3.50431 3.65326 3.83502 3.88267 3.94111 4.00612 4.05530 4.11239 4.14312 4.30356 4.34515 4.37562 4.40739 4.49948 4.57873 4.59201 4.66645 4.68370 4.70461 4.78874 4.80496 4.86260 4.93710 5.01333 5.04276 5.06257 5.10503 5.16979 5.19959 5.24934 5.25150 5.33291 5.43381 5.53383 5.64907 5.76761 5.85080 6.20279 6.29361 6.77542 7.05299 7.05757 7.84264 8.00768 9.16144 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002863 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.647737 B = 9776.159607 C =11475.552791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.053 0.947 4 N -0.757 5.757 5 C -0.218 4.218 6 H 0.066 0.934 7 C -0.057 4.057 8 N -0.981 5.981 9 Si 0.938 3.062 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.268 1.268 13 C -0.095 4.095 14 H 0.050 0.950 15 C -0.107 4.107 16 C -0.125 4.125 17 C 0.085 3.915 18 N -0.595 5.595 19 C 0.587 3.413 20 O -0.584 6.584 21 C -0.034 4.034 22 C -0.206 4.206 23 C 0.062 3.938 24 C -0.100 4.100 25 C -0.162 4.162 26 C -0.162 4.162 27 N -0.272 5.272 28 C 0.070 3.930 29 N -0.255 5.255 30 C 0.118 3.882 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.124 0.876 50 H 0.109 0.891 51 H 0.051 0.949 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -13.762 -37.647 40.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.071 0.929 4 N -0.400 5.400 5 C -0.349 4.349 6 H 0.084 0.916 7 C -0.249 4.249 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.193 1.193 13 C -0.115 4.115 14 H 0.068 0.932 15 C -0.145 4.145 16 C -0.163 4.163 17 C -0.037 4.037 18 N -0.326 5.326 19 C 0.375 3.625 20 O -0.463 6.463 21 C -0.191 4.191 22 C -0.234 4.234 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.199 4.199 26 C -0.199 4.199 27 N -0.060 5.060 28 C -0.068 4.068 29 N -0.092 5.092 30 C -0.005 4.005 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.102 0.898 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.142 0.858 50 H 0.127 0.873 51 H 0.070 0.930 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.626 -12.971 -37.655 39.860 hybrid contribution 0.913 -1.458 1.863 2.536 sum -0.713 -14.429 -35.792 38.598 Atomic orbital electron populations 1.22389 0.96856 1.01256 1.01379 1.20449 0.93438 0.95091 0.84085 0.92934 1.43012 1.80056 1.09441 1.07518 1.19083 1.34129 0.94572 0.87138 0.91557 1.25267 1.02905 1.01143 0.95553 1.69835 1.55172 1.37175 1.01008 0.85663 0.78337 0.82491 0.76749 1.21256 1.21603 1.19328 1.21662 0.99350 0.94332 0.96202 0.93158 1.21601 1.02389 0.98709 0.91826 1.21903 0.99959 0.95318 0.99161 1.22681 1.02173 0.93294 0.85526 1.48086 1.58289 1.17074 1.09123 1.17536 0.76983 0.81115 0.86853 1.90778 1.53945 1.67526 1.34046 1.21528 1.07068 0.99049 0.91437 1.21469 1.06777 0.98764 0.96394 1.20767 0.99886 0.93948 0.91717 1.20529 1.01647 0.90155 0.99591 1.23175 1.00954 0.94075 1.01718 1.23169 0.90680 1.02647 1.03448 1.45926 1.35733 1.14984 1.09319 1.22714 1.05614 1.07120 0.71389 1.73282 1.21605 1.17144 0.97205 1.21718 1.00066 0.93494 0.85185 0.89763 0.93250 0.94744 0.80795 0.93387 0.89538 0.90527 0.87305 0.93208 0.85444 0.89962 0.83506 0.83114 0.89820 0.85575 0.85617 0.89856 0.87646 0.85818 0.87272 0.92993 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.76 71.98 0.63 -4.79 16 2 C 0.18 6.93 2.67 44.99 0.12 7.05 16 3 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 4 N -0.76 -38.28 4.86 -322.94 -1.57 -39.85 16 5 C -0.22 -13.07 10.41 84.03 0.87 -12.19 16 6 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 7 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 8 N -0.98 -65.68 13.97 21.65 0.30 -65.38 16 9 Si 0.94 51.12 27.73 68.60 1.90 53.02 16 10 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 11 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 12 H -0.27 -14.15 6.52 99.48 0.65 -13.51 16 13 C -0.10 -3.14 2.27 -10.72 -0.02 -3.16 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.11 -2.45 4.89 30.62 0.15 -2.30 16 16 C -0.13 -2.44 6.08 30.66 0.19 -2.25 16 17 C 0.08 1.86 6.11 86.35 0.53 2.39 16 18 N -0.59 -18.55 2.97 -822.51 -2.44 -21.00 16 19 C 0.59 21.23 7.69 86.75 0.67 21.90 16 20 O -0.58 -26.37 16.36 -3.95 -0.06 -26.43 16 21 C -0.03 -0.98 6.83 42.46 0.29 -0.69 16 22 C -0.21 -5.27 9.86 22.41 0.22 -5.04 16 23 C 0.06 1.06 6.60 41.41 0.27 1.34 16 24 C -0.10 -0.91 5.94 -11.54 -0.07 -0.98 16 25 C -0.16 -1.50 10.05 30.62 0.31 -1.19 16 26 C -0.16 -1.51 10.05 30.62 0.31 -1.20 16 27 N -0.27 -4.15 3.70 -355.91 -1.32 -5.47 16 28 C 0.07 0.23 11.05 127.77 1.41 1.64 16 29 N -0.26 -5.61 8.46 -48.18 -0.41 -6.01 16 30 C 0.12 4.07 5.19 86.36 0.45 4.52 16 31 H 0.08 2.16 6.60 -2.39 -0.02 2.14 16 32 H 0.05 1.66 6.23 -2.39 -0.01 1.65 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.36 18.61 4.34 -92.71 -0.40 18.21 16 35 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 36 H 0.09 1.69 6.63 -2.39 -0.02 1.67 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.13 2.70 4.17 -25.42 -0.11 2.59 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.15 0.32 7.17 -2.39 -0.02 0.30 16 44 H 0.08 1.12 7.95 -2.38 -0.02 1.10 16 45 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.08 1.13 7.96 -2.39 -0.02 1.11 16 48 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.12 -0.28 7.12 -2.39 -0.02 -0.30 16 50 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 51 H 0.05 2.24 5.82 -2.38 -0.01 2.23 16 52 H 0.09 2.79 6.06 -2.39 -0.01 2.77 16 Total: -1.00 -86.44 402.71 3.57 -82.87 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.38 Total: 26.33 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 6.79 Total: 1.91 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -5.44 Total: -137.70 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.43 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 1.90 Total: 53.02 kcal Total: -86.44 3.57 -82.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667326988.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.491 kcal (2) G-P(sol) polarization free energy of solvation -86.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds