Wall clock time and date at job start Wed Apr 1 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46474 * 2 1 4 4 N 1.46504 * 109.47050 * 119.99431 * 2 1 3 5 5 C 1.36938 * 119.99759 * 275.00255 * 4 2 1 6 6 H 1.07998 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99469 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00399 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47217 * 89.99917 * 9 7 5 11 11 H 1.48504 * 109.47154 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.47070 * 330.00280 * 9 7 5 13 13 C 1.52991 * 109.47105 * 239.99604 * 2 1 3 14 14 H 1.09002 * 109.52790 * 299.91742 * 13 2 1 15 15 C 1.53040 * 109.50210 * 59.99995 * 13 2 1 16 16 C 1.53035 * 109.52926 * 181.31118 * 15 13 2 17 17 C 1.53192 * 109.31324 * 298.63708 * 16 15 13 18 18 N 1.46930 * 108.77191 * 54.63662 * 17 16 15 19 19 C 1.34773 * 120.63005 * 126.37435 * 18 17 16 20 20 O 1.21574 * 120.00188 * 174.99073 * 19 18 17 21 21 C 1.47714 * 119.99832 * 354.98308 * 19 18 17 22 22 N 1.32199 * 126.67747 * 5.45334 * 21 19 18 23 23 N 1.28854 * 110.15019 * 179.83844 * 22 21 19 24 24 H 0.96993 * 124.97663 * 180.02562 * 23 22 21 25 25 C 1.34309 * 110.03986 * 0.36723 * 23 22 21 26 26 C 1.35585 * 107.21644 * 359.84984 * 25 23 22 27 27 C 1.50379 * 124.62000 * 179.78823 * 26 25 23 28 28 C 1.53476 * 108.28291 * 343.75323 * 27 26 25 29 29 C 1.53104 * 109.51309 * 49.48511 * 28 27 26 30 30 C 1.50714 * 128.90499 * 179.88377 * 25 23 22 31 31 C 1.46928 * 118.74048 * 306.38891 * 18 17 16 32 32 H 1.09004 * 109.47016 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47367 * 300.00027 * 1 2 3 34 34 H 1.09001 * 109.47150 * 60.00543 * 1 2 3 35 35 H 0.96995 * 119.99786 * 95.00310 * 4 2 1 36 36 H 0.96999 * 119.99793 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.45921 * 61.29145 * 15 13 2 38 38 H 1.09000 * 109.45657 * 301.32139 * 15 13 2 39 39 H 1.08997 * 109.50217 * 58.58818 * 16 15 13 40 40 H 1.09004 * 109.49611 * 178.69451 * 16 15 13 41 41 H 1.08990 * 109.59288 * 174.42472 * 17 16 15 42 42 H 1.09004 * 109.58716 * 294.85511 * 17 16 15 43 43 H 1.09001 * 109.70044 * 103.45301 * 27 26 25 44 44 H 1.08997 * 109.70420 * 224.05801 * 27 26 25 45 45 H 1.09008 * 109.46249 * 289.46652 * 28 27 26 46 46 H 1.09001 * 109.45472 * 169.49769 * 28 27 26 47 47 H 1.09006 * 109.43868 * 169.89536 * 29 28 27 48 48 H 1.09000 * 109.43985 * 50.00171 * 29 28 27 49 49 H 1.08998 * 109.68913 * 283.02499 * 30 25 23 50 50 H 1.08996 * 109.68762 * 43.56609 * 30 25 23 51 51 H 1.08999 * 109.58582 * 173.39576 * 31 18 17 52 52 H 1.08996 * 109.58918 * 293.82536 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6113 -0.6617 3.5094 8 7 2.9244 -1.9387 3.4504 9 14 2.7903 0.2705 5.1182 10 1 1.5225 0.1805 5.8862 11 1 3.8945 -0.3233 5.9142 12 1 3.0962 1.6955 4.8333 13 6 2.0400 -0.7213 -1.2491 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4992 16 6 2.0129 -0.7403 -3.7489 17 6 3.5445 -0.7373 -3.7796 18 7 4.0439 -1.2972 -2.5163 19 6 4.9182 -2.3229 -2.5178 20 8 5.3939 -2.7177 -1.4710 21 6 5.2984 -2.9673 -3.7914 22 7 4.9441 -2.5852 -5.0064 23 7 5.4575 -3.3733 -5.8870 24 1 5.3363 -3.2901 -6.8457 25 6 6.1790 -4.3313 -5.2824 26 6 6.1019 -4.1093 -3.9471 27 6 6.7673 -4.9589 -2.8998 28 6 7.1724 -6.2906 -3.5463 29 6 7.9254 -6.0175 -4.8511 30 6 6.9532 -5.4663 -5.9020 31 6 3.5717 -0.7180 -1.2512 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 2.2491 -1.6316 1.1528 36 1 3.2477 -2.3959 4.2425 37 1 1.9125 1.0202 -2.5111 38 1 0.4405 0.0199 -2.4875 39 1 1.6516 -1.7684 -3.7254 40 1 1.6303 -0.2398 -4.6384 41 1 3.8946 -1.3464 -4.6129 42 1 3.9057 0.2848 -3.8943 43 1 7.6536 -4.4492 -2.5219 44 1 6.0723 -5.1444 -2.0810 45 1 6.2790 -6.8780 -3.7585 46 1 7.8173 -6.8442 -2.8638 47 1 8.3667 -6.9450 -5.2162 48 1 8.7145 -5.2880 -4.6688 49 1 6.2657 -6.2523 -6.2144 50 1 7.5114 -5.1023 -6.7645 51 1 3.9396 -1.3145 -0.4164 52 1 3.9351 0.3056 -1.1598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667332729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:36 Heat of formation + Delta-G solvation = 43.081572 kcal Electronic energy + Delta-G solvation = -31547.154190 eV Core-core repulsion = 27547.894229 eV Total energy + Delta-G solvation = -3999.259961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.03302 -39.70702 -37.57370 -37.13966 -35.28654 -33.06190 -32.59132 -31.61084 -30.25805 -30.09473 -29.35153 -28.08210 -25.59834 -24.33509 -24.00299 -23.09577 -22.70905 -22.22609 -20.77160 -19.45909 -19.26110 -18.77926 -17.96742 -17.08713 -16.56029 -16.14421 -15.51671 -14.93865 -14.76974 -14.65049 -14.40297 -14.14472 -14.01244 -13.81151 -13.64300 -13.41753 -13.29939 -13.10991 -12.89185 -12.68478 -12.53650 -12.31272 -12.22196 -11.94121 -11.41802 -11.17449 -11.10929 -11.00974 -10.91152 -10.82566 -10.78556 -10.62643 -10.60555 -10.17010 -10.09220 -9.98161 -9.80626 -9.53014 -9.45532 -9.39543 -8.80719 -8.78348 -8.23920 -6.83185 -5.63329 -2.92267 1.49258 1.98226 2.57047 3.27813 3.51434 3.56186 3.57722 3.58389 4.19729 4.33345 4.51792 4.59481 4.68167 4.92888 4.96108 5.05087 5.11741 5.15790 5.18607 5.25490 5.32114 5.34122 5.41440 5.58190 5.63256 5.66814 5.69208 5.79361 5.85670 5.91041 5.94528 5.96281 5.99830 6.10529 6.14189 6.16597 6.18514 6.28579 6.32433 6.34642 6.47350 6.53650 6.59882 6.65892 6.79079 6.83931 7.00135 7.03407 7.20046 7.63325 7.81082 7.82437 8.47399 8.54313 9.65341 10.23778 10.58441 11.58939 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002920 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.854024 B = 9586.332453 C =11373.027389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.073 3.927 18 N -0.597 5.597 19 C 0.593 3.407 20 O -0.519 6.519 21 C 0.012 3.988 22 N -0.267 5.267 23 N -0.381 5.381 24 H 0.442 0.558 25 C 0.011 3.989 26 C -0.141 4.141 27 C -0.045 4.045 28 C -0.121 4.121 29 C -0.115 4.115 30 C -0.047 4.047 31 C 0.124 3.876 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.134 0.866 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.323 -5.832 -26.305 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.365 5.365 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.051 4.051 18 N -0.329 5.329 19 C 0.378 3.622 20 O -0.393 6.393 21 C -0.148 4.148 22 N -0.102 5.102 23 N -0.092 5.092 24 H 0.285 0.715 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.159 4.159 29 C -0.153 4.153 30 C -0.085 4.085 31 C 0.002 3.998 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.125 0.875 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.011 -5.109 -26.089 27.255 hybrid contribution 0.237 -0.130 0.701 0.751 sum 6.248 -5.239 -25.388 26.665 Atomic orbital electron populations 1.22478 0.99383 1.00752 0.99806 1.20174 0.91764 0.95263 0.85832 0.93546 1.42453 1.78055 1.10764 1.05264 1.19191 1.36530 0.93753 0.87338 0.91341 1.24727 1.02308 0.95942 0.97921 1.69669 1.50750 1.08597 1.28688 0.86248 0.77173 0.78812 0.84291 1.21933 1.21856 1.20871 1.21745 0.94734 1.00420 0.95284 0.91294 1.21644 1.00794 0.99053 0.93845 1.21871 0.95565 1.01047 0.98286 1.22668 0.94314 1.00126 0.87964 1.48007 1.43557 1.33057 1.08304 1.17019 0.79474 0.79580 0.86136 1.90853 1.53695 1.63409 1.31319 1.21780 1.02927 0.98489 0.91572 1.73420 1.20435 1.17850 0.98536 1.43176 1.36290 1.20153 1.09575 0.71458 1.21144 1.01539 0.95938 0.93041 1.19900 1.03223 0.98177 0.93776 1.20010 1.00162 0.92830 0.95310 1.21675 1.00367 0.97434 0.96418 1.21567 0.97640 1.01140 0.94922 1.20230 0.96867 0.93272 0.98175 1.21722 0.93786 0.98987 0.85283 0.93655 0.92942 0.94309 0.78180 0.93587 0.92010 0.91456 0.92000 0.91410 0.84929 0.92231 0.90403 0.89533 0.91711 0.91052 0.90953 0.91275 0.89945 0.90402 0.87506 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.14 37.16 0.34 -2.70 16 2 C 0.18 3.65 2.47 -67.93 -0.17 3.48 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -18.56 4.52 -53.43 -0.24 -18.81 16 5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 9 Si 0.90 23.11 29.55 -169.99 -5.02 18.08 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.78 1.97 -90.52 -0.18 -1.95 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.12 -1.58 4.85 -26.69 -0.13 -1.71 16 16 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 17 C 0.07 0.96 6.33 -3.71 -0.02 0.94 16 18 N -0.60 -9.96 2.97 -173.94 -0.52 -10.48 16 19 C 0.59 10.74 7.70 -12.39 -0.10 10.64 16 20 O -0.52 -11.25 15.33 5.30 0.08 -11.16 16 21 C 0.01 0.17 6.89 -82.99 -0.57 -0.40 16 22 N -0.27 -3.20 8.60 33.28 0.29 -2.91 16 23 N -0.38 -3.26 6.82 33.42 0.23 -3.03 16 24 H 0.44 1.95 8.96 -190.21 -1.70 0.24 16 25 C 0.01 0.10 7.12 -82.45 -0.59 -0.49 16 26 C -0.14 -1.81 5.99 -104.88 -0.63 -2.44 16 27 C -0.05 -0.55 5.51 -27.79 -0.15 -0.70 16 28 C -0.12 -1.03 5.91 -26.43 -0.16 -1.18 16 29 C -0.11 -0.73 5.89 -26.47 -0.16 -0.89 16 30 C -0.05 -0.27 6.31 -27.67 -0.17 -0.44 16 31 C 0.12 2.32 5.46 -3.72 -0.02 2.30 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 35 H 0.38 10.70 7.62 -40.82 -0.31 10.39 16 36 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.13 1.66 3.70 -117.12 -0.43 1.22 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.25 7.79 -51.93 -0.40 0.84 16 45 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.11 2.46 6.55 -51.93 -0.34 2.12 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -34.69 398.91 -11.72 -46.41 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -10.16 Total: 8.84 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.11 Total: -4.60 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.48 Total: -63.58 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.69 -11.72 -46.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.494 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds