Wall clock time and date at job start Wed Apr 1 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46474 * 2 1 4 4 N 1.46504 * 109.47050 * 119.99431 * 2 1 3 5 5 C 1.36938 * 119.99759 * 275.00255 * 4 2 1 6 6 H 1.07998 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99469 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00399 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47217 * 89.99917 * 9 7 5 11 11 H 1.48504 * 109.47154 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.47070 * 330.00280 * 9 7 5 13 13 C 1.52991 * 109.47105 * 239.99604 * 2 1 3 14 14 H 1.09002 * 109.52790 * 299.91742 * 13 2 1 15 15 C 1.53040 * 109.50210 * 59.99995 * 13 2 1 16 16 C 1.53035 * 109.52926 * 181.31118 * 15 13 2 17 17 C 1.53192 * 109.31324 * 298.63708 * 16 15 13 18 18 N 1.46930 * 108.77191 * 54.63662 * 17 16 15 19 19 C 1.34773 * 120.63005 * 126.37435 * 18 17 16 20 20 O 1.21574 * 120.00188 * 174.99073 * 19 18 17 21 21 C 1.47714 * 119.99832 * 354.98308 * 19 18 17 22 22 N 1.32199 * 126.67747 * 5.45334 * 21 19 18 23 23 N 1.28854 * 110.15019 * 179.83844 * 22 21 19 24 24 H 0.96993 * 124.97663 * 180.02562 * 23 22 21 25 25 C 1.34309 * 110.03986 * 0.36723 * 23 22 21 26 26 C 1.35585 * 107.21644 * 359.84984 * 25 23 22 27 27 C 1.50379 * 124.62000 * 179.78823 * 26 25 23 28 28 C 1.53476 * 108.28291 * 343.75323 * 27 26 25 29 29 C 1.53104 * 109.51309 * 49.48511 * 28 27 26 30 30 C 1.50714 * 128.90499 * 179.88377 * 25 23 22 31 31 C 1.46928 * 118.74048 * 306.38891 * 18 17 16 32 32 H 1.09004 * 109.47016 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47367 * 300.00027 * 1 2 3 34 34 H 1.09001 * 109.47150 * 60.00543 * 1 2 3 35 35 H 0.96995 * 119.99786 * 95.00310 * 4 2 1 36 36 H 0.96999 * 119.99793 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.45921 * 61.29145 * 15 13 2 38 38 H 1.09000 * 109.45657 * 301.32139 * 15 13 2 39 39 H 1.08997 * 109.50217 * 58.58818 * 16 15 13 40 40 H 1.09004 * 109.49611 * 178.69451 * 16 15 13 41 41 H 1.08990 * 109.59288 * 174.42472 * 17 16 15 42 42 H 1.09004 * 109.58716 * 294.85511 * 17 16 15 43 43 H 1.09001 * 109.70044 * 103.45301 * 27 26 25 44 44 H 1.08997 * 109.70420 * 224.05801 * 27 26 25 45 45 H 1.09008 * 109.46249 * 289.46652 * 28 27 26 46 46 H 1.09001 * 109.45472 * 169.49769 * 28 27 26 47 47 H 1.09006 * 109.43868 * 169.89536 * 29 28 27 48 48 H 1.09000 * 109.43985 * 50.00171 * 29 28 27 49 49 H 1.08998 * 109.68913 * 283.02499 * 30 25 23 50 50 H 1.08996 * 109.68762 * 43.56609 * 30 25 23 51 51 H 1.08999 * 109.58582 * 173.39576 * 31 18 17 52 52 H 1.08996 * 109.58918 * 293.82536 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6113 -0.6617 3.5094 8 7 2.9244 -1.9387 3.4504 9 14 2.7903 0.2705 5.1182 10 1 1.5225 0.1805 5.8862 11 1 3.8945 -0.3233 5.9142 12 1 3.0962 1.6955 4.8333 13 6 2.0400 -0.7213 -1.2491 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4992 16 6 2.0129 -0.7403 -3.7489 17 6 3.5445 -0.7373 -3.7796 18 7 4.0439 -1.2972 -2.5163 19 6 4.9182 -2.3229 -2.5178 20 8 5.3939 -2.7177 -1.4710 21 6 5.2984 -2.9673 -3.7914 22 7 4.9441 -2.5852 -5.0064 23 7 5.4575 -3.3733 -5.8870 24 1 5.3363 -3.2901 -6.8457 25 6 6.1790 -4.3313 -5.2824 26 6 6.1019 -4.1093 -3.9471 27 6 6.7673 -4.9589 -2.8998 28 6 7.1724 -6.2906 -3.5463 29 6 7.9254 -6.0175 -4.8511 30 6 6.9532 -5.4663 -5.9020 31 6 3.5717 -0.7180 -1.2512 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 2.2491 -1.6316 1.1528 36 1 3.2477 -2.3959 4.2425 37 1 1.9125 1.0202 -2.5111 38 1 0.4405 0.0199 -2.4875 39 1 1.6516 -1.7684 -3.7254 40 1 1.6303 -0.2398 -4.6384 41 1 3.8946 -1.3464 -4.6129 42 1 3.9057 0.2848 -3.8943 43 1 7.6536 -4.4492 -2.5219 44 1 6.0723 -5.1444 -2.0810 45 1 6.2790 -6.8780 -3.7585 46 1 7.8173 -6.8442 -2.8638 47 1 8.3667 -6.9450 -5.2162 48 1 8.7145 -5.2880 -4.6688 49 1 6.2657 -6.2523 -6.2144 50 1 7.5114 -5.1023 -6.7645 51 1 3.9396 -1.3145 -0.4164 52 1 3.9351 0.3056 -1.1598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667332729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:35 Heat of formation + Delta-G solvation = 20.156536 kcal Electronic energy + Delta-G solvation = -31548.148294 eV Core-core repulsion = 27547.894229 eV Total energy + Delta-G solvation = -4000.254065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.93430 -41.06995 -39.04727 -37.87179 -36.91993 -34.70401 -33.69136 -33.11406 -31.54741 -30.95852 -30.57528 -29.69130 -26.89746 -26.09199 -24.80913 -24.61772 -23.85049 -23.04534 -22.14123 -21.03104 -20.10129 -19.90437 -19.13258 -18.88004 -17.75119 -17.11885 -16.92711 -16.70234 -16.08050 -15.70618 -15.58995 -15.46088 -15.31121 -15.05001 -14.73945 -14.65113 -14.29625 -14.18189 -14.14007 -13.99944 -13.90904 -13.78924 -13.37332 -13.00958 -12.99352 -12.79955 -12.59789 -12.38957 -12.23462 -12.15131 -11.94242 -11.74455 -11.71936 -11.70708 -11.61135 -11.48032 -11.22544 -11.18777 -10.96058 -10.68609 -10.39591 -9.69162 -9.57309 -8.98035 -7.90334 -5.19140 0.42537 1.06374 1.44672 1.47626 1.55673 1.71958 2.11419 2.28764 2.57148 3.21814 3.42638 3.63132 3.67577 3.80540 3.87822 3.98506 4.02985 4.09851 4.16223 4.20656 4.27292 4.34508 4.34935 4.48104 4.56958 4.59890 4.65132 4.69960 4.76347 4.79892 4.86707 4.92099 4.96707 5.01877 5.03022 5.06793 5.07555 5.14474 5.15485 5.25355 5.27318 5.30880 5.36327 5.47502 5.48380 5.49094 5.55561 5.60614 5.67013 6.12839 6.30349 6.40062 6.84617 7.12944 7.35359 8.12946 8.35386 9.33320 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002920 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.854024 B = 9586.332453 C =11373.027389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.737 5.737 5 C -0.232 4.232 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.268 1.268 13 C -0.088 4.088 14 H 0.048 0.952 15 C -0.108 4.108 16 C -0.121 4.121 17 C 0.068 3.932 18 N -0.596 5.596 19 C 0.581 3.419 20 O -0.575 6.575 21 C -0.022 4.022 22 N -0.263 5.263 23 N -0.354 5.354 24 H 0.464 0.536 25 C 0.038 3.962 26 C -0.176 4.176 27 C -0.046 4.046 28 C -0.116 4.116 29 C -0.112 4.112 30 C -0.044 4.044 31 C 0.131 3.869 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.367 0.633 36 H 0.248 0.752 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.112 0.888 51 H 0.052 0.948 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -5.044 -30.921 31.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.364 4.364 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.227 1.227 12 H -0.192 1.192 13 C -0.108 4.108 14 H 0.067 0.933 15 C -0.146 4.146 16 C -0.160 4.160 17 C -0.054 4.054 18 N -0.327 5.327 19 C 0.369 3.631 20 O -0.453 6.453 21 C -0.179 4.179 22 N -0.100 5.100 23 N -0.068 5.068 24 H 0.313 0.687 25 C -0.091 4.091 26 C -0.186 4.186 27 C -0.084 4.084 28 C -0.154 4.154 29 C -0.150 4.150 30 C -0.082 4.082 31 C 0.008 3.992 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.199 0.801 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.124 0.876 50 H 0.130 0.870 51 H 0.071 0.929 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.446 -4.248 -30.797 31.562 hybrid contribution 0.414 -0.363 2.003 2.077 sum 5.860 -4.611 -28.795 29.744 Atomic orbital electron populations 1.22313 0.97241 1.00590 1.01090 1.20463 0.93110 0.94946 0.84990 0.93420 1.42689 1.78399 1.10141 1.06489 1.19613 1.34475 0.94122 0.88193 0.90435 1.25586 1.03292 0.96863 1.01611 1.69863 1.52840 1.10447 1.29157 0.85162 0.76769 0.78076 0.79925 1.21349 1.22683 1.19238 1.21586 0.93375 0.99552 0.96290 0.93330 1.21633 1.01733 0.99219 0.92047 1.21855 0.94353 1.00795 0.98950 1.22983 0.95332 1.00808 0.86295 1.48112 1.43104 1.32696 1.08787 1.17622 0.79001 0.79533 0.86962 1.90809 1.55793 1.65080 1.33662 1.21348 1.05503 0.99990 0.91104 1.73222 1.20574 1.18376 0.97794 1.43250 1.34435 1.18784 1.10349 0.68657 1.21597 0.99923 0.95928 0.91616 1.20112 1.04324 0.98383 0.95746 1.19932 0.98513 0.95155 0.94817 1.21661 1.00970 0.94908 0.97856 1.21587 0.97336 1.02466 0.93630 1.20478 0.96935 0.92229 0.98574 1.21394 0.94905 0.97756 0.85108 0.94538 0.94516 0.90061 0.80149 0.94364 0.90663 0.89711 0.92939 0.87431 0.83803 0.90854 0.92138 0.93540 0.91388 0.90557 0.88018 0.91926 0.87620 0.86973 0.92921 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.14 71.98 0.66 -4.84 16 2 C 0.17 7.12 2.47 44.99 0.11 7.23 16 3 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 4 N -0.74 -39.72 4.52 -322.94 -1.46 -41.18 16 5 C -0.23 -13.55 9.93 84.03 0.83 -12.71 16 6 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 7 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 8 N -0.97 -64.22 13.06 21.65 0.28 -63.93 16 9 Si 0.97 49.00 29.55 68.60 2.03 51.02 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C -0.09 -3.13 1.97 -10.73 -0.02 -3.16 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 15 C -0.11 -2.70 4.85 30.62 0.15 -2.55 16 16 C -0.12 -2.61 6.08 30.67 0.19 -2.42 16 17 C 0.07 1.69 6.33 86.36 0.55 2.24 16 18 N -0.60 -20.89 2.97 -822.50 -2.44 -23.34 16 19 C 0.58 22.94 7.70 86.75 0.67 23.61 16 20 O -0.58 -28.18 15.33 -3.95 -0.06 -28.24 16 21 C -0.02 -0.68 6.89 42.14 0.29 -0.39 16 22 N -0.26 -5.90 8.60 -48.62 -0.42 -6.32 16 23 N -0.35 -4.93 6.82 -48.18 -0.33 -5.26 16 24 H 0.46 1.96 8.96 -219.80 -1.97 -0.01 16 25 C 0.04 0.62 7.12 41.57 0.30 0.92 16 26 C -0.18 -4.63 5.99 -20.03 -0.12 -4.75 16 27 C -0.05 -1.24 5.51 29.91 0.16 -1.07 16 28 C -0.12 -1.94 5.91 30.79 0.18 -1.76 16 29 C -0.11 -1.11 5.89 30.76 0.18 -0.93 16 30 C -0.04 -0.31 6.31 29.99 0.19 -0.12 16 31 C 0.13 5.27 5.46 86.35 0.47 5.74 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 2.23 6.40 -2.39 -0.02 2.22 16 35 H 0.37 22.04 7.62 -92.71 -0.71 21.34 16 36 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.87 6.36 -2.39 -0.02 1.85 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.15 3.32 3.70 -86.74 -0.32 3.00 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.57 7.79 -2.39 -0.02 1.55 16 45 H 0.07 1.08 8.12 -2.38 -0.02 1.06 16 46 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.10 0.49 8.14 -2.38 -0.02 0.48 16 48 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 49 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.05 2.70 6.55 -2.39 -0.02 2.68 16 52 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -84.62 398.91 0.81 -83.82 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -2.05 Total: 32.93 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.25 Total: 0.50 kcal Atomic # 7 Polarization: -135.66 SS G_CDS: -4.37 Total: -140.03 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.06 Total: -28.24 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -84.62 0.81 -83.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.973 kcal (2) G-P(sol) polarization free energy of solvation -84.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds