Wall clock time and date at job start Wed Apr 1 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47543 * 2 1 4 4 N 1.46495 * 109.47147 * 239.99897 * 2 1 3 5 5 C 1.36940 * 120.00123 * 85.00117 * 4 2 1 6 6 H 1.08007 * 119.99392 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00681 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99686 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47150 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47192 * 119.99960 * 9 7 5 12 12 H 1.48500 * 109.47171 * 240.00036 * 9 7 5 13 13 C 1.53005 * 109.47388 * 120.00239 * 2 1 3 14 14 H 1.09001 * 109.49317 * 60.05894 * 13 2 1 15 15 C 1.53039 * 109.49636 * 300.00223 * 13 2 1 16 16 C 1.53041 * 109.53803 * 178.68223 * 15 13 2 17 17 C 1.53181 * 109.31311 * 61.36348 * 16 15 13 18 18 N 1.46934 * 108.77558 * 305.36388 * 17 16 15 19 19 C 1.34773 * 120.62888 * 233.58393 * 18 17 16 20 20 O 1.21572 * 119.99992 * 185.95824 * 19 18 17 21 21 C 1.47714 * 120.00195 * 5.96177 * 19 18 17 22 22 N 1.32203 * 126.67732 * 6.12907 * 21 19 18 23 23 N 1.28848 * 110.14865 * 179.97438 * 22 21 19 24 24 H 0.96994 * 124.97403 * 179.97438 * 23 22 21 25 25 C 1.34309 * 110.04329 * 359.93103 * 23 22 21 26 26 C 1.35587 * 107.21585 * 0.13112 * 25 23 22 27 27 C 1.50382 * 124.61725 * 179.84684 * 26 25 23 28 28 C 1.53472 * 108.28545 * 343.76176 * 27 26 25 29 29 C 1.53109 * 109.50584 * 49.49379 * 28 27 26 30 30 C 1.50707 * 128.90667 * 180.26288 * 25 23 22 31 31 C 1.46926 * 118.73411 * 53.86412 * 18 17 16 32 32 H 1.09004 * 109.46888 * 299.99991 * 1 2 3 33 33 H 1.09000 * 109.46836 * 59.99689 * 1 2 3 34 34 H 1.08992 * 109.47342 * 179.97438 * 1 2 3 35 35 H 0.97005 * 120.00698 * 265.00105 * 4 2 1 36 36 H 0.96999 * 119.99944 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46652 * 58.65770 * 15 13 2 38 38 H 1.09005 * 109.45890 * 298.70015 * 15 13 2 39 39 H 1.08998 * 109.49609 * 301.40460 * 16 15 13 40 40 H 1.09004 * 109.49270 * 181.31491 * 16 15 13 41 41 H 1.09004 * 109.58746 * 185.57845 * 17 16 15 42 42 H 1.09002 * 109.70993 * 65.21971 * 17 16 15 43 43 H 1.08996 * 109.69981 * 103.46840 * 27 26 25 44 44 H 1.09007 * 109.69605 * 224.06740 * 27 26 25 45 45 H 1.08994 * 109.46455 * 169.50338 * 28 27 26 46 46 H 1.08999 * 109.46354 * 289.47879 * 28 27 26 47 47 H 1.09001 * 109.44051 * 169.89380 * 29 28 27 48 48 H 1.08999 * 109.41827 * 49.97843 * 29 28 27 49 49 H 1.09008 * 109.69032 * 282.94200 * 30 25 23 50 50 H 1.08995 * 109.69166 * 43.48001 * 30 25 23 51 51 H 1.08998 * 109.58747 * 65.92912 * 31 18 17 52 52 H 1.09003 * 109.57919 * 186.35106 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0406 -2.4241 7 6 2.6113 -0.6619 -3.5093 8 7 2.9234 -1.9392 -3.4504 9 14 2.7904 0.2703 -5.1182 10 1 2.3776 1.6829 -4.9204 11 1 4.2073 0.2264 -5.5606 12 1 1.9292 -0.3574 -6.1524 13 6 2.0401 -0.7213 1.2492 14 1 1.6778 -1.7494 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0127 -0.7401 3.7492 17 6 3.5441 -0.7371 3.7801 18 7 4.0438 -1.2972 2.5170 19 6 4.9188 -2.3223 2.5190 20 8 5.4078 -2.7061 1.4742 21 6 5.2835 -2.9797 3.7905 22 7 4.7529 -2.7490 4.9793 23 7 5.3084 -3.5003 5.8665 24 1 5.0828 -3.5065 6.8099 25 6 6.2447 -4.2742 5.2936 26 6 6.2616 -3.9718 3.9720 27 6 7.1730 -4.6109 2.9609 28 6 8.3083 -5.3170 3.7144 29 6 7.7187 -6.1938 4.8225 30 6 7.1407 -5.3048 5.9310 31 6 3.5762 -0.7144 1.2519 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 3.2467 -2.3964 -4.2425 37 1 0.4405 0.0204 2.4875 38 1 1.9126 1.0203 2.5111 39 1 1.6511 -1.7681 3.7258 40 1 1.6298 -0.2394 4.6385 41 1 3.8940 -1.3462 4.6137 42 1 3.9075 0.2840 3.8960 43 1 6.6150 -5.3383 2.3713 44 1 7.5877 -3.8457 2.3046 45 1 8.8728 -5.9395 3.0203 46 1 8.9706 -4.5716 4.1547 47 1 8.5013 -6.8288 5.2377 48 1 6.9269 -6.8178 4.4081 49 1 7.9517 -4.8075 6.4633 50 1 6.5634 -5.9133 6.6270 51 1 3.9400 0.3093 1.1647 52 1 3.9472 -1.3087 0.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667332730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:41 Heat of formation + Delta-G solvation = 42.634197 kcal Electronic energy + Delta-G solvation = -31529.734093 eV Core-core repulsion = 27530.454732 eV Total energy + Delta-G solvation = -3999.279360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.03301 -39.69760 -37.56677 -37.14256 -35.28547 -33.05757 -32.59284 -31.60584 -30.24908 -30.09596 -29.34922 -28.07765 -25.59586 -24.33487 -24.00470 -23.09523 -22.70588 -22.23495 -20.76938 -19.45684 -19.26697 -18.75416 -17.97877 -17.10513 -16.59207 -16.08711 -15.49610 -15.03186 -14.75831 -14.57898 -14.39343 -14.18610 -13.96781 -13.81847 -13.63544 -13.46271 -13.30444 -13.12095 -12.88444 -12.70288 -12.51078 -12.31665 -12.21351 -11.92686 -11.39668 -11.18546 -11.10941 -11.01556 -10.91702 -10.83693 -10.78411 -10.63741 -10.60382 -10.15054 -10.10255 -9.99656 -9.80151 -9.55363 -9.45318 -9.37982 -8.80884 -8.78203 -8.23847 -6.83079 -5.63498 -2.92417 1.48998 1.97896 2.57593 3.28720 3.51262 3.56232 3.56543 3.58890 4.19873 4.33634 4.51597 4.59165 4.68102 4.92250 4.96200 5.04705 5.11739 5.16097 5.18038 5.25833 5.31148 5.34126 5.41180 5.57647 5.62787 5.67232 5.69268 5.79258 5.85451 5.90753 5.93489 5.95634 6.00328 6.10351 6.14247 6.15368 6.18032 6.28967 6.32617 6.35222 6.46162 6.53658 6.59847 6.66066 6.78809 6.83809 7.00177 7.03000 7.20187 7.63059 7.81480 7.82179 8.47125 8.54163 9.65227 10.23765 10.58324 11.58847 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.002911 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.698599 B = 9616.758788 C =11450.528262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.101 4.101 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.127 4.127 17 C 0.075 3.925 18 N -0.597 5.597 19 C 0.593 3.407 20 O -0.519 6.519 21 C 0.011 3.989 22 N -0.266 5.266 23 N -0.381 5.381 24 H 0.442 0.558 25 C 0.010 3.990 26 C -0.141 4.141 27 C -0.045 4.045 28 C -0.121 4.121 29 C -0.115 4.115 30 C -0.046 4.046 31 C 0.124 3.876 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -5.282 26.419 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.221 1.221 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.049 4.049 18 N -0.330 5.330 19 C 0.378 3.622 20 O -0.392 6.392 21 C -0.149 4.149 22 N -0.101 5.101 23 N -0.092 5.092 24 H 0.286 0.714 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.158 4.158 29 C -0.153 4.153 30 C -0.085 4.085 31 C 0.003 3.997 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.375 -4.705 26.177 27.350 hybrid contribution 0.293 -0.122 -0.696 0.765 sum 6.669 -4.827 25.481 26.778 Atomic orbital electron populations 1.22475 0.99383 1.00752 0.99808 1.20177 0.91763 0.95261 0.85846 0.93551 1.42463 1.78041 1.10767 1.05286 1.19237 1.36411 0.93749 0.87323 0.91290 1.24728 1.02344 0.95937 0.97934 1.69681 1.50841 1.08564 1.28610 0.86177 0.77264 0.78742 0.84368 1.20687 1.21949 1.22053 1.21826 0.94662 1.00416 0.95250 0.91266 1.21650 1.00795 0.99040 0.93877 1.21839 0.95403 1.01113 0.98215 1.22599 0.94517 0.99858 0.87897 1.48000 1.43623 1.33077 1.08298 1.17016 0.79415 0.79640 0.86094 1.90851 1.52921 1.64078 1.31394 1.21774 0.99781 1.01184 0.92130 1.73463 1.21691 1.16462 0.98503 1.43165 1.27157 1.28184 1.10666 0.71443 1.21141 0.97098 0.99716 0.93762 1.19904 1.01015 1.00156 0.94022 1.20008 0.93920 0.99363 0.95005 1.21670 0.97792 0.98876 0.97510 1.21570 1.00665 0.97543 0.95537 1.20227 0.96546 0.93853 0.97898 1.21812 0.93776 0.98898 0.85247 0.94305 0.92943 0.93653 0.78185 0.93642 0.91452 0.92038 0.91890 0.91436 0.85189 0.92404 0.90265 0.89701 0.91065 0.91790 0.90948 0.91204 0.89985 0.90384 0.91765 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.14 37.16 0.34 -2.70 16 2 C 0.18 3.64 2.47 -67.93 -0.17 3.48 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -18.58 4.52 -53.43 -0.24 -18.82 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 9 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 C -0.10 -1.77 1.99 -90.28 -0.18 -1.95 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.58 4.85 -26.69 -0.13 -1.71 16 16 C -0.13 -1.55 6.08 -26.62 -0.16 -1.71 16 17 C 0.08 0.99 6.33 -3.71 -0.02 0.96 16 18 N -0.60 -9.96 2.97 -173.67 -0.52 -10.48 16 19 C 0.59 10.74 7.69 -12.39 -0.10 10.65 16 20 O -0.52 -11.24 15.35 5.30 0.08 -11.16 16 21 C 0.01 0.16 6.86 -82.99 -0.57 -0.41 16 22 N -0.27 -3.20 8.66 33.28 0.29 -2.91 16 23 N -0.38 -3.26 6.82 33.42 0.23 -3.04 16 24 H 0.44 1.96 8.96 -190.22 -1.70 0.26 16 25 C 0.01 0.10 7.12 -82.45 -0.59 -0.49 16 26 C -0.14 -1.81 5.99 -104.87 -0.63 -2.44 16 27 C -0.04 -0.54 5.51 -27.79 -0.15 -0.70 16 28 C -0.12 -1.00 5.91 -26.43 -0.16 -1.15 16 29 C -0.12 -0.74 5.89 -26.47 -0.16 -0.89 16 30 C -0.05 -0.27 6.31 -27.67 -0.17 -0.44 16 31 C 0.12 2.33 5.48 -3.49 -0.02 2.31 16 32 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.38 10.72 7.64 -40.82 -0.31 10.41 16 36 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 1.62 3.75 -108.21 -0.41 1.22 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.18 7.80 -51.93 -0.41 0.77 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 49 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 52 H 0.11 2.45 6.58 -51.93 -0.34 2.11 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -34.76 399.09 -11.69 -46.45 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -10.14 Total: 8.75 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.11 Total: -4.52 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.48 Total: -63.62 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.76 -11.69 -46.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.082 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds