Wall clock time and date at job start Wed Apr 1 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47543 * 2 1 4 4 N 1.46495 * 109.47147 * 239.99897 * 2 1 3 5 5 C 1.36940 * 120.00123 * 85.00117 * 4 2 1 6 6 H 1.08007 * 119.99392 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00681 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99686 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47150 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47192 * 119.99960 * 9 7 5 12 12 H 1.48500 * 109.47171 * 240.00036 * 9 7 5 13 13 C 1.53005 * 109.47388 * 120.00239 * 2 1 3 14 14 H 1.09001 * 109.49317 * 60.05894 * 13 2 1 15 15 C 1.53039 * 109.49636 * 300.00223 * 13 2 1 16 16 C 1.53041 * 109.53803 * 178.68223 * 15 13 2 17 17 C 1.53181 * 109.31311 * 61.36348 * 16 15 13 18 18 N 1.46934 * 108.77558 * 305.36388 * 17 16 15 19 19 C 1.34773 * 120.62888 * 233.58393 * 18 17 16 20 20 O 1.21572 * 119.99992 * 185.95824 * 19 18 17 21 21 C 1.47714 * 120.00195 * 5.96177 * 19 18 17 22 22 N 1.32203 * 126.67732 * 6.12907 * 21 19 18 23 23 N 1.28848 * 110.14865 * 179.97438 * 22 21 19 24 24 H 0.96994 * 124.97403 * 179.97438 * 23 22 21 25 25 C 1.34309 * 110.04329 * 359.93103 * 23 22 21 26 26 C 1.35587 * 107.21585 * 0.13112 * 25 23 22 27 27 C 1.50382 * 124.61725 * 179.84684 * 26 25 23 28 28 C 1.53472 * 108.28545 * 343.76176 * 27 26 25 29 29 C 1.53109 * 109.50584 * 49.49379 * 28 27 26 30 30 C 1.50707 * 128.90667 * 180.26288 * 25 23 22 31 31 C 1.46926 * 118.73411 * 53.86412 * 18 17 16 32 32 H 1.09004 * 109.46888 * 299.99991 * 1 2 3 33 33 H 1.09000 * 109.46836 * 59.99689 * 1 2 3 34 34 H 1.08992 * 109.47342 * 179.97438 * 1 2 3 35 35 H 0.97005 * 120.00698 * 265.00105 * 4 2 1 36 36 H 0.96999 * 119.99944 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46652 * 58.65770 * 15 13 2 38 38 H 1.09005 * 109.45890 * 298.70015 * 15 13 2 39 39 H 1.08998 * 109.49609 * 301.40460 * 16 15 13 40 40 H 1.09004 * 109.49270 * 181.31491 * 16 15 13 41 41 H 1.09004 * 109.58746 * 185.57845 * 17 16 15 42 42 H 1.09002 * 109.70993 * 65.21971 * 17 16 15 43 43 H 1.08996 * 109.69981 * 103.46840 * 27 26 25 44 44 H 1.09007 * 109.69605 * 224.06740 * 27 26 25 45 45 H 1.08994 * 109.46455 * 169.50338 * 28 27 26 46 46 H 1.08999 * 109.46354 * 289.47879 * 28 27 26 47 47 H 1.09001 * 109.44051 * 169.89380 * 29 28 27 48 48 H 1.08999 * 109.41827 * 49.97843 * 29 28 27 49 49 H 1.09008 * 109.69032 * 282.94200 * 30 25 23 50 50 H 1.08995 * 109.69166 * 43.48001 * 30 25 23 51 51 H 1.08998 * 109.58747 * 65.92912 * 31 18 17 52 52 H 1.09003 * 109.57919 * 186.35106 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0406 -2.4241 7 6 2.6113 -0.6619 -3.5093 8 7 2.9234 -1.9392 -3.4504 9 14 2.7904 0.2703 -5.1182 10 1 2.3776 1.6829 -4.9204 11 1 4.2073 0.2264 -5.5606 12 1 1.9292 -0.3574 -6.1524 13 6 2.0401 -0.7213 1.2492 14 1 1.6778 -1.7494 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0127 -0.7401 3.7492 17 6 3.5441 -0.7371 3.7801 18 7 4.0438 -1.2972 2.5170 19 6 4.9188 -2.3223 2.5190 20 8 5.4078 -2.7061 1.4742 21 6 5.2835 -2.9797 3.7905 22 7 4.7529 -2.7490 4.9793 23 7 5.3084 -3.5003 5.8665 24 1 5.0828 -3.5065 6.8099 25 6 6.2447 -4.2742 5.2936 26 6 6.2616 -3.9718 3.9720 27 6 7.1730 -4.6109 2.9609 28 6 8.3083 -5.3170 3.7144 29 6 7.7187 -6.1938 4.8225 30 6 7.1407 -5.3048 5.9310 31 6 3.5762 -0.7144 1.2519 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 3.2467 -2.3964 -4.2425 37 1 0.4405 0.0204 2.4875 38 1 1.9126 1.0203 2.5111 39 1 1.6511 -1.7681 3.7258 40 1 1.6298 -0.2394 4.6385 41 1 3.8940 -1.3462 4.6137 42 1 3.9075 0.2840 3.8960 43 1 6.6150 -5.3383 2.3713 44 1 7.5877 -3.8457 2.3046 45 1 8.8728 -5.9395 3.0203 46 1 8.9706 -4.5716 4.1547 47 1 8.5013 -6.8288 5.2377 48 1 6.9269 -6.8178 4.4081 49 1 7.9517 -4.8075 6.4633 50 1 6.5634 -5.9133 6.6270 51 1 3.9400 0.3093 1.1647 52 1 3.9472 -1.3087 0.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667332730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:40 Heat of formation + Delta-G solvation = 19.660564 kcal Electronic energy + Delta-G solvation = -31530.730304 eV Core-core repulsion = 27530.454732 eV Total energy + Delta-G solvation = -4000.275572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.93307 -41.05941 -39.03883 -37.87049 -36.92000 -34.70044 -33.68966 -33.11049 -31.53176 -30.95632 -30.57387 -29.68652 -26.89430 -26.09541 -24.80032 -24.62063 -23.84837 -23.04896 -22.13717 -21.02663 -20.11566 -19.87247 -19.13593 -18.88290 -17.80591 -17.07009 -16.88178 -16.69565 -16.17498 -15.63246 -15.58062 -15.42364 -15.36647 -15.05186 -14.73535 -14.64515 -14.29802 -14.23765 -14.12016 -13.97394 -13.90896 -13.77974 -13.36943 -13.02493 -12.99172 -12.81442 -12.58989 -12.38165 -12.22725 -12.10344 -11.93355 -11.74842 -11.71369 -11.70790 -11.61191 -11.48308 -11.23631 -11.18828 -10.97672 -10.72510 -10.38180 -9.67557 -9.57666 -8.98084 -7.90593 -5.19368 0.42105 1.06382 1.44685 1.46852 1.56344 1.72812 2.12598 2.27497 2.56990 3.22497 3.42624 3.63195 3.67753 3.80686 3.87790 3.98518 4.03238 4.09987 4.16560 4.20699 4.27130 4.34546 4.34883 4.47949 4.57168 4.59764 4.65356 4.69919 4.76401 4.79810 4.86923 4.92101 4.96736 5.01406 5.03066 5.06974 5.07961 5.14533 5.15489 5.25226 5.27620 5.30944 5.36706 5.47248 5.48634 5.49540 5.55756 5.60589 5.66744 6.12845 6.30307 6.39994 6.84159 7.12740 7.35208 8.12792 8.35130 9.33295 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.002911 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.698599 B = 9616.758788 C =11450.528262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.298 1.298 12 H -0.294 1.294 13 C -0.088 4.088 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.119 4.119 17 C 0.070 3.930 18 N -0.596 5.596 19 C 0.582 3.418 20 O -0.575 6.575 21 C -0.023 4.023 22 N -0.262 5.262 23 N -0.354 5.354 24 H 0.464 0.536 25 C 0.038 3.962 26 C -0.175 4.175 27 C -0.046 4.046 28 C -0.115 4.115 29 C -0.114 4.114 30 C -0.043 4.043 31 C 0.131 3.869 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.367 0.633 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.143 0.857 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.110 0.890 51 H 0.065 0.935 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -4.452 31.028 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.225 1.225 12 H -0.222 1.222 13 C -0.108 4.108 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.157 4.157 17 C -0.052 4.052 18 N -0.328 5.328 19 C 0.369 3.631 20 O -0.453 6.453 21 C -0.181 4.181 22 N -0.099 5.099 23 N -0.068 5.068 24 H 0.313 0.687 25 C -0.091 4.091 26 C -0.186 4.186 27 C -0.084 4.084 28 C -0.153 4.153 29 C -0.152 4.152 30 C -0.082 4.082 31 C 0.009 3.991 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.198 0.802 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.120 0.880 48 H 0.078 0.922 49 H 0.126 0.874 50 H 0.128 0.872 51 H 0.083 0.917 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.805 -3.806 30.878 31.648 hybrid contribution 0.467 -0.373 -1.995 2.082 sum 6.272 -4.179 28.883 29.850 Atomic orbital electron populations 1.22311 0.97245 1.00585 1.01094 1.20468 0.93105 0.94957 0.84997 0.93398 1.42701 1.78374 1.10142 1.06516 1.19650 1.34313 0.94093 0.88167 0.90406 1.25586 1.03345 0.96857 1.01622 1.69871 1.52944 1.10425 1.29113 0.85095 0.76566 0.78327 0.79955 1.18647 1.22545 1.22169 1.21667 0.93312 0.99533 0.96262 0.93329 1.21639 1.01730 0.99215 0.92070 1.21821 0.94199 1.00837 0.98884 1.22914 0.95516 1.00569 0.86224 1.48104 1.43171 1.32700 1.08786 1.17619 0.78902 0.79644 0.86906 1.90807 1.55020 1.65759 1.33733 1.21348 1.02002 1.03003 0.91699 1.73272 1.21673 1.17112 0.97866 1.43241 1.25773 1.26498 1.11311 0.68664 1.21600 0.96206 0.98996 0.92332 1.20121 1.01568 1.00868 0.95999 1.19937 0.95169 0.98230 0.95097 1.21652 0.96306 0.99168 0.98140 1.21597 1.01201 0.97399 0.94964 1.20473 0.96802 0.93024 0.97876 1.21487 0.94881 0.97714 0.85058 0.90056 0.94517 0.94546 0.80163 0.94379 0.89711 0.90670 0.92867 0.87456 0.84070 0.90990 0.92549 0.93179 0.90581 0.91053 0.87967 0.92229 0.87398 0.87157 0.91724 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.14 71.98 0.66 -4.84 16 2 C 0.17 7.10 2.47 44.99 0.11 7.21 16 3 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 4 N -0.74 -39.71 4.52 -322.94 -1.46 -41.17 16 5 C -0.23 -13.43 9.93 84.03 0.83 -12.60 16 6 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 7 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 8 N -0.97 -64.28 13.06 21.65 0.28 -63.99 16 9 Si 0.97 49.01 29.55 68.60 2.03 51.04 16 10 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 13 C -0.09 -3.12 1.99 -10.57 -0.02 -3.14 16 14 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 15 C -0.11 -2.70 4.85 30.62 0.15 -2.56 16 16 C -0.12 -2.56 6.08 30.67 0.19 -2.37 16 17 C 0.07 1.73 6.33 86.36 0.55 2.28 16 18 N -0.60 -20.88 2.97 -821.63 -2.44 -23.32 16 19 C 0.58 22.95 7.69 86.75 0.67 23.61 16 20 O -0.58 -28.15 15.35 -3.94 -0.06 -28.21 16 21 C -0.02 -0.72 6.86 42.14 0.29 -0.43 16 22 N -0.26 -5.92 8.66 -48.62 -0.42 -6.34 16 23 N -0.35 -4.97 6.82 -48.18 -0.33 -5.30 16 24 H 0.46 2.03 8.96 -219.81 -1.97 0.06 16 25 C 0.04 0.61 7.12 41.57 0.30 0.90 16 26 C -0.18 -4.62 5.99 -20.03 -0.12 -4.74 16 27 C -0.05 -1.23 5.51 29.91 0.16 -1.06 16 28 C -0.12 -1.86 5.91 30.79 0.18 -1.67 16 29 C -0.11 -1.14 5.89 30.77 0.18 -0.96 16 30 C -0.04 -0.31 6.31 29.99 0.19 -0.12 16 31 C 0.13 5.27 5.48 86.51 0.47 5.75 16 32 H 0.08 2.23 6.40 -2.38 -0.02 2.22 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 22.04 7.64 -92.70 -0.71 21.34 16 36 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 37 H 0.08 1.86 6.36 -2.39 -0.02 1.85 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.14 3.26 3.75 -75.22 -0.28 2.98 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.62 7.80 -2.38 -0.02 1.60 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 47 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 49 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 50 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.05 2.68 6.58 -2.39 -0.02 2.66 16 Total: -1.00 -84.71 399.09 0.85 -83.86 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -2.01 Total: 32.72 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.25 Total: 0.71 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -4.37 Total: -140.12 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.06 Total: -28.21 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Total: -84.71 0.85 -83.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.523 kcal (2) G-P(sol) polarization free energy of solvation -84.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds