Wall clock time and date at job start Wed Apr 1 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08987 * 109.47392 * 2 1 4 4 N 1.46502 * 109.46525 * 239.99976 * 2 1 3 5 5 C 1.36936 * 120.00075 * 85.00491 * 4 2 1 6 6 H 1.08002 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00077 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00067 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46832 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47121 * 119.99981 * 9 7 5 12 12 H 1.48499 * 109.47134 * 240.00214 * 9 7 5 13 13 C 1.53009 * 109.47142 * 120.00420 * 2 1 3 14 14 H 1.08997 * 109.49358 * 179.97438 * 13 2 1 15 15 C 1.53037 * 109.49288 * 299.99617 * 13 2 1 16 16 C 1.53039 * 109.53558 * 181.31740 * 15 13 2 17 17 C 1.53195 * 109.31350 * 298.63346 * 16 15 13 18 18 N 1.46926 * 108.77202 * 54.63572 * 17 16 15 19 19 C 1.34781 * 120.63231 * 126.37011 * 18 17 16 20 20 O 1.21569 * 120.00005 * 186.93235 * 19 18 17 21 21 C 1.47712 * 119.99721 * 6.93471 * 19 18 17 22 22 N 1.32208 * 126.67680 * 5.99432 * 21 19 18 23 23 N 1.28849 * 110.14862 * 180.25186 * 22 21 19 24 24 H 0.96999 * 124.97716 * 179.97438 * 23 22 21 25 25 C 1.34315 * 110.03873 * 359.93983 * 23 22 21 26 26 C 1.35577 * 107.21892 * 0.10959 * 25 23 22 27 27 C 1.50381 * 124.61704 * 179.78082 * 26 25 23 28 28 C 1.53466 * 108.29308 * 343.77444 * 27 26 25 29 29 C 1.53117 * 109.51584 * 49.46592 * 28 27 26 30 30 C 1.50713 * 128.89897 * 180.15337 * 25 23 22 31 31 C 1.46928 * 118.74049 * 306.64272 * 18 17 16 32 32 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46635 * 299.99937 * 1 2 3 34 34 H 1.08995 * 109.46980 * 59.99667 * 1 2 3 35 35 H 0.97003 * 119.99903 * 264.99673 * 4 2 1 36 36 H 0.96994 * 120.00112 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.46142 * 61.30117 * 15 13 2 38 38 H 1.09005 * 109.45439 * 301.32885 * 15 13 2 39 39 H 1.09002 * 109.50188 * 178.68357 * 16 15 13 40 40 H 1.09007 * 109.49816 * 58.58300 * 16 15 13 41 41 H 1.08996 * 109.58657 * 294.84643 * 17 16 15 42 42 H 1.09000 * 109.58485 * 174.41997 * 17 16 15 43 43 H 1.09004 * 109.69715 * 103.45478 * 27 26 25 44 44 H 1.08999 * 109.70172 * 224.05340 * 27 26 25 45 45 H 1.09002 * 109.45263 * 289.45898 * 28 27 26 46 46 H 1.08997 * 109.46277 * 169.48021 * 28 27 26 47 47 H 1.08996 * 109.43714 * 169.90532 * 29 28 27 48 48 H 1.08994 * 109.43924 * 50.01342 * 29 28 27 49 49 H 1.09005 * 109.69343 * 283.01687 * 30 25 23 50 50 H 1.09001 * 109.69628 * 43.55979 * 30 25 23 51 51 H 1.08998 * 109.58959 * 173.14928 * 31 18 17 52 52 H 1.09008 * 109.58563 * 293.57118 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6121 -0.6618 -3.5091 8 7 2.9260 -1.9386 -3.4498 9 14 2.7913 0.2703 -5.1180 10 1 2.3763 1.6825 -4.9208 11 1 4.2083 0.2273 -5.5599 12 1 1.9309 -0.3580 -6.1525 13 6 2.0401 -0.7214 1.2493 14 1 3.1301 -0.7220 1.2494 15 6 1.5303 -0.0004 2.4992 16 6 2.0668 -0.7017 3.7491 17 6 1.5534 -2.1448 3.7801 18 7 1.9149 -2.8025 2.5171 19 6 2.5906 -3.9687 2.5189 20 8 2.9939 -4.4392 1.4730 21 6 2.8409 -4.6751 3.7918 22 7 2.3723 -4.3455 4.9833 23 7 2.7942 -5.1777 5.8719 24 1 2.5810 -5.1373 6.8173 25 6 3.5719 -6.1099 5.2971 26 6 3.6284 -5.8245 3.9729 27 6 4.4019 -6.6218 2.9593 28 6 5.4021 -7.5125 3.7087 29 6 4.6784 -8.2632 4.8300 30 6 4.2785 -7.2780 5.9357 31 6 1.5313 -2.1617 1.2518 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 2.2490 -1.6318 -1.1527 36 1 3.2499 -2.3957 -4.2416 37 1 0.4406 -0.0206 2.5110 38 1 1.8743 1.0339 2.4874 39 1 1.7226 -0.1740 4.6386 40 1 3.1566 -0.7038 3.7257 41 1 0.4695 -2.1446 3.8949 42 1 2.0111 -2.6776 4.6137 43 1 3.7181 -7.2434 2.3813 44 1 4.9384 -5.9468 2.2925 45 1 6.1904 -6.8930 4.1363 46 1 5.8401 -8.2301 3.0149 47 1 5.3407 -9.0236 5.2437 48 1 3.7845 -8.7406 4.4287 49 1 5.1701 -6.9281 6.4560 50 1 3.6101 -7.7698 6.6424 51 1 1.9742 -2.7058 0.4176 52 1 0.4454 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667332731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:45 Heat of formation + Delta-G solvation = 20.379809 kcal Electronic energy + Delta-G solvation = -31560.323610 eV Core-core repulsion = 27560.079227 eV Total energy + Delta-G solvation = -4000.244383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.92368 -41.14962 -39.12553 -37.86871 -36.90356 -34.72579 -33.66516 -33.18679 -31.52580 -30.95531 -30.54831 -29.36371 -27.03181 -26.27005 -24.83408 -24.61691 -24.18968 -23.06723 -22.30749 -20.56434 -20.05926 -19.77374 -19.19128 -18.83954 -17.77542 -17.13805 -16.98431 -16.68748 -16.03408 -15.81726 -15.56151 -15.41978 -15.28467 -15.24322 -14.73983 -14.66179 -14.36396 -14.26514 -14.05465 -14.00444 -13.91733 -13.85433 -13.31664 -13.02364 -12.94177 -12.86828 -12.66251 -12.46080 -12.15095 -11.99380 -11.79995 -11.78961 -11.73988 -11.71079 -11.61459 -11.52540 -11.25519 -11.18922 -10.95608 -10.83298 -10.36744 -9.66883 -9.55467 -9.00245 -7.91139 -5.21009 0.42984 1.06398 1.44625 1.46795 1.56661 1.73342 2.11419 2.27670 2.56514 3.22254 3.41146 3.63403 3.68520 3.81060 3.90144 3.95024 4.02274 4.07355 4.13291 4.20426 4.26639 4.34369 4.35642 4.43089 4.57111 4.62321 4.64206 4.66848 4.71049 4.76303 4.83672 4.90889 4.96371 5.01424 5.04861 5.08836 5.10596 5.12666 5.14953 5.23642 5.25223 5.30953 5.35714 5.44406 5.47291 5.48328 5.54375 5.60828 5.69055 6.12469 6.29680 6.38739 6.82272 7.12122 7.34362 8.12733 8.34542 9.32566 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002818 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.601807 B = 9932.637968 C =11687.249521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.090 4.090 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.083 3.917 18 N -0.596 5.596 19 C 0.582 3.418 20 O -0.575 6.575 21 C -0.025 4.025 22 N -0.261 5.261 23 N -0.354 5.354 24 H 0.464 0.536 25 C 0.036 3.964 26 C -0.175 4.175 27 C -0.046 4.046 28 C -0.116 4.116 29 C -0.113 4.113 30 C -0.044 4.044 31 C 0.126 3.874 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.370 0.630 36 H 0.248 0.752 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.131 0.869 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.061 0.939 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.050 0.950 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -8.868 30.941 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.383 5.383 5 C -0.366 4.366 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.804 3.196 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.222 1.222 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.145 4.145 16 C -0.164 4.164 17 C -0.039 4.039 18 N -0.328 5.328 19 C 0.369 3.631 20 O -0.453 6.453 21 C -0.182 4.182 22 N -0.098 5.098 23 N -0.069 5.069 24 H 0.314 0.686 25 C -0.092 4.092 26 C -0.186 4.186 27 C -0.084 4.084 28 C -0.154 4.154 29 C -0.151 4.151 30 C -0.082 4.082 31 C 0.003 3.997 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.148 0.852 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.068 0.932 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.855 -8.138 30.788 31.857 hybrid contribution 0.599 -0.363 -1.957 2.079 sum -0.256 -8.502 28.831 30.060 Atomic orbital electron populations 1.22393 0.97223 1.00838 1.01169 1.20461 0.93295 0.94847 0.84942 0.93384 1.42820 1.78490 1.10384 1.06571 1.19699 1.34461 0.94207 0.88275 0.90323 1.25636 1.03262 0.96880 1.01751 1.69889 1.52835 1.10498 1.29208 0.85050 0.76637 0.78251 0.79712 1.18630 1.22346 1.22200 1.21514 0.99043 0.94116 0.96387 0.93987 1.21620 1.01774 0.99247 0.91885 1.21913 1.00345 0.94967 0.99142 1.22692 1.01605 0.93988 0.85565 1.48092 1.54868 1.21076 1.08737 1.17608 0.77611 0.80879 0.86958 1.90813 1.52624 1.68099 1.33727 1.21334 1.05406 0.99778 0.91709 1.73522 1.22138 1.16473 0.97688 1.43221 1.34277 1.18215 1.11169 0.68649 1.21594 0.98916 0.96473 0.92253 1.20116 1.04422 0.98078 0.95941 1.19931 0.96781 0.96634 0.95078 1.21657 0.97215 0.98324 0.98170 1.21588 1.01069 0.97583 0.94810 1.20471 1.00166 0.89654 0.97908 1.21459 0.99660 0.93359 0.85220 0.93967 0.89984 0.94557 0.79801 0.94301 0.89706 0.90438 0.87242 0.93274 0.90218 0.85190 0.92221 0.93466 0.91321 0.90576 0.88028 0.92007 0.87593 0.87061 0.93191 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 8.79 71.98 0.63 -4.97 16 2 C 0.17 7.16 2.72 45.00 0.12 7.29 16 3 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 4 N -0.74 -40.44 5.04 -322.93 -1.63 -42.07 16 5 C -0.23 -13.79 9.93 84.03 0.83 -12.95 16 6 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 7 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 8 N -0.97 -64.69 13.06 21.65 0.28 -64.41 16 9 Si 0.97 48.95 29.55 68.60 2.03 50.98 16 10 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 12 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 13 C -0.09 -3.26 2.32 -10.86 -0.03 -3.29 16 14 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.11 -2.68 4.78 30.62 0.15 -2.53 16 16 C -0.13 -2.70 6.08 30.67 0.19 -2.51 16 17 C 0.08 2.02 6.13 86.36 0.53 2.55 16 18 N -0.60 -20.43 2.98 -823.28 -2.45 -22.88 16 19 C 0.58 22.64 7.69 86.75 0.67 23.31 16 20 O -0.57 -27.85 15.32 -3.93 -0.06 -27.91 16 21 C -0.03 -0.76 6.82 42.14 0.29 -0.48 16 22 N -0.26 -5.80 8.74 -48.62 -0.42 -6.23 16 23 N -0.35 -4.90 6.82 -48.18 -0.33 -5.23 16 24 H 0.46 1.95 8.96 -219.80 -1.97 -0.02 16 25 C 0.04 0.58 7.12 41.57 0.30 0.88 16 26 C -0.18 -4.59 5.99 -20.03 -0.12 -4.71 16 27 C -0.05 -1.23 5.51 29.90 0.16 -1.06 16 28 C -0.12 -1.91 5.91 30.79 0.18 -1.73 16 29 C -0.11 -1.11 5.89 30.77 0.18 -0.93 16 30 C -0.04 -0.31 6.31 29.99 0.19 -0.12 16 31 C 0.13 4.87 5.21 86.22 0.45 5.32 16 32 H 0.04 1.55 6.32 -2.39 -0.02 1.54 16 33 H 0.08 2.23 6.46 -2.38 -0.02 2.21 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.37 22.37 6.17 -92.71 -0.57 21.79 16 36 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.08 1.85 6.50 -2.39 -0.02 1.84 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.13 2.96 4.15 -27.33 -0.11 2.85 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.05 1.57 7.79 -2.39 -0.02 1.55 16 45 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 49 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 50 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 51 H 0.05 2.47 5.58 -2.39 -0.01 2.46 16 52 H 0.08 2.86 6.16 -2.38 -0.01 2.85 16 Total: -1.00 -85.52 393.63 0.91 -84.61 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -1.69 Total: 33.75 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.19 Total: -0.60 kcal Atomic # 7 Polarization: -136.27 SS G_CDS: -4.55 Total: -140.82 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -85.52 0.91 -84.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.989 kcal (2) G-P(sol) polarization free energy of solvation -85.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds