Wall clock time and date at job start Wed Apr 1 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47509 * 2 1 4 4 N 1.46499 * 109.47420 * 239.99136 * 2 1 3 5 5 C 1.36942 * 119.99664 * 85.00354 * 4 2 1 6 6 H 1.08000 * 120.00086 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00210 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00081 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46918 * 120.00128 * 9 7 5 12 12 H 1.48495 * 109.47266 * 239.99827 * 9 7 5 13 13 C 1.53004 * 109.46904 * 119.99586 * 2 1 3 14 14 H 1.09001 * 109.49809 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.49621 * 299.99914 * 13 2 1 16 16 C 1.53042 * 109.53732 * 181.34713 * 15 13 2 17 17 C 1.53194 * 109.31453 * 298.63663 * 16 15 13 18 18 N 1.46925 * 108.77037 * 54.63347 * 17 16 15 19 19 C 1.34774 * 120.62487 * 126.37405 * 18 17 16 20 20 O 1.21283 * 120.00238 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00436 * 359.97438 * 19 18 17 22 22 N 1.46503 * 109.47726 * 180.02562 * 21 19 18 23 23 C 1.34940 * 126.03757 * 124.99465 * 22 21 19 24 24 C 1.35317 * 107.74438 * 179.77616 * 23 22 21 25 25 C 1.50702 * 126.04137 * 180.20917 * 24 23 22 26 26 C 1.52993 * 117.50294 * 188.62463 * 25 24 23 27 27 C 1.52999 * 117.49786 * 119.99875 * 25 24 23 28 28 C 1.39872 * 107.92021 * 0.23195 * 24 23 22 29 29 N 1.30838 * 108.20312 * 359.97438 * 28 24 23 30 30 C 1.46917 * 118.74271 * 306.64030 * 18 17 16 31 31 H 1.09007 * 109.46936 * 60.00438 * 1 2 3 32 32 H 1.09001 * 109.47509 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47563 * 300.00809 * 1 2 3 34 34 H 0.96997 * 120.00531 * 265.00484 * 4 2 1 35 35 H 0.97000 * 120.00678 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.45956 * 61.33107 * 15 13 2 37 37 H 1.09000 * 109.45031 * 301.36503 * 15 13 2 38 38 H 1.09003 * 109.49311 * 178.68274 * 16 15 13 39 39 H 1.09000 * 109.52087 * 58.60816 * 16 15 13 40 40 H 1.08999 * 109.58272 * 294.84528 * 17 16 15 41 41 H 1.08995 * 109.58433 * 174.42256 * 17 16 15 42 42 H 1.09005 * 109.47160 * 60.00346 * 21 19 18 43 43 H 1.08999 * 109.47383 * 300.00836 * 21 19 18 44 44 H 1.08002 * 126.13053 * 0.04913 * 23 22 21 45 45 H 1.09003 * 115.54937 * 334.33175 * 25 24 23 46 46 H 1.09000 * 117.49721 * 359.97438 * 26 25 24 47 47 H 1.08996 * 117.50002 * 145.01992 * 26 25 24 48 48 H 1.09004 * 117.49994 * 214.98029 * 27 25 24 49 49 H 1.08999 * 117.49971 * 0.02562 * 27 25 24 50 50 H 1.08001 * 125.89521 * 179.97438 * 28 24 23 51 51 H 1.08999 * 109.59165 * 173.14830 * 30 18 17 52 52 H 1.09002 * 109.59055 * 293.57223 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5091 8 7 2.9235 -1.9396 -3.4502 9 14 2.7893 0.2693 -5.1185 10 1 2.3756 1.6818 -4.9211 11 1 4.2061 0.2262 -5.5614 12 1 1.9283 -0.3594 -6.1521 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7219 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0671 -0.7009 3.7493 17 6 1.5544 -2.1441 3.7808 18 7 1.9161 -2.8020 2.5178 19 6 2.5922 -3.9678 2.5200 20 8 2.8845 -4.5013 1.4707 21 6 2.9851 -4.6087 3.8261 22 7 3.7052 -5.8567 3.5607 23 6 4.9327 -6.1780 4.0199 24 6 5.2362 -7.4126 3.5566 25 6 6.5096 -8.1723 3.8256 26 6 6.7383 -9.4673 3.0438 27 6 6.3900 -9.5239 4.5325 28 6 4.1594 -7.8589 2.7835 29 7 3.2421 -6.9260 2.7832 30 6 1.5318 -2.1618 1.2525 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1524 35 1 3.2469 -2.3970 -4.2421 36 1 0.4403 -0.0208 2.5113 37 1 1.8735 1.0343 2.4869 38 1 1.7227 -0.1729 4.6386 39 1 3.1569 -0.7022 3.7262 40 1 0.4705 -2.1444 3.8958 41 1 2.0125 -2.6764 4.6144 42 1 2.0896 -4.8226 4.4097 43 1 3.6292 -3.9297 4.3848 44 1 5.5587 -5.5621 4.6486 45 1 7.3827 -7.5607 4.0533 46 1 5.9674 -9.7701 2.3351 47 1 7.7619 -9.7079 2.7568 48 1 7.1846 -9.8017 5.2251 49 1 5.3902 -9.8638 4.8027 50 1 4.0961 -8.8095 2.2748 51 1 1.9749 -2.7058 0.4183 52 1 0.4460 -2.1636 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667333703.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:58 Heat of formation + Delta-G solvation = 86.468978 kcal Electronic energy + Delta-G solvation = -30685.379695 eV Core-core repulsion = 26688.001154 eV Total energy + Delta-G solvation = -3997.378542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40610 -40.13061 -37.94839 -37.10933 -35.48557 -33.38048 -32.82454 -31.90028 -30.26356 -29.86112 -28.26033 -27.40894 -25.22860 -24.31958 -23.21166 -23.02077 -22.54349 -21.59675 -21.03448 -20.12625 -19.12848 -18.57273 -17.56755 -17.13030 -16.91266 -15.90707 -15.68334 -15.43867 -14.87773 -14.80747 -14.50769 -14.33105 -14.25576 -13.91963 -13.73624 -13.52260 -13.30901 -12.99590 -12.84222 -12.72107 -12.51310 -12.40461 -12.09369 -11.90822 -11.68439 -11.57807 -11.20497 -11.01255 -11.00405 -10.85118 -10.64450 -10.61943 -10.46514 -10.39552 -10.24428 -10.22355 -9.97560 -9.80661 -9.52473 -9.29432 -8.87469 -8.49129 -8.27864 -6.91073 -5.69246 -2.99483 1.78431 2.28826 2.61196 2.69893 3.01567 3.46695 3.51379 3.54494 3.86593 4.16932 4.36489 4.55142 4.60561 4.65805 4.72259 4.75910 4.77433 4.82545 4.90921 4.94196 5.08960 5.19937 5.23979 5.29308 5.33328 5.47401 5.56425 5.60626 5.62763 5.71983 5.74253 5.79140 5.83354 5.92923 5.93412 5.96239 6.03949 6.10679 6.11473 6.24127 6.34586 6.39028 6.54259 6.59017 6.62842 6.75250 6.86882 6.89214 7.13320 7.41701 7.69168 7.75264 8.21759 8.47913 9.58778 10.16782 10.50424 11.52706 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.002623 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.671628 B =10671.442226 C =12863.458441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.105 3.895 18 N -0.610 5.610 19 C 0.495 3.505 20 O -0.497 6.497 21 C 0.119 3.881 22 N -0.361 5.361 23 C 0.058 3.942 24 C -0.205 4.205 25 C -0.071 4.071 26 C -0.176 4.176 27 C -0.178 4.178 28 C 0.046 3.954 29 N -0.259 5.259 30 C 0.118 3.882 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.172 0.828 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.179 0.821 51 H 0.101 0.899 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -6.893 24.962 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.576 5.576 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.018 4.018 18 N -0.346 5.346 19 C 0.279 3.721 20 O -0.369 6.369 21 C -0.007 4.007 22 N -0.143 5.143 23 C -0.087 4.087 24 C -0.217 4.217 25 C -0.091 4.091 26 C -0.213 4.213 27 C -0.215 4.215 28 C -0.141 4.141 29 N -0.079 5.079 30 C -0.003 4.003 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.189 0.811 45 H 0.126 0.874 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.196 0.804 51 H 0.119 0.881 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.964 -6.590 23.832 24.746 hybrid contribution 0.977 0.116 -0.642 1.175 sum 1.941 -6.475 23.190 24.155 Atomic orbital electron populations 1.22577 0.99528 1.00858 0.99971 1.20166 0.91837 0.95262 0.85757 0.93318 1.42529 1.78122 1.10820 1.05315 1.19250 1.36717 0.93835 0.87355 0.91201 1.24764 1.02215 0.95940 0.98035 1.69686 1.50608 1.08552 1.28748 0.86160 0.77278 0.78723 0.84273 1.20631 1.21947 1.21920 1.21701 1.00928 0.94298 0.95426 0.90975 1.21624 1.00968 0.99253 0.93444 1.21929 1.01388 0.94941 0.99015 1.21767 1.00627 0.93910 0.85484 1.48154 1.56615 1.21811 1.07992 1.20433 0.79199 0.81438 0.91028 1.90871 1.52300 1.61305 1.32444 1.21527 0.99155 0.83120 0.96857 1.47954 1.13464 1.13738 1.39174 1.22142 0.87936 0.97359 1.01260 1.19233 0.97957 0.96342 1.08148 1.20148 0.95268 0.88941 1.04710 1.22961 1.02664 1.01124 0.94570 1.23011 1.02758 1.00575 0.95145 1.23736 0.92037 0.98992 0.99364 1.77543 1.23263 0.94882 1.12178 1.21729 0.99969 0.93221 0.85366 0.92875 0.93322 0.94254 0.78049 0.93527 0.91327 0.91560 0.90830 0.91553 0.90984 0.90570 0.87100 0.86076 0.81077 0.87441 0.88625 0.88699 0.88929 0.88866 0.80436 0.88107 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.79 37.15 0.33 -2.63 16 2 C 0.18 3.50 2.72 -67.93 -0.18 3.31 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.43 5.04 -53.43 -0.27 -18.70 16 5 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.96 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 C -0.10 -1.65 2.31 -90.72 -0.21 -1.86 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.11 -1.31 4.78 -26.69 -0.13 -1.44 16 16 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 17 C 0.11 0.89 6.34 -3.71 -0.02 0.87 16 18 N -0.61 -8.14 2.98 -173.04 -0.52 -8.65 16 19 C 0.49 7.51 7.73 -10.99 -0.08 7.42 16 20 O -0.50 -10.56 15.11 5.56 0.08 -10.47 16 21 C 0.12 1.22 5.34 -5.19 -0.03 1.19 16 22 N -0.36 -4.74 3.40 -62.54 -0.21 -4.96 16 23 C 0.06 0.64 11.36 -17.23 -0.20 0.44 16 24 C -0.21 -2.37 5.76 -105.05 -0.61 -2.98 16 25 C -0.07 -0.65 6.25 -91.77 -0.57 -1.22 16 26 C -0.18 -1.45 10.02 -26.73 -0.27 -1.72 16 27 C -0.18 -1.35 10.23 -26.73 -0.27 -1.63 16 28 C 0.05 0.62 11.35 -17.36 -0.20 0.42 16 29 N -0.26 -4.14 11.63 30.63 0.36 -3.78 16 30 C 0.12 1.97 5.20 -3.94 -0.02 1.95 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 33 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 34 H 0.38 10.64 6.17 -40.82 -0.25 10.39 16 35 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 36 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.40 5.93 -51.93 -0.31 0.10 16 42 H 0.11 0.86 7.94 -51.93 -0.41 0.45 16 43 H 0.12 0.77 7.62 -51.93 -0.40 0.37 16 44 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.80 6.97 -51.93 -0.36 0.44 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.18 1.94 7.19 -52.49 -0.38 1.56 16 51 H 0.10 2.17 5.59 -51.93 -0.29 1.88 16 52 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -37.54 408.38 -9.91 -47.45 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.34 Total: 10.11 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.87 Total: -6.58 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.08 Total: -64.61 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.54 -9.91 -47.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667333703.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.915 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds