Wall clock time and date at job start Wed Apr 1 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47219 * 2 1 4 4 N 1.46499 * 109.46897 * 240.00314 * 2 1 3 5 5 C 1.36933 * 120.00393 * 85.00212 * 4 2 1 6 6 H 1.08006 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46993 * 120.00076 * 9 7 5 12 12 H 1.48500 * 109.46826 * 239.99589 * 9 7 5 13 13 C 1.52997 * 109.47188 * 120.00371 * 2 1 3 14 14 H 1.08993 * 109.49760 * 60.06012 * 13 2 1 15 15 C 1.53043 * 109.49522 * 299.99884 * 13 2 1 16 16 C 1.53037 * 109.54125 * 178.68226 * 15 13 2 17 17 C 1.53194 * 109.30871 * 61.36501 * 16 15 13 18 18 N 1.46928 * 108.77760 * 305.36680 * 17 16 15 19 19 C 1.34781 * 120.63015 * 233.33716 * 18 17 16 20 20 O 1.21597 * 119.99860 * 173.73029 * 19 18 17 21 21 C 1.47421 * 119.99949 * 353.72808 * 19 18 17 22 22 C 1.41291 * 126.41789 * 330.64581 * 21 19 18 23 23 N 1.30450 * 108.02440 * 179.85585 * 22 21 19 24 24 N 1.39925 * 108.89611 * 0.41083 * 23 22 21 25 25 C 1.46501 * 125.75539 * 179.73939 * 24 23 22 26 26 C 1.53000 * 109.46714 * 304.99835 * 25 24 23 27 27 C 1.53001 * 117.49471 * 243.61872 * 26 25 24 28 28 C 1.52999 * 60.00088 * 252.51128 * 27 26 25 29 29 C 1.34257 * 108.49607 * 359.73302 * 24 23 22 30 30 C 1.46924 * 118.73812 * 53.60835 * 18 17 16 31 31 H 1.09005 * 109.46913 * 60.00303 * 1 2 3 32 32 H 1.08997 * 109.47504 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47199 * 300.00280 * 1 2 3 34 34 H 0.97005 * 120.00055 * 264.99674 * 4 2 1 35 35 H 0.97005 * 119.99943 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.45924 * 58.65887 * 15 13 2 37 37 H 1.09005 * 109.46116 * 298.70720 * 15 13 2 38 38 H 1.08996 * 109.49689 * 301.41879 * 16 15 13 39 39 H 1.08991 * 109.52592 * 181.33026 * 16 15 13 40 40 H 1.08998 * 109.58557 * 185.57977 * 17 16 15 41 41 H 1.09000 * 109.70637 * 65.22375 * 17 16 15 42 42 H 1.08001 * 125.98712 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.47282 * 64.99565 * 25 24 23 44 44 H 1.08997 * 109.47237 * 184.99449 * 25 24 23 45 45 H 1.08998 * 115.55581 * 29.32573 * 26 25 24 46 46 H 1.08996 * 117.49991 * 0.02562 * 27 26 25 47 47 H 1.09002 * 117.49504 * 145.02345 * 27 26 25 48 48 H 1.09002 * 117.50146 * 252.50948 * 28 27 26 49 49 H 1.09003 * 117.51520 * 107.48312 * 28 27 26 50 50 H 1.07997 * 126.29795 * 179.97438 * 29 24 23 51 51 H 1.09004 * 109.58573 * 66.17836 * 30 18 17 52 52 H 1.09000 * 109.58771 * 186.60473 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6123 -0.6617 -3.5091 8 7 2.9262 -1.9385 -3.4498 9 14 2.7900 0.2702 -5.1183 10 1 2.3752 1.6823 -4.9211 11 1 4.2070 0.2282 -5.5607 12 1 1.9298 -0.3593 -6.1523 13 6 2.0400 -0.7213 1.2492 14 1 1.6778 -1.7493 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0125 -0.7399 3.7492 17 6 3.5441 -0.7370 3.7801 18 7 4.0438 -1.2971 2.5170 19 6 4.9226 -2.3190 2.5191 20 8 5.2414 -2.8488 1.4720 21 6 5.4973 -2.7944 3.7907 22 6 5.7219 -2.0202 4.9511 23 7 6.2387 -2.7983 5.8617 24 7 6.3764 -4.0862 5.3322 25 6 6.9234 -5.2478 6.0377 26 6 8.3181 -4.9113 6.5691 27 6 9.4982 -5.7089 6.0104 28 6 9.0140 -5.9593 7.4400 29 6 5.9226 -4.0780 4.0687 30 6 3.5719 -0.7181 1.2518 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6317 -1.1527 35 1 3.2502 -2.3955 -4.2417 36 1 0.4404 0.0204 2.4873 37 1 1.9125 1.0204 2.5110 38 1 1.6511 -1.7680 3.7257 39 1 1.6297 -0.2399 4.6387 40 1 3.8939 -1.3460 4.6136 41 1 3.9074 0.2842 3.8960 42 1 5.5014 -0.9691 5.0652 43 1 6.2702 -5.5077 6.8707 44 1 6.9899 -6.0917 5.3511 45 1 8.4888 -3.8623 6.8109 46 1 9.2810 -6.4730 5.2640 47 1 10.4455 -5.1846 5.8845 48 1 9.6427 -5.5997 8.2546 49 1 8.4780 -6.8883 7.6347 50 1 5.8955 -4.9205 3.3937 51 1 3.9353 0.3055 1.1604 52 1 3.9400 -1.3147 0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667347477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:51 Heat of formation + Delta-G solvation = 83.020645 kcal Electronic energy + Delta-G solvation = -30584.391949 eV Core-core repulsion = 26586.863877 eV Total energy + Delta-G solvation = -3997.528073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.62938 -39.64969 -38.01079 -37.45678 -35.36690 -33.41077 -32.68582 -31.65429 -30.60255 -29.76060 -28.29893 -27.38597 -25.41562 -24.01037 -23.06054 -22.90323 -22.34631 -21.89326 -20.84520 -20.52319 -19.49296 -19.04242 -17.62075 -17.01700 -16.47842 -15.91458 -15.77340 -15.34411 -14.95184 -14.78182 -14.65268 -14.25167 -14.20931 -13.83163 -13.61967 -13.50850 -13.25018 -13.03131 -12.88688 -12.68312 -12.55747 -12.23110 -12.17360 -12.04451 -11.89825 -11.25120 -11.18386 -11.02281 -10.96138 -10.89207 -10.80191 -10.64056 -10.61486 -10.46684 -10.17191 -10.05795 -9.77463 -9.70448 -9.53167 -9.43756 -8.82697 -8.77673 -8.25657 -6.84614 -5.65040 -2.93960 1.46499 2.04817 2.11600 3.20718 3.25956 3.49912 3.52923 3.54907 3.57602 3.89001 4.27839 4.39016 4.47097 4.59012 4.65858 4.67776 4.84203 4.88831 4.92827 4.96222 5.04524 5.13020 5.16958 5.31721 5.34278 5.37967 5.46435 5.50452 5.58590 5.60986 5.67157 5.68216 5.80539 5.89888 5.91016 6.02965 6.10596 6.21489 6.23181 6.29563 6.30948 6.52069 6.58941 6.61592 6.63813 6.82538 6.90487 7.00601 7.18403 7.35385 7.73818 7.80038 8.52546 8.53755 9.63716 10.22461 10.56842 11.57207 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002322 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.546902 B =12058.014047 C =13554.686326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.096 3.904 18 N -0.606 5.606 19 C 0.588 3.412 20 O -0.535 6.535 21 C -0.282 4.282 22 C 0.075 3.925 23 N -0.297 5.297 24 N -0.360 5.360 25 C 0.163 3.837 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 C 0.121 3.879 30 C 0.125 3.875 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.193 0.807 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.186 0.814 51 H 0.063 0.937 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -4.853 26.300 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.221 1.221 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.027 4.027 18 N -0.339 5.339 19 C 0.376 3.624 20 O -0.412 6.412 21 C -0.296 4.296 22 C -0.112 4.112 23 N -0.117 5.117 24 N -0.139 5.139 25 C 0.042 3.958 26 C -0.190 4.190 27 C -0.214 4.214 28 C -0.207 4.207 29 C -0.029 4.029 30 C 0.003 3.997 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.210 0.790 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.203 0.797 51 H 0.081 0.919 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.257 -5.213 26.859 28.307 hybrid contribution -0.220 0.250 -1.761 1.792 sum 7.037 -4.963 25.099 26.535 Atomic orbital electron populations 1.22479 0.99403 1.00750 0.99804 1.20178 0.91762 0.95256 0.85881 0.93558 1.42461 1.78026 1.10780 1.05264 1.19241 1.36398 0.93785 0.87348 0.91261 1.24736 1.02346 0.95946 0.97954 1.69682 1.50764 1.08607 1.28616 0.86180 0.77256 0.78753 0.84372 1.20661 1.21968 1.22054 1.21747 0.94877 1.00432 0.95181 0.91235 1.21628 1.00928 0.99027 0.93672 1.21906 0.95089 1.01457 0.98640 1.22091 0.94761 0.98976 0.86870 1.47945 1.43936 1.34402 1.07637 1.17300 0.78529 0.79302 0.87248 1.90847 1.61083 1.56384 1.32883 1.20325 1.17413 0.94433 0.97473 1.24240 0.96703 1.00126 0.90150 1.77108 1.23153 0.88483 1.22929 1.48411 1.47065 1.08699 1.09727 1.21372 0.93365 0.83821 0.97208 1.22559 0.92034 0.99164 1.05256 1.23129 0.98550 1.02884 0.96861 1.22979 1.03377 0.99867 0.94450 1.22949 0.94308 0.99097 0.86574 1.21681 0.93789 0.98746 0.85447 0.92962 0.93655 0.94312 0.78150 0.93643 0.91355 0.91918 0.91708 0.91161 0.89207 0.91570 0.79010 0.88907 0.88161 0.86313 0.88362 0.88445 0.88270 0.88364 0.79724 0.91873 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.14 37.16 0.34 -2.62 16 2 C 0.18 3.53 2.47 -67.93 -0.17 3.36 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -18.27 4.52 -53.43 -0.24 -18.51 16 5 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 9 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.10 -1.70 1.97 -90.50 -0.18 -1.87 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.44 4.85 -26.69 -0.13 -1.57 16 16 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 17 C 0.10 1.04 5.19 -3.71 -0.02 1.02 16 18 N -0.61 -9.10 2.97 -174.04 -0.52 -9.62 16 19 C 0.59 9.83 7.62 -12.52 -0.10 9.74 16 20 O -0.54 -11.46 16.44 5.28 0.09 -11.37 16 21 C -0.28 -3.70 5.54 -105.07 -0.58 -4.28 16 22 C 0.07 0.82 9.58 -16.98 -0.16 0.66 16 23 N -0.30 -3.34 12.14 30.86 0.37 -2.96 16 24 N -0.36 -3.55 3.65 -60.81 -0.22 -3.77 16 25 C 0.16 1.05 6.77 -4.04 -0.03 1.02 16 26 C -0.17 -1.13 5.92 -90.62 -0.54 -1.66 16 27 C -0.18 -1.01 10.18 -26.73 -0.27 -1.29 16 28 C -0.17 -0.81 10.25 -26.73 -0.27 -1.09 16 29 C 0.12 1.36 11.36 -16.56 -0.19 1.17 16 30 C 0.12 2.21 5.48 -3.71 -0.02 2.19 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 34 H 0.38 10.59 7.62 -40.82 -0.31 10.28 16 35 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.85 4.21 -51.93 -0.22 0.64 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.19 1.63 6.46 -52.49 -0.34 1.29 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.44 7.79 -51.93 -0.40 0.03 16 45 H 0.12 1.01 7.90 -51.93 -0.41 0.60 16 46 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.19 1.75 8.06 -52.49 -0.42 1.32 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.11 2.40 6.51 -51.93 -0.34 2.06 16 LS Contribution 412.77 15.07 6.22 6.22 Total: -1.00 -35.14 412.77 -9.88 -45.02 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.56 Total: 9.33 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.72 Total: -4.05 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.12 Total: -63.08 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.14 -9.88 -45.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667347477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.043 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds