Wall clock time and date at job start Wed Apr 1 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47219 * 2 1 4 4 N 1.46499 * 109.46897 * 240.00314 * 2 1 3 5 5 C 1.36933 * 120.00393 * 85.00212 * 4 2 1 6 6 H 1.08006 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46993 * 120.00076 * 9 7 5 12 12 H 1.48500 * 109.46826 * 239.99589 * 9 7 5 13 13 C 1.52997 * 109.47188 * 120.00371 * 2 1 3 14 14 H 1.08993 * 109.49760 * 60.06012 * 13 2 1 15 15 C 1.53043 * 109.49522 * 299.99884 * 13 2 1 16 16 C 1.53037 * 109.54125 * 178.68226 * 15 13 2 17 17 C 1.53194 * 109.30871 * 61.36501 * 16 15 13 18 18 N 1.46928 * 108.77760 * 305.36680 * 17 16 15 19 19 C 1.34781 * 120.63015 * 233.33716 * 18 17 16 20 20 O 1.21597 * 119.99860 * 173.73029 * 19 18 17 21 21 C 1.47421 * 119.99949 * 353.72808 * 19 18 17 22 22 C 1.41291 * 126.41789 * 330.64581 * 21 19 18 23 23 N 1.30450 * 108.02440 * 179.85585 * 22 21 19 24 24 N 1.39925 * 108.89611 * 0.41083 * 23 22 21 25 25 C 1.46501 * 125.75539 * 179.73939 * 24 23 22 26 26 C 1.53000 * 109.46714 * 304.99835 * 25 24 23 27 27 C 1.53001 * 117.49471 * 243.61872 * 26 25 24 28 28 C 1.52999 * 60.00088 * 252.51128 * 27 26 25 29 29 C 1.34257 * 108.49607 * 359.73302 * 24 23 22 30 30 C 1.46924 * 118.73812 * 53.60835 * 18 17 16 31 31 H 1.09005 * 109.46913 * 60.00303 * 1 2 3 32 32 H 1.08997 * 109.47504 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47199 * 300.00280 * 1 2 3 34 34 H 0.97005 * 120.00055 * 264.99674 * 4 2 1 35 35 H 0.97005 * 119.99943 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.45924 * 58.65887 * 15 13 2 37 37 H 1.09005 * 109.46116 * 298.70720 * 15 13 2 38 38 H 1.08996 * 109.49689 * 301.41879 * 16 15 13 39 39 H 1.08991 * 109.52592 * 181.33026 * 16 15 13 40 40 H 1.08998 * 109.58557 * 185.57977 * 17 16 15 41 41 H 1.09000 * 109.70637 * 65.22375 * 17 16 15 42 42 H 1.08001 * 125.98712 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.47282 * 64.99565 * 25 24 23 44 44 H 1.08997 * 109.47237 * 184.99449 * 25 24 23 45 45 H 1.08998 * 115.55581 * 29.32573 * 26 25 24 46 46 H 1.08996 * 117.49991 * 0.02562 * 27 26 25 47 47 H 1.09002 * 117.49504 * 145.02345 * 27 26 25 48 48 H 1.09002 * 117.50146 * 252.50948 * 28 27 26 49 49 H 1.09003 * 117.51520 * 107.48312 * 28 27 26 50 50 H 1.07997 * 126.29795 * 179.97438 * 29 24 23 51 51 H 1.09004 * 109.58573 * 66.17836 * 30 18 17 52 52 H 1.09000 * 109.58771 * 186.60473 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6123 -0.6617 -3.5091 8 7 2.9262 -1.9385 -3.4498 9 14 2.7900 0.2702 -5.1183 10 1 2.3752 1.6823 -4.9211 11 1 4.2070 0.2282 -5.5607 12 1 1.9298 -0.3593 -6.1523 13 6 2.0400 -0.7213 1.2492 14 1 1.6778 -1.7493 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0125 -0.7399 3.7492 17 6 3.5441 -0.7370 3.7801 18 7 4.0438 -1.2971 2.5170 19 6 4.9226 -2.3190 2.5191 20 8 5.2414 -2.8488 1.4720 21 6 5.4973 -2.7944 3.7907 22 6 5.7219 -2.0202 4.9511 23 7 6.2387 -2.7983 5.8617 24 7 6.3764 -4.0862 5.3322 25 6 6.9234 -5.2478 6.0377 26 6 8.3181 -4.9113 6.5691 27 6 9.4982 -5.7089 6.0104 28 6 9.0140 -5.9593 7.4400 29 6 5.9226 -4.0780 4.0687 30 6 3.5719 -0.7181 1.2518 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6317 -1.1527 35 1 3.2502 -2.3955 -4.2417 36 1 0.4404 0.0204 2.4873 37 1 1.9125 1.0204 2.5110 38 1 1.6511 -1.7680 3.7257 39 1 1.6297 -0.2399 4.6387 40 1 3.8939 -1.3460 4.6136 41 1 3.9074 0.2842 3.8960 42 1 5.5014 -0.9691 5.0652 43 1 6.2702 -5.5077 6.8707 44 1 6.9899 -6.0917 5.3511 45 1 8.4888 -3.8623 6.8109 46 1 9.2810 -6.4730 5.2640 47 1 10.4455 -5.1846 5.8845 48 1 9.6427 -5.5997 8.2546 49 1 8.4780 -6.8883 7.6347 50 1 5.8955 -4.9205 3.3937 51 1 3.9353 0.3055 1.1604 52 1 3.9400 -1.3147 0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667347477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:49 Heat of formation + Delta-G solvation = 60.860975 kcal Electronic energy + Delta-G solvation = -30585.352865 eV Core-core repulsion = 26586.863877 eV Total energy + Delta-G solvation = -3998.488988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.52112 -40.84918 -38.93437 -38.42337 -36.92200 -34.73405 -33.89901 -33.04870 -31.72163 -31.13212 -29.86577 -28.21433 -26.66118 -25.77730 -24.41684 -23.38498 -23.26030 -22.69914 -22.01152 -21.28018 -20.96287 -20.09105 -19.11754 -18.48708 -17.44495 -16.93189 -16.72228 -16.65886 -16.20162 -16.02949 -15.57255 -15.48155 -15.32055 -15.15360 -14.80349 -14.68526 -14.31921 -14.15315 -13.99602 -13.93952 -13.86757 -13.60025 -13.28432 -12.98630 -12.80617 -12.74249 -12.49141 -12.42155 -12.31345 -12.09157 -12.04653 -11.95189 -11.76966 -11.63037 -11.43581 -11.30742 -11.15016 -11.06946 -10.94892 -10.78372 -10.50487 -9.78873 -9.43739 -8.95525 -7.89146 -5.17361 0.54427 1.14841 1.33996 1.45774 1.47548 1.57112 2.05981 2.35822 2.58211 2.80573 3.29354 3.44099 3.65766 3.78174 3.79344 3.86983 3.91740 3.97982 4.00606 4.03760 4.16374 4.18427 4.23120 4.28456 4.37496 4.49005 4.50019 4.60973 4.64182 4.66070 4.70753 4.76101 4.84237 4.90609 4.97797 4.98353 5.00277 5.08026 5.10667 5.16359 5.20718 5.21538 5.32155 5.37675 5.43221 5.53232 5.59830 5.63461 5.69799 5.84337 6.32052 6.48172 6.56497 7.27828 7.37003 8.15819 8.37379 9.34682 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002322 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.546902 B =12058.014047 C =13554.686326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 H 0.049 0.951 4 N -0.737 5.737 5 C -0.229 4.229 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.298 1.298 12 H -0.296 1.296 13 C -0.089 4.089 14 H 0.047 0.953 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.090 3.910 18 N -0.603 5.603 19 C 0.582 3.418 20 O -0.600 6.600 21 C -0.307 4.307 22 C 0.083 3.917 23 N -0.308 5.308 24 N -0.351 5.351 25 C 0.156 3.844 26 C -0.183 4.183 27 C -0.184 4.184 28 C -0.153 4.153 29 C 0.124 3.876 30 C 0.132 3.868 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.367 0.633 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.218 0.782 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.116 0.884 50 H 0.197 0.803 51 H 0.067 0.933 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -3.572 29.617 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 H 0.067 0.933 4 N -0.377 5.377 5 C -0.361 4.361 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.186 1.186 11 H -0.226 1.226 12 H -0.223 1.223 13 C -0.109 4.109 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.165 4.165 17 C -0.031 4.031 18 N -0.334 5.334 19 C 0.372 3.628 20 O -0.481 6.481 21 C -0.322 4.322 22 C -0.103 4.103 23 N -0.128 5.128 24 N -0.129 5.129 25 C 0.036 3.964 26 C -0.202 4.202 27 C -0.221 4.221 28 C -0.190 4.190 29 C -0.028 4.028 30 C 0.010 3.990 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.234 0.766 43 H 0.127 0.873 44 H 0.141 0.859 45 H 0.115 0.885 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.121 0.879 49 H 0.134 0.866 50 H 0.214 0.786 51 H 0.085 0.915 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.488 -3.867 30.281 31.209 hybrid contribution 0.038 -0.158 -2.662 2.667 sum 6.526 -4.025 27.619 28.664 Atomic orbital electron populations 1.22319 0.97459 1.00491 1.01015 1.20490 0.92970 0.95056 0.85142 0.93301 1.42702 1.78308 1.10151 1.06500 1.19665 1.34074 0.94134 0.88220 0.90348 1.25578 1.03495 0.96864 1.01595 1.69869 1.52983 1.10443 1.29065 0.85112 0.76519 0.78370 0.80049 1.18599 1.22605 1.22323 1.21588 0.93785 0.99428 0.96111 0.93479 1.21617 1.01635 0.99371 0.91965 1.21905 0.94512 1.01014 0.99033 1.22466 0.95212 1.00454 0.84953 1.48009 1.43257 1.33867 1.08239 1.17877 0.78205 0.78960 0.87717 1.90808 1.63382 1.58604 1.35355 1.20102 1.19556 0.95839 0.96676 1.24533 0.95906 1.01043 0.88844 1.77095 1.23332 0.89113 1.23232 1.48689 1.45881 1.09104 1.09223 1.21748 0.93372 0.83172 0.98074 1.22446 0.92400 0.98505 1.06859 1.23204 0.97973 1.02936 0.98007 1.23072 1.02398 0.99662 0.93865 1.23176 0.93345 0.99023 0.87235 1.21330 0.94659 0.97685 0.85367 0.94711 0.94651 0.90040 0.80143 0.94427 0.90065 0.90321 0.92863 0.87197 0.87506 0.88919 0.76623 0.87324 0.85931 0.88490 0.87543 0.89068 0.87921 0.86612 0.78596 0.91514 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.14 71.98 0.66 -4.67 16 2 C 0.17 6.76 2.47 44.99 0.11 6.87 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.74 -38.68 4.52 -322.94 -1.46 -40.14 16 5 C -0.23 -13.11 9.93 84.03 0.83 -12.28 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 8 N -0.97 -63.55 13.06 21.65 0.28 -63.27 16 9 Si 0.97 48.41 29.55 68.60 2.03 50.44 16 10 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 13 C -0.09 -2.95 1.97 -10.72 -0.02 -2.97 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.37 4.85 30.62 0.15 -2.22 16 16 C -0.13 -2.21 6.08 30.67 0.19 -2.02 16 17 C 0.09 1.69 5.19 86.36 0.45 2.14 16 18 N -0.60 -18.18 2.97 -822.79 -2.45 -20.63 16 19 C 0.58 20.29 7.62 86.66 0.66 20.95 16 20 O -0.60 -27.82 16.44 -4.02 -0.07 -27.88 16 21 C -0.31 -7.99 5.54 -20.15 -0.11 -8.10 16 22 C 0.08 1.69 9.58 85.65 0.82 2.51 16 23 N -0.31 -6.39 12.14 -56.27 -0.68 -7.07 16 24 N -0.35 -6.42 3.65 -346.30 -1.26 -7.68 16 25 C 0.16 1.68 6.77 86.38 0.58 2.27 16 26 C -0.18 -2.16 5.92 -10.79 -0.06 -2.22 16 27 C -0.18 -1.87 10.18 30.59 0.31 -1.56 16 28 C -0.15 -1.15 10.25 30.59 0.31 -0.83 16 29 C 0.12 2.74 11.36 84.28 0.96 3.70 16 30 C 0.13 4.88 5.48 86.36 0.47 5.36 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 2.13 6.40 -2.39 -0.02 2.12 16 34 H 0.37 21.60 7.62 -92.70 -0.71 20.89 16 35 H 0.25 15.70 8.31 -92.70 -0.77 14.93 16 36 H 0.08 1.61 6.36 -2.39 -0.02 1.60 16 37 H 0.08 1.53 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.70 4.21 -2.39 -0.01 1.69 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.22 3.03 6.46 -2.91 -0.02 3.01 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.12 0.77 7.79 -2.39 -0.02 0.76 16 45 H 0.10 1.60 7.90 -2.39 -0.02 1.58 16 46 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 49 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 51 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 52 H 0.05 2.42 6.51 -2.39 -0.02 2.40 16 Total: -1.00 -82.69 412.77 3.38 -79.31 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.21 Total: 34.60 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.78 Total: 2.33 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -5.57 Total: -138.79 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -82.69 3.38 -79.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667347477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.167 kcal (2) G-P(sol) polarization free energy of solvation -82.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds