Wall clock time and date at job start Wed Apr 1 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47493 * 2 1 4 4 N 1.46504 * 109.47432 * 239.99671 * 2 1 3 5 5 C 1.36935 * 119.99882 * 73.29916 * 4 2 1 6 6 H 1.08000 * 119.99722 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00040 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99865 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46922 * 89.99729 * 9 7 5 11 11 H 1.48499 * 109.47276 * 209.99813 * 9 7 5 12 12 H 1.48498 * 109.47148 * 330.00209 * 9 7 5 13 13 C 1.53001 * 109.46880 * 119.99930 * 2 1 3 14 14 H 1.09007 * 109.58485 * 70.31564 * 13 2 1 15 15 C 1.53186 * 109.58874 * 310.03079 * 13 2 1 16 16 C 1.53035 * 109.31597 * 185.57424 * 15 13 2 17 17 C 1.53044 * 109.53649 * 61.36545 * 16 15 13 18 18 C 1.53189 * 109.31181 * 298.63403 * 17 16 15 19 19 N 1.46922 * 109.59031 * 190.73797 * 13 2 1 20 20 C 1.34775 * 120.62761 * 353.40090 * 19 13 2 21 21 O 1.21603 * 120.00388 * 6.31201 * 20 19 13 22 22 C 1.47433 * 119.99915 * 186.31441 * 20 19 13 23 23 C 1.41283 * 126.41487 * 33.66012 * 22 20 19 24 24 N 1.30454 * 108.02392 * 179.97438 * 23 22 20 25 25 N 1.39934 * 108.89261 * 0.02562 * 24 23 22 26 26 C 1.46508 * 125.74988 * 180.02562 * 25 24 23 27 27 C 1.53782 * 113.61127 * 194.10716 * 26 25 24 28 28 C 1.53954 * 87.01790 * 220.04863 * 27 26 25 29 29 C 1.53782 * 87.11420 * 25.36387 * 28 27 26 30 30 C 1.34260 * 108.49454 * 359.74374 * 25 24 23 31 31 H 1.09008 * 109.46837 * 60.00015 * 1 2 3 32 32 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47322 * 300.00462 * 1 2 3 34 34 H 0.96993 * 120.00341 * 253.30523 * 4 2 1 35 35 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.49996 * 305.53171 * 15 13 2 37 37 H 1.09005 * 109.49904 * 65.62076 * 15 13 2 38 38 H 1.09004 * 109.46098 * 181.38377 * 16 15 13 39 39 H 1.09000 * 109.46474 * 301.34276 * 16 15 13 40 40 H 1.09006 * 109.49467 * 58.58948 * 17 16 15 41 41 H 1.09001 * 109.49855 * 178.67883 * 17 16 15 42 42 H 1.09003 * 109.58460 * 174.42005 * 18 17 16 43 43 H 1.08994 * 109.58523 * 294.84853 * 18 17 16 44 44 H 1.08000 * 125.99274 * 359.97438 * 23 22 20 45 45 H 1.08994 * 112.85095 * 325.30580 * 26 25 24 46 46 H 1.08997 * 113.61416 * 334.56301 * 27 26 25 47 47 H 1.09001 * 113.61256 * 105.47313 * 27 26 25 48 48 H 1.09004 * 113.54032 * 270.81173 * 28 27 26 49 49 H 1.09002 * 113.74645 * 139.94856 * 28 27 26 50 50 H 1.09000 * 113.61358 * 220.09009 * 29 28 27 51 51 H 1.08999 * 113.68891 * 89.19390 * 29 28 27 52 52 H 1.07995 * 126.28875 * 180.25166 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.9253 -0.0866 -2.4215 6 1 1.4922 0.8991 -2.5061 7 6 2.3886 -0.7407 -3.5548 8 7 2.2996 -0.1599 -4.7325 9 14 3.1382 -2.4454 -3.4084 10 1 2.0726 -3.4691 -3.5561 11 1 4.1553 -2.6322 -4.4742 12 1 3.7827 -2.5902 -2.0784 13 6 2.0399 -0.7213 1.2493 14 1 1.8355 -1.7886 1.1640 15 6 1.3359 -0.1610 2.4891 16 6 1.9481 -0.7861 3.7446 17 6 3.4323 -0.4219 3.8261 18 6 4.1601 -0.9851 2.6014 19 7 3.4863 -0.5035 1.3879 20 6 4.1817 0.1262 0.4203 21 8 3.5975 0.6212 -0.5244 22 6 5.6508 0.2149 0.5071 23 6 6.5185 -0.7551 1.0569 24 7 7.7405 -0.3115 0.9481 25 7 7.7133 0.9451 0.3331 26 6 8.8818 1.7755 0.0304 27 6 8.5287 3.2292 -0.3259 28 6 9.6206 3.1444 -1.4080 29 6 9.3873 1.6244 -1.4141 30 6 6.4364 1.2588 0.0615 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.4076 -1.5758 -1.1201 35 1 2.6229 -0.6171 -5.5245 36 1 1.4634 0.9209 2.5221 37 1 0.2736 -0.4013 2.4440 38 1 1.4323 -0.4076 4.6272 39 1 1.8421 -1.8700 3.6994 40 1 3.5401 0.6626 3.8466 41 1 3.8622 -0.8478 4.7326 42 1 5.1958 -0.6453 2.6036 43 1 4.1307 -2.0744 2.6279 44 1 6.2222 -1.6985 1.4912 45 1 9.6685 1.6883 0.7797 46 1 7.5230 3.3480 -0.7290 47 1 8.7544 3.9406 0.4685 48 1 10.6097 3.4329 -1.0520 49 1 9.3492 3.6316 -2.3445 50 1 10.3051 1.0421 -1.4968 51 1 8.6171 1.3023 -2.1148 52 1 6.0879 2.1627 -0.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689903289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:45 Heat of formation + Delta-G solvation = 125.409889 kcal Electronic energy + Delta-G solvation = -32627.841737 eV Core-core repulsion = 28632.151799 eV Total energy + Delta-G solvation = -3995.689937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.47998 -39.94013 -38.58594 -36.75035 -35.28850 -32.77094 -32.13474 -31.54229 -30.16184 -30.01020 -28.09071 -26.19307 -25.90349 -24.89980 -24.18051 -22.57919 -22.15454 -21.27917 -20.50733 -19.85465 -19.42188 -19.06929 -17.69190 -16.92089 -16.09765 -15.78248 -15.52607 -15.12099 -14.78193 -14.71931 -14.37033 -14.16127 -13.87017 -13.68055 -13.53788 -13.09657 -13.02017 -12.93547 -12.67568 -12.51717 -12.38690 -12.26723 -12.16894 -12.07028 -11.65166 -11.36306 -11.32518 -11.04729 -11.01495 -10.87392 -10.82565 -10.72967 -10.64353 -10.58481 -10.35565 -10.03966 -9.74202 -9.39447 -9.27625 -8.67866 -8.49676 -8.12094 -7.99339 -6.75888 -5.44368 -2.71477 1.79666 2.37627 2.46614 3.45873 3.54915 3.58689 3.61447 3.88631 3.93609 4.13858 4.40858 4.43302 4.71300 4.83243 4.87316 4.87565 4.92369 4.95237 5.15602 5.16931 5.25882 5.34241 5.36273 5.43402 5.47135 5.51427 5.56340 5.59788 5.62606 5.71284 5.75261 5.80676 5.83164 5.87255 5.90844 5.97820 6.04737 6.10663 6.10854 6.13893 6.37650 6.46394 6.47293 6.56143 6.66625 6.95582 6.98506 7.10797 7.42895 7.67741 8.03397 8.31931 8.73459 9.06194 9.54148 10.27534 10.48418 11.76332 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.004906 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.510614 B = 5705.464562 C = 7943.051400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.184 3.816 3 H 0.075 0.925 4 N -0.724 5.724 5 C -0.181 4.181 6 H 0.085 0.915 7 C -0.010 4.010 8 N -0.950 5.950 9 Si 0.877 3.123 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.282 1.282 13 C 0.146 3.854 14 H 0.062 0.938 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.613 5.613 20 C 0.557 3.443 21 O -0.445 6.445 22 C -0.270 4.270 23 C 0.070 3.930 24 N -0.304 5.304 25 N -0.354 5.354 26 C 0.134 3.866 27 C -0.147 4.147 28 C -0.137 4.137 29 C -0.149 4.149 30 C 0.114 3.886 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.353 0.647 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.186 0.814 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 3.956 18.941 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.075 3.925 3 H 0.093 0.907 4 N -0.366 5.366 5 C -0.312 4.312 6 H 0.103 0.897 7 C -0.202 4.202 8 N -0.602 5.602 9 Si 0.710 3.290 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.209 1.209 13 C 0.043 3.957 14 H 0.080 0.920 15 C -0.166 4.166 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.020 4.020 19 N -0.350 5.350 20 C 0.342 3.658 21 O -0.314 6.314 22 C -0.285 4.285 23 C -0.117 4.117 24 N -0.124 5.124 25 N -0.134 5.134 26 C 0.033 3.967 27 C -0.186 4.186 28 C -0.175 4.175 29 C -0.188 4.188 30 C -0.035 4.035 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.185 0.815 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.203 0.797 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.111 0.889 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.183 4.238 18.409 22.478 hybrid contribution -0.123 -1.414 -0.124 1.425 sum 12.060 2.823 18.284 22.085 Atomic orbital electron populations 1.22562 0.99460 1.00592 1.00391 1.20487 0.90427 0.97620 0.83961 0.90736 1.42671 1.73034 1.17380 1.03528 1.18896 1.29841 1.00287 0.82171 0.89696 1.24494 1.02578 0.97657 0.95511 1.69683 1.55039 1.37870 0.97564 0.86609 0.79049 0.86949 0.76364 1.21901 1.22537 1.20911 1.21512 0.78965 0.99320 0.95940 0.91965 1.21999 0.99835 1.00908 0.93847 1.21523 0.95450 1.00706 0.97951 1.21905 0.96083 1.01512 0.97609 1.21878 0.97389 0.98305 0.84472 1.47687 1.07933 1.60380 1.18997 1.17387 0.84929 0.80979 0.82510 1.91209 1.67931 1.42245 1.29989 1.20501 0.95351 0.98026 1.14638 1.24094 0.89576 0.99667 0.98354 1.77068 1.21681 0.94854 1.18800 1.48468 1.05417 1.14392 1.45116 1.23061 0.86437 0.89305 0.97925 1.23475 1.01200 0.94169 0.99719 1.22726 0.98908 0.96066 0.99758 1.23469 1.02526 0.97207 0.95588 1.22750 0.83568 1.00087 0.97143 0.92239 0.93928 0.94187 0.81510 0.93840 0.91485 0.90560 0.92142 0.92046 0.91683 0.91429 0.89274 0.92263 0.79734 0.86005 0.88498 0.89816 0.89427 0.89900 0.90252 0.88862 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.70 37.15 0.32 -2.79 16 2 C 0.18 3.72 1.81 -67.93 -0.12 3.60 16 3 H 0.08 1.69 6.18 -51.93 -0.32 1.36 16 4 N -0.72 -18.06 3.09 -53.43 -0.17 -18.23 16 5 C -0.18 -5.38 8.83 -15.06 -0.13 -5.51 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.95 -31.67 13.97 55.49 0.78 -30.90 16 9 Si 0.88 24.16 27.74 -169.99 -4.71 19.45 16 10 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 11 H -0.30 -8.40 7.11 56.52 0.40 -8.00 16 12 H -0.28 -7.51 6.52 56.52 0.37 -7.14 16 13 C 0.15 2.35 2.58 -67.60 -0.17 2.17 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.13 -1.59 4.50 -26.62 -0.12 -1.71 16 16 C -0.12 -1.19 5.88 -26.69 -0.16 -1.35 16 17 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 18 C 0.10 1.20 5.28 -3.71 -0.02 1.19 16 19 N -0.61 -9.63 2.97 -166.48 -0.49 -10.13 16 20 C 0.56 10.50 7.31 -12.52 -0.09 10.41 16 21 O -0.44 -10.42 10.17 5.27 0.05 -10.36 16 22 C -0.27 -4.47 5.40 -105.07 -0.57 -5.04 16 23 C 0.07 1.02 9.57 -16.98 -0.16 0.86 16 24 N -0.30 -4.52 12.50 30.86 0.39 -4.13 16 25 N -0.35 -4.75 3.77 -53.52 -0.20 -4.95 16 26 C 0.13 1.31 5.01 -67.11 -0.34 0.97 16 27 C -0.15 -1.15 7.45 -25.83 -0.19 -1.34 16 28 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 29 C -0.15 -1.40 7.88 -25.92 -0.20 -1.61 16 30 C 0.11 1.70 10.64 -16.56 -0.18 1.52 16 31 H 0.06 1.23 7.98 -51.92 -0.41 0.82 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.60 6.45 -51.93 -0.33 0.27 16 34 H 0.35 8.95 5.57 -40.82 -0.23 8.72 16 35 H 0.25 8.08 8.31 -40.82 -0.34 7.74 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.90 6.70 -51.93 -0.35 0.55 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.01 4.46 -51.93 -0.23 0.78 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.19 2.25 6.84 -52.49 -0.36 1.89 16 45 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.10 0.84 6.29 -51.93 -0.33 0.52 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.18 2.47 6.66 -52.49 -0.35 2.12 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -37.02 392.94 -9.46 -46.48 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.42 Total: 8.52 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.60 Total: -1.66 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: 0.30 Total: -68.34 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.05 Total: -10.36 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.71 Total: 19.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.02 -9.46 -46.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689903289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.892 kcal (2) G-P(sol) polarization free energy of solvation -37.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds