Wall clock time and date at job start Wed Apr 1 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47493 * 2 1 4 4 N 1.46504 * 109.47432 * 239.99671 * 2 1 3 5 5 C 1.36935 * 119.99882 * 73.29916 * 4 2 1 6 6 H 1.08000 * 119.99722 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00040 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99865 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46922 * 89.99729 * 9 7 5 11 11 H 1.48499 * 109.47276 * 209.99813 * 9 7 5 12 12 H 1.48498 * 109.47148 * 330.00209 * 9 7 5 13 13 C 1.53001 * 109.46880 * 119.99930 * 2 1 3 14 14 H 1.09007 * 109.58485 * 70.31564 * 13 2 1 15 15 C 1.53186 * 109.58874 * 310.03079 * 13 2 1 16 16 C 1.53035 * 109.31597 * 185.57424 * 15 13 2 17 17 C 1.53044 * 109.53649 * 61.36545 * 16 15 13 18 18 C 1.53189 * 109.31181 * 298.63403 * 17 16 15 19 19 N 1.46922 * 109.59031 * 190.73797 * 13 2 1 20 20 C 1.34775 * 120.62761 * 353.40090 * 19 13 2 21 21 O 1.21603 * 120.00388 * 6.31201 * 20 19 13 22 22 C 1.47433 * 119.99915 * 186.31441 * 20 19 13 23 23 C 1.41283 * 126.41487 * 33.66012 * 22 20 19 24 24 N 1.30454 * 108.02392 * 179.97438 * 23 22 20 25 25 N 1.39934 * 108.89261 * 0.02562 * 24 23 22 26 26 C 1.46508 * 125.74988 * 180.02562 * 25 24 23 27 27 C 1.53782 * 113.61127 * 194.10716 * 26 25 24 28 28 C 1.53954 * 87.01790 * 220.04863 * 27 26 25 29 29 C 1.53782 * 87.11420 * 25.36387 * 28 27 26 30 30 C 1.34260 * 108.49454 * 359.74374 * 25 24 23 31 31 H 1.09008 * 109.46837 * 60.00015 * 1 2 3 32 32 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47322 * 300.00462 * 1 2 3 34 34 H 0.96993 * 120.00341 * 253.30523 * 4 2 1 35 35 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.49996 * 305.53171 * 15 13 2 37 37 H 1.09005 * 109.49904 * 65.62076 * 15 13 2 38 38 H 1.09004 * 109.46098 * 181.38377 * 16 15 13 39 39 H 1.09000 * 109.46474 * 301.34276 * 16 15 13 40 40 H 1.09006 * 109.49467 * 58.58948 * 17 16 15 41 41 H 1.09001 * 109.49855 * 178.67883 * 17 16 15 42 42 H 1.09003 * 109.58460 * 174.42005 * 18 17 16 43 43 H 1.08994 * 109.58523 * 294.84853 * 18 17 16 44 44 H 1.08000 * 125.99274 * 359.97438 * 23 22 20 45 45 H 1.08994 * 112.85095 * 325.30580 * 26 25 24 46 46 H 1.08997 * 113.61416 * 334.56301 * 27 26 25 47 47 H 1.09001 * 113.61256 * 105.47313 * 27 26 25 48 48 H 1.09004 * 113.54032 * 270.81173 * 28 27 26 49 49 H 1.09002 * 113.74645 * 139.94856 * 28 27 26 50 50 H 1.09000 * 113.61358 * 220.09009 * 29 28 27 51 51 H 1.08999 * 113.68891 * 89.19390 * 29 28 27 52 52 H 1.07995 * 126.28875 * 180.25166 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.9253 -0.0866 -2.4215 6 1 1.4922 0.8991 -2.5061 7 6 2.3886 -0.7407 -3.5548 8 7 2.2996 -0.1599 -4.7325 9 14 3.1382 -2.4454 -3.4084 10 1 2.0726 -3.4691 -3.5561 11 1 4.1553 -2.6322 -4.4742 12 1 3.7827 -2.5902 -2.0784 13 6 2.0399 -0.7213 1.2493 14 1 1.8355 -1.7886 1.1640 15 6 1.3359 -0.1610 2.4891 16 6 1.9481 -0.7861 3.7446 17 6 3.4323 -0.4219 3.8261 18 6 4.1601 -0.9851 2.6014 19 7 3.4863 -0.5035 1.3879 20 6 4.1817 0.1262 0.4203 21 8 3.5975 0.6212 -0.5244 22 6 5.6508 0.2149 0.5071 23 6 6.5185 -0.7551 1.0569 24 7 7.7405 -0.3115 0.9481 25 7 7.7133 0.9451 0.3331 26 6 8.8818 1.7755 0.0304 27 6 8.5287 3.2292 -0.3259 28 6 9.6206 3.1444 -1.4080 29 6 9.3873 1.6244 -1.4141 30 6 6.4364 1.2588 0.0615 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.4076 -1.5758 -1.1201 35 1 2.6229 -0.6171 -5.5245 36 1 1.4634 0.9209 2.5221 37 1 0.2736 -0.4013 2.4440 38 1 1.4323 -0.4076 4.6272 39 1 1.8421 -1.8700 3.6994 40 1 3.5401 0.6626 3.8466 41 1 3.8622 -0.8478 4.7326 42 1 5.1958 -0.6453 2.6036 43 1 4.1307 -2.0744 2.6279 44 1 6.2222 -1.6985 1.4912 45 1 9.6685 1.6883 0.7797 46 1 7.5230 3.3480 -0.7290 47 1 8.7544 3.9406 0.4685 48 1 10.6097 3.4329 -1.0520 49 1 9.3492 3.6316 -2.3445 50 1 10.3051 1.0421 -1.4968 51 1 8.6171 1.3023 -2.1148 52 1 6.0879 2.1627 -0.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689903289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:44 Heat of formation + Delta-G solvation = 101.100771 kcal Electronic energy + Delta-G solvation = -32628.895859 eV Core-core repulsion = 28632.151799 eV Total energy + Delta-G solvation = -3996.744059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.59259 -41.19943 -39.40842 -38.03192 -36.98955 -34.30525 -33.71307 -32.62965 -31.92272 -31.20616 -29.59929 -27.10707 -26.74310 -26.05419 -25.74570 -24.02046 -23.35084 -22.39143 -21.66174 -21.28420 -20.47032 -20.18057 -19.43397 -18.34196 -17.11080 -16.87229 -16.68157 -16.63485 -16.15048 -15.92246 -15.70860 -15.49573 -15.23601 -14.77393 -14.70587 -14.58256 -14.23970 -14.03697 -13.95439 -13.83109 -13.76227 -13.52347 -13.38967 -13.21385 -13.07887 -12.85909 -12.61285 -12.42405 -12.28620 -12.08977 -12.00684 -11.85217 -11.68125 -11.66172 -11.64536 -11.50647 -11.35636 -11.17383 -10.84989 -10.48014 -9.88476 -9.56279 -9.33417 -8.83738 -7.85608 -5.07790 0.62125 1.25539 1.30833 1.35977 1.38065 1.41684 2.24636 2.53024 2.57042 3.15897 3.43013 3.45951 3.63125 3.71028 3.74581 3.74984 3.77597 3.87763 4.01133 4.13041 4.23186 4.31461 4.35831 4.39769 4.41527 4.49376 4.59178 4.65000 4.67942 4.73429 4.78296 4.83093 4.87514 4.90508 4.91324 4.96788 4.99167 5.06338 5.11276 5.17614 5.23898 5.28713 5.31166 5.43407 5.47732 5.53343 5.62305 5.90102 5.92699 6.00194 6.36981 6.54202 6.74162 7.26131 7.67491 8.05244 8.23269 9.39118 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.004906 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.510614 B = 5705.464562 C = 7943.051400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.722 5.722 5 C -0.148 4.148 6 H 0.044 0.956 7 C -0.085 4.085 8 N -1.001 6.001 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.308 1.308 12 H -0.268 1.268 13 C 0.149 3.851 14 H 0.068 0.932 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.097 3.903 19 N -0.609 5.609 20 C 0.555 3.445 21 O -0.511 6.511 22 C -0.299 4.299 23 C 0.076 3.924 24 N -0.316 5.316 25 N -0.346 5.346 26 C 0.122 3.878 27 C -0.143 4.143 28 C -0.122 4.122 29 C -0.155 4.155 30 C 0.111 3.889 31 H 0.024 0.976 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.352 0.648 35 H 0.247 0.753 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.209 0.791 45 H 0.143 0.857 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.524 2.552 22.905 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.363 5.363 5 C -0.280 4.280 6 H 0.062 0.938 7 C -0.273 4.273 8 N -0.657 5.657 9 Si 0.779 3.221 10 H -0.207 1.207 11 H -0.236 1.236 12 H -0.194 1.194 13 C 0.045 3.955 14 H 0.086 0.914 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.165 4.165 18 C -0.025 4.025 19 N -0.344 5.344 20 C 0.342 3.658 21 O -0.385 6.385 22 C -0.314 4.314 23 C -0.110 4.110 24 N -0.135 5.135 25 N -0.125 5.125 26 C 0.022 3.978 27 C -0.182 4.182 28 C -0.160 4.160 29 C -0.194 4.194 30 C -0.040 4.040 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.184 0.816 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.225 0.775 45 H 0.161 0.839 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.133 0.867 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.081 0.919 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 13.544 2.810 22.498 26.410 hybrid contribution -0.503 -0.829 -1.257 1.588 sum 13.042 1.981 21.241 25.004 Atomic orbital electron populations 1.22417 0.97815 1.01185 1.00568 1.20579 0.91373 0.96453 0.84344 0.93641 1.42630 1.73039 1.17270 1.03381 1.18741 1.26835 0.98219 0.84182 0.93824 1.25193 1.04758 1.02095 0.95233 1.69877 1.57608 1.39864 0.98358 0.85458 0.78054 0.82190 0.76379 1.20707 1.23613 1.19409 1.21452 0.79624 0.99026 0.95361 0.91434 1.21960 1.00325 1.00386 0.93266 1.21515 0.95337 1.01201 0.97026 1.21888 0.96008 1.01009 0.97635 1.22184 0.97551 0.99461 0.83310 1.47802 1.07871 1.59204 1.19573 1.17795 0.85893 0.79986 0.82155 1.91183 1.69258 1.45440 1.32600 1.20479 0.94527 0.99605 1.16750 1.24374 0.88887 0.99995 0.97789 1.77026 1.21785 0.95503 1.19227 1.48789 1.05735 1.14120 1.43881 1.23573 0.85898 0.89817 0.98517 1.23474 1.00770 0.93361 1.00587 1.22737 0.99924 0.93827 0.99513 1.23451 1.01932 0.99347 0.94645 1.22867 0.84368 1.00109 0.96693 0.95684 0.93002 0.90392 0.81563 0.94437 0.92379 0.89292 0.89996 0.90952 0.92665 0.88469 0.88946 0.90309 0.77459 0.83915 0.90046 0.87621 0.86730 0.90039 0.89304 0.91944 0.79963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.84 8.70 71.98 0.63 -5.22 16 2 C 0.18 7.39 1.81 44.99 0.08 7.47 16 3 H 0.05 2.17 6.18 -2.39 -0.01 2.16 16 4 N -0.72 -36.84 3.09 -322.94 -1.00 -37.83 16 5 C -0.15 -9.19 8.83 84.03 0.74 -8.44 16 6 H 0.04 3.03 8.06 -2.91 -0.02 3.01 16 7 C -0.08 -5.49 5.50 84.86 0.47 -5.03 16 8 N -1.00 -70.07 13.97 21.65 0.30 -69.77 16 9 Si 0.95 51.56 27.74 68.60 1.90 53.46 16 10 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 11 H -0.31 -17.16 7.11 99.48 0.71 -16.45 16 12 H -0.27 -13.73 6.52 99.48 0.65 -13.08 16 13 C 0.15 4.55 2.58 44.97 0.12 4.67 16 14 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 15 C -0.12 -2.67 4.50 30.67 0.14 -2.53 16 16 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 17 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 18 C 0.10 1.97 5.28 86.36 0.46 2.42 16 19 N -0.61 -18.38 2.97 -798.89 -2.37 -20.75 16 20 C 0.55 21.23 7.31 86.67 0.63 21.86 16 21 O -0.51 -25.12 10.17 -4.04 -0.04 -25.16 16 22 C -0.30 -9.91 5.40 -20.15 -0.11 -10.02 16 23 C 0.08 2.12 9.57 85.65 0.82 2.94 16 24 N -0.32 -8.95 12.50 -56.28 -0.70 -9.65 16 25 N -0.35 -9.08 3.77 -323.24 -1.22 -10.30 16 26 C 0.12 2.22 5.01 45.52 0.23 2.45 16 27 C -0.14 -2.07 7.45 31.18 0.23 -1.84 16 28 C -0.12 -1.52 8.09 31.18 0.25 -1.26 16 29 C -0.16 -2.82 7.88 31.12 0.25 -2.58 16 30 C 0.11 3.38 10.64 84.28 0.90 4.28 16 31 H 0.02 1.05 7.98 -2.38 -0.02 1.03 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.23 6.45 -2.39 -0.02 2.21 16 34 H 0.35 17.83 5.57 -92.71 -0.52 17.32 16 35 H 0.25 16.62 8.31 -92.71 -0.77 15.85 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.75 6.70 -2.38 -0.02 1.74 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.85 4.46 -2.39 -0.01 1.84 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.21 4.53 6.84 -2.91 -0.02 4.51 16 45 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.08 1.45 6.29 -2.39 -0.02 1.43 16 47 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.18 5.34 6.66 -2.91 -0.02 5.32 16 Total: -1.00 -86.31 392.94 3.41 -82.90 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.35 Total: 31.35 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.19 Total: 5.77 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -4.99 Total: -148.31 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 1.90 Total: 53.46 kcal Total: -86.31 3.41 -82.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689903289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.998 kcal (2) G-P(sol) polarization free energy of solvation -86.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds