Wall clock time and date at job start Wed Apr 1 2020 04:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 N 1.46502 * 109.46710 * 120.00205 * 2 1 3 5 5 C 1.36940 * 119.99859 * 274.99452 * 4 2 1 6 6 H 1.08003 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47358 * 60.00059 * 9 7 5 11 11 H 1.48499 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47139 * 300.00162 * 9 7 5 13 13 C 1.52999 * 109.47015 * 239.99798 * 2 1 3 14 14 C 1.53041 * 109.45745 * 65.00124 * 13 2 1 15 15 C 1.53196 * 109.31198 * 178.61542 * 14 13 2 16 16 N 1.46920 * 108.77451 * 54.63149 * 15 14 13 17 17 C 1.34785 * 120.62744 * 126.37275 * 16 15 14 18 18 O 1.21283 * 119.99755 * 4.70461 * 17 16 15 19 19 C 1.50699 * 119.99972 * 184.70803 * 17 16 15 20 20 H 1.08995 * 109.52634 * 324.61405 * 19 17 16 21 21 C 1.53125 * 109.49672 * 204.51491 * 19 17 16 22 22 C 1.53284 * 109.70828 * 170.13889 * 21 19 17 23 23 N 1.46473 * 108.69621 * 50.74868 * 22 21 19 24 24 C 1.34403 * 128.44412 * 162.72043 * 23 22 21 25 25 N 1.30788 * 108.55494 * 180.12244 * 24 23 22 26 26 C 1.34422 * 109.31780 * 359.96119 * 25 24 23 27 27 C 1.33861 * 107.80371 * 359.97438 * 26 25 24 28 28 C 1.50710 * 128.68195 * 180.14882 * 27 26 25 29 29 C 1.46922 * 118.74634 * 306.64640 * 16 15 14 30 30 C 1.52762 * 109.00500 * 53.30780 * 29 16 15 31 31 H 1.09001 * 109.47164 * 299.99947 * 1 2 3 32 32 H 1.09003 * 109.47094 * 59.99984 * 1 2 3 33 33 H 1.08994 * 109.47400 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00193 * 95.00409 * 4 2 1 35 35 H 0.97008 * 119.99444 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.46056 * 184.97681 * 13 2 1 37 37 H 1.08996 * 109.49645 * 58.66312 * 14 13 2 38 38 H 1.08995 * 109.52597 * 298.58177 * 14 13 2 39 39 H 1.09004 * 109.58308 * 294.84538 * 15 14 13 40 40 H 1.08996 * 109.70520 * 174.49627 * 15 14 13 41 41 H 1.09004 * 109.42951 * 50.07084 * 21 19 17 42 42 H 1.08997 * 109.43839 * 290.21352 * 21 19 17 43 43 H 1.08997 * 109.59518 * 290.98494 * 22 21 19 44 44 H 1.08997 * 109.60036 * 170.51142 * 22 21 19 45 45 H 1.07999 * 125.72094 * 0.12810 * 24 23 22 46 46 H 1.08004 * 126.09943 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.74277 * 283.78291 * 28 27 26 48 48 H 1.08991 * 109.74699 * 44.45672 * 28 27 26 49 49 H 1.08995 * 109.59205 * 173.14529 * 29 16 15 50 50 H 1.09005 * 109.58320 * 293.57118 * 29 16 15 51 51 H 1.09001 * 109.56512 * 185.55992 * 30 29 16 52 52 H 1.08998 * 109.39032 * 65.51677 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6618 3.5091 8 7 2.9261 -1.9387 3.4497 9 14 2.7900 0.2699 5.1183 10 1 1.4673 0.8058 5.5288 11 1 3.3001 -0.6482 6.1681 12 1 3.7445 1.3930 4.9372 13 6 2.0400 -0.7213 -1.2492 14 6 1.6350 0.0693 -2.4954 15 6 2.1768 -0.6373 -3.7420 16 7 1.7130 -2.0313 -3.7345 17 6 1.0631 -2.5445 -4.7980 18 8 0.9311 -1.8822 -5.8054 19 6 0.5004 -3.9411 -4.7352 20 1 1.1632 -4.5748 -4.1462 21 6 0.3781 -4.5070 -6.1528 22 6 0.0428 -6.0012 -6.0857 23 7 -1.1026 -6.1857 -5.1916 24 6 -1.9168 -7.2498 -5.0853 25 7 -2.8122 -6.9984 -4.1657 26 6 -2.5970 -5.7721 -3.6590 27 6 -1.5350 -5.2509 -4.2854 28 6 -0.8879 -3.9052 -4.0815 29 6 1.9655 -2.8537 -2.5435 30 6 1.4309 -2.1238 -1.3126 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.2501 -2.3958 4.2416 36 1 3.1263 -0.7991 -1.2056 37 1 2.0498 1.0757 -2.4385 38 1 0.5481 0.1265 -2.5533 39 1 3.2666 -0.6147 -3.7301 40 1 1.8108 -0.1351 -4.6374 41 1 1.3222 -4.3705 -6.6804 42 1 -0.4138 -3.9813 -6.6862 43 1 0.9007 -6.5514 -5.6993 44 1 -0.2089 -6.3646 -7.0821 45 1 -1.8438 -8.1598 -5.6623 46 1 -3.1775 -5.2927 -2.8845 47 1 -1.4947 -3.1301 -4.5494 48 1 -0.7891 -3.7019 -3.0153 49 1 1.4579 -3.8127 -2.6471 50 1 3.0376 -3.0156 -2.4319 51 1 1.7004 -2.6784 -0.4137 52 1 0.3458 -2.0464 -1.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691673503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:51 Heat of formation + Delta-G solvation = 30.410377 kcal Electronic energy + Delta-G solvation = -31480.923277 eV Core-core repulsion = 27481.113852 eV Total energy + Delta-G solvation = -3999.809425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59527 -40.55870 -38.33947 -36.54100 -35.48539 -33.56851 -32.86846 -31.27240 -30.75310 -30.60706 -28.52605 -28.01333 -25.66251 -24.87950 -24.00131 -23.32902 -22.86785 -21.74630 -21.23531 -19.79014 -19.24317 -18.44876 -17.53077 -17.46797 -17.09417 -16.28755 -15.81037 -15.42904 -14.94229 -14.68865 -14.40931 -14.37954 -14.30442 -14.08100 -13.95633 -13.79886 -13.61564 -13.37905 -13.15693 -12.98297 -12.67810 -12.41803 -12.31870 -12.20639 -11.98528 -11.69891 -11.51015 -11.42211 -11.34858 -11.07439 -10.85056 -10.64931 -10.37400 -10.31333 -10.22246 -10.14783 -9.88220 -9.76647 -9.68262 -9.57638 -8.92685 -8.70749 -8.55687 -6.97343 -5.78781 -3.06600 1.81633 2.37929 2.48567 2.80532 2.98034 3.42354 3.47325 3.47769 3.91863 4.11498 4.17220 4.38130 4.52357 4.54955 4.56748 4.71129 4.72023 4.83118 4.94816 5.00540 5.05413 5.12819 5.15109 5.25758 5.31756 5.33553 5.40696 5.51670 5.52645 5.57956 5.59995 5.66849 5.74235 5.78836 5.92062 5.94020 6.07734 6.11069 6.15201 6.21922 6.26426 6.41987 6.50256 6.52717 6.63095 6.71759 6.89941 6.96608 7.12481 7.26211 7.68447 7.86135 7.97367 8.40761 9.51833 10.09909 10.44312 11.44021 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002582 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.089658 B =10843.645238 C =12136.326625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.523 3.477 18 O -0.546 6.546 19 C -0.113 4.113 20 H 0.100 0.900 21 C -0.114 4.114 22 C 0.104 3.896 23 N -0.457 5.457 24 C 0.182 3.818 25 N -0.496 5.496 26 C -0.019 4.019 27 C -0.020 4.020 28 C -0.033 4.033 29 C 0.101 3.899 30 C -0.129 4.129 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.204 0.796 46 H 0.171 0.829 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -7.221 -21.673 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.335 5.335 17 C 0.310 3.690 18 O -0.423 6.423 19 C -0.134 4.134 20 H 0.118 0.882 21 C -0.152 4.152 22 C -0.018 4.018 23 N -0.142 5.142 24 C -0.100 4.100 25 N -0.214 5.214 26 C -0.166 4.166 27 C -0.134 4.134 28 C -0.071 4.071 29 C -0.021 4.021 30 C -0.167 4.167 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.220 0.780 46 H 0.188 0.812 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.104 0.896 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.532 -7.290 -21.910 23.532 hybrid contribution 0.889 0.580 0.869 1.372 sum -3.643 -6.710 -21.042 22.384 Atomic orbital electron populations 1.22533 0.99553 1.00850 0.99727 1.20191 0.91758 0.95183 0.86036 0.93666 1.42445 1.78177 1.10665 1.05318 1.19194 1.36336 0.93827 0.87434 0.91365 1.24708 1.02288 0.95977 0.97988 1.69637 1.51045 1.08658 1.28976 0.86298 0.77762 0.78615 0.83696 1.21334 1.21737 1.21351 1.21399 1.00435 0.94425 0.94677 1.21998 1.01685 0.99162 0.93774 1.21655 0.98925 0.80815 0.99614 1.48164 1.56297 1.13102 1.15952 1.20306 0.77680 0.88208 0.82796 1.90687 1.58972 1.61797 1.30881 1.21453 0.98383 0.95137 0.98471 0.88244 1.21698 1.04546 0.92868 0.96097 1.22035 0.87392 0.98286 0.94094 1.45451 1.24771 1.14248 1.29706 1.24792 0.90480 0.93632 1.01089 1.70516 1.24155 1.16009 1.10708 1.21875 0.98399 0.92759 1.03594 1.20991 1.00753 0.94107 0.97589 1.20125 0.92738 0.91908 1.02359 1.21882 1.01423 0.94009 0.84781 1.21936 1.01016 0.96737 0.97010 0.93146 0.94518 0.93239 0.78280 0.93517 0.90969 0.90711 0.91265 0.91548 0.89352 0.88949 0.89691 0.89460 0.88599 0.77961 0.81225 0.89356 0.88517 0.89945 0.91011 0.89561 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.76 37.16 0.33 -2.50 16 2 C 0.18 3.25 2.67 -67.93 -0.18 3.06 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.99 5.06 -53.42 -0.27 -17.26 16 5 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 9 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.09 -1.28 2.08 -90.58 -0.19 -1.47 16 14 C -0.13 -1.52 5.08 -26.61 -0.14 -1.66 16 15 C 0.11 1.26 6.42 -3.71 -0.02 1.23 16 16 N -0.60 -6.56 2.98 -173.03 -0.52 -7.07 16 17 C 0.52 5.84 6.77 -10.98 -0.07 5.77 16 18 O -0.55 -7.79 15.69 5.55 0.09 -7.70 16 19 C -0.11 -0.95 1.70 -91.46 -0.16 -1.11 16 20 H 0.10 0.75 6.28 -51.93 -0.33 0.42 16 21 C -0.11 -0.81 4.61 -26.52 -0.12 -0.94 16 22 C 0.10 0.57 7.00 -3.91 -0.03 0.55 16 23 N -0.46 -3.92 3.13 -114.09 -0.36 -4.27 16 24 C 0.18 1.69 12.66 -90.71 -1.15 0.54 16 25 N -0.50 -6.14 11.27 -14.87 -0.17 -6.31 16 26 C -0.02 -0.22 11.84 -17.95 -0.21 -0.43 16 27 C -0.02 -0.20 6.57 -81.73 -0.54 -0.74 16 28 C -0.03 -0.29 5.53 -27.63 -0.15 -0.44 16 29 C 0.10 1.04 6.24 -3.93 -0.02 1.02 16 30 C -0.13 -1.67 4.70 -26.83 -0.13 -1.79 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.53 6.60 -51.93 -0.34 0.18 16 33 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 34 H 0.38 9.41 6.35 -40.82 -0.26 9.15 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.85 6.64 -51.93 -0.34 0.51 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.05 7.03 -51.93 -0.37 0.68 16 41 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 47 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 48 H 0.10 0.84 7.79 -51.93 -0.40 0.43 16 49 H 0.08 0.71 5.10 -51.93 -0.26 0.45 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 1.30 6.74 -51.93 -0.35 0.95 16 52 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -33.40 397.11 -10.92 -44.33 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.36 Total: 7.84 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.03 Total: -5.89 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.59 Total: -61.56 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.40 -10.92 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691673503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.738 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds