Wall clock time and date at job start Wed Apr 1 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 N 1.46502 * 109.46710 * 120.00205 * 2 1 3 5 5 C 1.36940 * 119.99859 * 274.99452 * 4 2 1 6 6 H 1.08003 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47358 * 60.00059 * 9 7 5 11 11 H 1.48499 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47139 * 300.00162 * 9 7 5 13 13 C 1.52999 * 109.47015 * 239.99798 * 2 1 3 14 14 C 1.53041 * 109.45745 * 65.00124 * 13 2 1 15 15 C 1.53196 * 109.31198 * 178.61542 * 14 13 2 16 16 N 1.46920 * 108.77451 * 54.63149 * 15 14 13 17 17 C 1.34785 * 120.62744 * 126.37275 * 16 15 14 18 18 O 1.21283 * 119.99755 * 4.70461 * 17 16 15 19 19 C 1.50699 * 119.99972 * 184.70803 * 17 16 15 20 20 H 1.08995 * 109.52634 * 324.61405 * 19 17 16 21 21 C 1.53125 * 109.49672 * 204.51491 * 19 17 16 22 22 C 1.53284 * 109.70828 * 170.13889 * 21 19 17 23 23 N 1.46473 * 108.69621 * 50.74868 * 22 21 19 24 24 C 1.34403 * 128.44412 * 162.72043 * 23 22 21 25 25 N 1.30788 * 108.55494 * 180.12244 * 24 23 22 26 26 C 1.34422 * 109.31780 * 359.96119 * 25 24 23 27 27 C 1.33861 * 107.80371 * 359.97438 * 26 25 24 28 28 C 1.50710 * 128.68195 * 180.14882 * 27 26 25 29 29 C 1.46922 * 118.74634 * 306.64640 * 16 15 14 30 30 C 1.52762 * 109.00500 * 53.30780 * 29 16 15 31 31 H 1.09001 * 109.47164 * 299.99947 * 1 2 3 32 32 H 1.09003 * 109.47094 * 59.99984 * 1 2 3 33 33 H 1.08994 * 109.47400 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00193 * 95.00409 * 4 2 1 35 35 H 0.97008 * 119.99444 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.46056 * 184.97681 * 13 2 1 37 37 H 1.08996 * 109.49645 * 58.66312 * 14 13 2 38 38 H 1.08995 * 109.52597 * 298.58177 * 14 13 2 39 39 H 1.09004 * 109.58308 * 294.84538 * 15 14 13 40 40 H 1.08996 * 109.70520 * 174.49627 * 15 14 13 41 41 H 1.09004 * 109.42951 * 50.07084 * 21 19 17 42 42 H 1.08997 * 109.43839 * 290.21352 * 21 19 17 43 43 H 1.08997 * 109.59518 * 290.98494 * 22 21 19 44 44 H 1.08997 * 109.60036 * 170.51142 * 22 21 19 45 45 H 1.07999 * 125.72094 * 0.12810 * 24 23 22 46 46 H 1.08004 * 126.09943 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.74277 * 283.78291 * 28 27 26 48 48 H 1.08991 * 109.74699 * 44.45672 * 28 27 26 49 49 H 1.08995 * 109.59205 * 173.14529 * 29 16 15 50 50 H 1.09005 * 109.58320 * 293.57118 * 29 16 15 51 51 H 1.09001 * 109.56512 * 185.55992 * 30 29 16 52 52 H 1.08998 * 109.39032 * 65.51677 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6618 3.5091 8 7 2.9261 -1.9387 3.4497 9 14 2.7900 0.2699 5.1183 10 1 1.4673 0.8058 5.5288 11 1 3.3001 -0.6482 6.1681 12 1 3.7445 1.3930 4.9372 13 6 2.0400 -0.7213 -1.2492 14 6 1.6350 0.0693 -2.4954 15 6 2.1768 -0.6373 -3.7420 16 7 1.7130 -2.0313 -3.7345 17 6 1.0631 -2.5445 -4.7980 18 8 0.9311 -1.8822 -5.8054 19 6 0.5004 -3.9411 -4.7352 20 1 1.1632 -4.5748 -4.1462 21 6 0.3781 -4.5070 -6.1528 22 6 0.0428 -6.0012 -6.0857 23 7 -1.1026 -6.1857 -5.1916 24 6 -1.9168 -7.2498 -5.0853 25 7 -2.8122 -6.9984 -4.1657 26 6 -2.5970 -5.7721 -3.6590 27 6 -1.5350 -5.2509 -4.2854 28 6 -0.8879 -3.9052 -4.0815 29 6 1.9655 -2.8537 -2.5435 30 6 1.4309 -2.1238 -1.3126 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.2501 -2.3958 4.2416 36 1 3.1263 -0.7991 -1.2056 37 1 2.0498 1.0757 -2.4385 38 1 0.5481 0.1265 -2.5533 39 1 3.2666 -0.6147 -3.7301 40 1 1.8108 -0.1351 -4.6374 41 1 1.3222 -4.3705 -6.6804 42 1 -0.4138 -3.9813 -6.6862 43 1 0.9007 -6.5514 -5.6993 44 1 -0.2089 -6.3646 -7.0821 45 1 -1.8438 -8.1598 -5.6623 46 1 -3.1775 -5.2927 -2.8845 47 1 -1.4947 -3.1301 -4.5494 48 1 -0.7891 -3.7019 -3.0153 49 1 1.4579 -3.8127 -2.6471 50 1 3.0376 -3.0156 -2.4319 51 1 1.7004 -2.6784 -0.4137 52 1 0.3458 -2.0464 -1.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691673503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:50 Heat of formation + Delta-G solvation = 11.764852 kcal Electronic energy + Delta-G solvation = -31481.731807 eV Core-core repulsion = 27481.113852 eV Total energy + Delta-G solvation = -4000.617956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.29191 -41.47490 -39.45998 -37.30016 -36.82770 -34.71837 -34.09839 -32.44684 -31.94177 -31.46106 -29.92401 -28.93369 -26.79675 -25.94480 -25.29114 -24.39441 -23.80987 -22.54135 -22.28236 -20.76909 -20.10916 -19.45848 -19.21685 -18.22696 -18.11090 -17.07305 -16.70812 -16.59042 -16.25313 -15.88746 -15.53871 -15.45116 -15.17982 -14.99755 -14.94178 -14.83130 -14.64370 -14.28709 -14.15982 -14.03921 -14.01294 -13.60484 -13.17613 -12.99735 -12.96355 -12.90528 -12.84309 -12.74317 -12.61563 -12.20655 -12.15544 -12.04864 -11.95669 -11.72835 -11.57371 -11.25236 -11.12438 -10.96174 -10.86389 -10.66751 -10.42870 -9.66543 -9.30606 -8.94429 -7.90807 -5.16706 1.11823 1.48315 1.49767 1.50614 1.55790 1.88240 1.97208 2.20836 2.58588 3.21571 3.42737 3.52757 3.54436 3.74441 3.76488 3.79983 3.91051 3.94950 3.99391 4.13638 4.15792 4.26559 4.29142 4.36689 4.41191 4.45136 4.51221 4.57293 4.63171 4.67565 4.71720 4.74511 4.79918 4.85193 4.89721 4.91623 4.96627 5.02308 5.08593 5.11923 5.15500 5.28505 5.36769 5.40626 5.45038 5.55010 5.61623 5.73871 5.77865 6.32912 6.35034 6.37980 7.09426 7.13591 7.39533 8.18560 8.41333 9.32354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002582 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.089658 B =10843.645238 C =12136.326625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.036 0.964 4 N -0.734 5.734 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.117 4.117 15 C 0.114 3.886 16 N -0.602 5.602 17 C 0.524 3.476 18 O -0.577 6.577 19 C -0.107 4.107 20 H 0.115 0.885 21 C -0.111 4.111 22 C 0.104 3.896 23 N -0.456 5.456 24 C 0.187 3.813 25 N -0.540 5.540 26 C -0.047 4.047 27 C -0.023 4.023 28 C -0.027 4.027 29 C 0.110 3.890 30 C -0.123 4.123 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.239 0.761 46 H 0.170 0.830 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.063 0.937 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 -7.694 -23.456 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.054 0.946 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.206 1.206 13 C -0.099 4.099 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.334 5.334 17 C 0.313 3.687 18 O -0.457 6.457 19 C -0.128 4.128 20 H 0.133 0.867 21 C -0.149 4.149 22 C -0.016 4.016 23 N -0.139 5.139 24 C -0.095 4.095 25 N -0.259 5.259 26 C -0.194 4.194 27 C -0.138 4.138 28 C -0.065 4.065 29 C -0.012 4.012 30 C -0.162 4.162 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.255 0.745 46 H 0.187 0.813 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.081 0.919 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.103 -7.726 -23.725 25.287 hybrid contribution 0.729 0.783 1.343 1.717 sum -3.374 -6.943 -22.382 23.676 Atomic orbital electron populations 1.22378 0.98207 1.00971 1.00015 1.20425 0.92529 0.94718 0.85947 0.94591 1.42631 1.78359 1.10465 1.06072 1.19543 1.34512 0.94008 0.88639 0.91244 1.25421 1.03346 0.96859 1.01027 1.69779 1.52794 1.09972 1.29290 0.85343 0.77765 0.77416 0.80044 1.20843 1.22321 1.20646 1.21239 0.99668 0.95233 0.93783 1.21900 1.01670 0.99273 0.92756 1.21606 0.99410 0.81007 0.98768 1.48208 1.56076 1.13031 1.16036 1.20715 0.76951 0.88919 0.82131 1.90677 1.60097 1.62850 1.32070 1.21454 0.97959 0.93634 0.99747 0.86706 1.21668 1.04452 0.93822 0.94922 1.22290 0.87033 0.97264 0.95033 1.45647 1.25221 1.13607 1.29458 1.25470 0.89362 0.94544 1.00132 1.70468 1.26148 1.16743 1.12569 1.22053 0.99519 0.93225 1.04567 1.21029 1.00474 0.94562 0.97713 1.20051 0.92857 0.91217 1.02405 1.21837 1.01931 0.94297 0.83182 1.21829 1.01068 0.95836 0.97425 0.95458 0.91549 0.93204 0.79164 0.94188 0.92049 0.89933 0.91266 0.90695 0.89692 0.88054 0.91328 0.87310 0.85988 0.74478 0.81302 0.90226 0.88381 0.87814 0.90388 0.91890 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 8.76 71.98 0.63 -4.54 16 2 C 0.17 6.21 2.67 44.99 0.12 6.33 16 3 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 4 N -0.73 -34.83 5.06 -322.93 -1.63 -36.46 16 5 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 9 Si 0.96 45.65 29.55 68.60 2.03 47.68 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 C -0.08 -2.21 2.08 -10.77 -0.02 -2.23 16 14 C -0.12 -2.60 5.08 30.67 0.16 -2.44 16 15 C 0.11 2.35 6.42 86.37 0.55 2.91 16 16 N -0.60 -11.88 2.98 -819.74 -2.44 -14.32 16 17 C 0.52 10.71 6.77 87.66 0.59 11.30 16 18 O -0.58 -15.67 15.69 -3.04 -0.05 -15.71 16 19 C -0.11 -1.56 1.70 -11.33 -0.02 -1.58 16 20 H 0.12 1.35 6.28 -2.39 -0.02 1.33 16 21 C -0.11 -1.30 4.61 30.73 0.14 -1.16 16 22 C 0.10 0.79 7.00 86.48 0.61 1.39 16 23 N -0.46 -6.72 3.13 -514.86 -1.61 -8.33 16 24 C 0.19 3.07 12.66 180.38 2.28 5.36 16 25 N -0.54 -13.09 11.27 -200.97 -2.26 -15.35 16 26 C -0.05 -1.08 11.84 83.30 0.99 -0.09 16 27 C -0.02 -0.43 6.57 40.73 0.27 -0.16 16 28 C -0.03 -0.44 5.53 30.01 0.17 -0.27 16 29 C 0.11 2.03 6.24 86.22 0.54 2.57 16 30 C -0.12 -3.07 4.70 30.53 0.14 -2.93 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.79 6.60 -2.39 -0.02 1.78 16 33 H 0.05 1.64 6.37 -2.39 -0.02 1.62 16 34 H 0.38 18.82 6.35 -92.71 -0.59 18.23 16 35 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.55 6.64 -2.39 -0.02 1.54 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.87 7.03 -2.39 -0.02 1.86 16 41 H 0.10 1.05 8.11 -2.39 -0.02 1.03 16 42 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.24 1.79 8.06 -2.91 -0.02 1.76 16 46 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 47 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 48 H 0.10 1.58 7.79 -2.39 -0.02 1.56 16 49 H 0.10 1.51 5.10 -2.39 -0.01 1.50 16 50 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 51 H 0.06 1.90 6.74 -2.39 -0.02 1.89 16 52 H 0.07 1.75 6.43 -2.39 -0.02 1.74 16 Total: -1.00 -73.24 397.11 3.09 -70.15 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.34 Total: 30.81 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 8.45 Total: -1.11 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -7.67 Total: -131.81 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.05 Total: -15.71 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.24 3.09 -70.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691673503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.912 kcal (2) G-P(sol) polarization free energy of solvation -73.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds