Wall clock time and date at job start Wed Apr 1 2020 03:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47323 * 120.00350 * 2 1 3 5 5 N 1.32160 * 120.53915 * 305.43997 * 4 2 1 6 6 C 1.31849 * 120.97094 * 180.28692 * 5 4 2 7 7 N 1.31881 * 122.09517 * 359.75349 * 6 5 4 8 8 C 1.32136 * 120.96720 * 359.97438 * 7 6 5 9 9 C 1.39932 * 120.53701 * 125.20592 * 4 2 1 10 10 C 1.47829 * 120.94049 * 359.96800 * 9 4 2 11 11 O 1.21561 * 119.99733 * 53.87240 * 10 9 4 12 12 N 1.34767 * 120.00369 * 233.87000 * 10 9 4 13 13 C 1.46923 * 120.63291 * 175.96783 * 12 10 9 14 14 C 1.53197 * 108.77657 * 233.58464 * 13 12 10 15 15 C 1.53036 * 109.31330 * 305.36417 * 14 13 12 16 16 C 1.52994 * 109.46350 * 181.38124 * 15 14 13 17 17 H 1.09013 * 109.47010 * 59.97078 * 16 15 14 18 18 C 1.53000 * 109.47147 * 299.97943 * 16 15 14 19 19 N 1.46492 * 109.47694 * 179.97438 * 16 15 14 20 20 C 1.36937 * 120.00653 * 205.00358 * 19 16 15 21 21 H 1.08010 * 119.99466 * 359.97438 * 20 19 16 22 22 C 1.38807 * 120.00569 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99816 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00178 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47080 * 60.00556 * 24 22 20 26 26 H 1.48506 * 109.47320 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47560 * 300.00398 * 24 22 20 28 28 C 1.53046 * 109.52672 * 61.37019 * 15 14 13 29 29 C 1.46934 * 120.62958 * 355.94160 * 12 10 9 30 30 H 1.09000 * 109.46841 * 299.99575 * 1 2 3 31 31 H 1.08996 * 109.47683 * 59.99990 * 1 2 3 32 32 H 1.09005 * 109.47544 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46990 * 240.00209 * 2 1 3 34 34 H 1.09001 * 109.46914 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46808 * 299.99839 * 3 2 1 36 36 H 1.09000 * 109.46912 * 60.00469 * 3 2 1 37 37 H 1.08002 * 118.95242 * 179.72684 * 6 5 4 38 38 H 1.07998 * 120.54181 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.58935 * 113.79828 * 13 12 10 40 40 H 1.09002 * 109.70712 * 353.44168 * 13 12 10 41 41 H 1.08999 * 109.49520 * 185.41243 * 14 13 12 42 42 H 1.09006 * 109.52203 * 65.33087 * 14 13 12 43 43 H 1.08999 * 109.46177 * 301.35661 * 15 14 13 44 44 H 1.09000 * 109.47081 * 179.97438 * 18 16 15 45 45 H 1.08989 * 109.47609 * 59.99729 * 18 16 15 46 46 H 1.09001 * 109.46489 * 299.99000 * 18 16 15 47 47 H 0.97006 * 120.00218 * 25.00420 * 19 16 15 48 48 H 0.97007 * 120.00008 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.49677 * 58.57829 * 28 15 14 50 50 H 1.09000 * 109.49463 * 178.67638 * 28 15 14 51 51 H 1.08998 * 109.58801 * 246.19743 * 29 12 10 52 52 H 1.08995 * 109.58246 * 6.49046 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6339 -0.3340 2.4330 6 6 2.0724 -0.9459 3.5154 7 7 2.9175 -1.9566 3.4553 8 6 3.3634 -2.4018 2.2939 9 6 2.9245 -1.7827 1.1179 10 6 3.3946 -2.2446 -0.2054 11 8 3.8999 -1.4558 -0.9802 12 7 3.2631 -3.5400 -0.5528 13 6 3.6441 -3.9973 -1.8961 14 6 2.4588 -4.7423 -2.5181 15 6 2.0141 -5.8628 -1.5753 16 6 0.8525 -6.6310 -2.2087 17 1 1.1751 -7.0602 -3.1574 18 6 -0.3177 -5.6760 -2.4528 19 7 0.4271 -7.7041 -1.3068 20 6 -0.2014 -8.8121 -1.8092 21 1 -0.3837 -8.8947 -2.8706 22 6 -0.6040 -9.8292 -0.9547 23 7 -0.3822 -9.7283 0.3388 24 14 -1.4619 -11.3403 -1.6401 25 1 -0.5665 -12.0204 -2.6102 26 1 -1.7875 -12.2711 -0.5297 27 1 -2.7141 -10.9306 -2.3253 28 6 1.5611 -5.2608 -0.2431 29 6 2.7364 -4.5221 0.4048 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.7288 -0.6085 4.4822 38 1 4.0557 -3.2297 2.2527 39 1 4.5004 -4.6680 -1.8246 40 1 3.9028 -3.1394 -2.5167 41 1 2.7592 -5.1695 -3.4748 42 1 1.6328 -4.0479 -2.6729 43 1 2.8477 -6.5433 -1.4015 44 1 -1.1451 -6.2232 -2.9045 45 1 -0.0012 -4.8776 -3.1239 46 1 -0.6403 -5.2469 -1.5042 47 1 0.5905 -7.6298 -0.3535 48 1 -0.6633 -10.4392 0.9360 49 1 0.7439 -4.5613 -0.4192 50 1 1.2224 -6.0573 0.4195 51 1 3.5186 -5.2357 0.6639 52 1 2.3969 -4.0092 1.3046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691691686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:17 Heat of formation + Delta-G solvation = 14.354444 kcal Electronic energy + Delta-G solvation = -31796.137340 eV Core-core repulsion = 27795.631677 eV Total energy + Delta-G solvation = -4000.505662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.77740 -40.02219 -38.15284 -36.40416 -35.46103 -33.62235 -32.94570 -32.13549 -30.89161 -30.59002 -28.26492 -27.35931 -26.11048 -25.27797 -24.91894 -23.70978 -23.22742 -21.72887 -21.12328 -20.01120 -18.72082 -18.30359 -17.43382 -17.19999 -16.98478 -16.30046 -15.50061 -15.02108 -14.98189 -14.73284 -14.46977 -14.40088 -14.30723 -13.87721 -13.83100 -13.69201 -13.38289 -13.18859 -13.13031 -12.67978 -12.39508 -12.27164 -12.08602 -11.89672 -11.80306 -11.70275 -11.54303 -11.44776 -11.11307 -11.08054 -10.86839 -10.80817 -10.65680 -10.41010 -10.33661 -10.18379 -10.10721 -9.85002 -9.64954 -9.58644 -9.56940 -8.93780 -8.75978 -6.98591 -5.79699 -3.07730 0.27347 0.68828 2.33725 2.74587 3.38604 3.41532 3.46471 3.46976 3.63800 3.77531 3.95199 4.12702 4.54750 4.55699 4.72542 4.81043 4.84622 4.89356 4.98301 5.00672 5.09574 5.11855 5.28825 5.36336 5.36959 5.45408 5.50143 5.57183 5.62974 5.65975 5.69571 5.74206 5.76275 5.89052 5.90780 5.93138 6.01453 6.05376 6.10347 6.12257 6.17910 6.24851 6.39772 6.47132 6.56180 6.60861 6.70800 6.87359 7.10301 7.15941 7.67405 7.69440 7.85109 8.39803 9.50793 10.08742 10.42985 11.43110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002735 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.850881 B =10233.853722 C =10672.210248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.134 4.134 4 C 0.232 3.768 5 N -0.514 5.514 6 C 0.311 3.689 7 N -0.522 5.522 8 C 0.183 3.817 9 C -0.232 4.232 10 C 0.571 3.429 11 O -0.531 6.531 12 N -0.596 5.596 13 C 0.113 3.887 14 C -0.129 4.129 15 C -0.090 4.090 16 C 0.178 3.822 17 H 0.047 0.953 18 C -0.167 4.167 19 N -0.724 5.724 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C -0.127 4.127 29 C 0.099 3.901 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.201 0.799 38 H 0.174 0.826 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.046 0.954 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.486 19.952 1.657 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.192 4.192 4 C 0.085 3.915 5 N -0.227 5.227 6 C 0.024 3.976 7 N -0.235 5.235 8 C 0.016 3.984 9 C -0.239 4.239 10 C 0.357 3.643 11 O -0.409 6.409 12 N -0.328 5.328 13 C -0.009 4.009 14 C -0.167 4.167 15 C -0.109 4.109 16 C 0.068 3.932 17 H 0.065 0.935 18 C -0.227 4.227 19 N -0.367 5.367 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.583 5.583 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.165 4.165 29 C -0.024 4.024 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.218 0.782 38 H 0.191 0.809 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.096 0.904 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.354 20.514 2.060 21.889 hybrid contribution -0.252 -1.406 -0.574 1.540 sum 7.103 19.107 1.486 20.439 Atomic orbital electron populations 1.21796 0.92858 1.02352 1.02875 1.20355 0.97023 0.97105 0.92969 1.21709 1.01314 0.93672 1.02516 1.21785 0.87429 0.88234 0.94005 1.68271 1.25583 1.30364 0.98516 1.25203 0.87892 0.86872 0.97649 1.68470 1.12773 1.14032 1.28267 1.23490 0.93423 0.95162 0.86350 1.21611 1.04437 1.01388 0.96507 1.17800 0.78736 0.82120 0.85634 1.90790 1.44140 1.53734 1.52200 1.48092 1.62707 1.07116 1.14860 1.21715 0.97441 0.99561 0.82156 1.22030 0.97707 0.97953 0.99042 1.21400 0.99333 0.95901 0.94299 1.20183 0.90862 0.88436 0.93687 0.93549 1.22534 1.00815 0.99104 1.00231 1.42477 1.70211 1.17900 1.06072 1.19195 1.29708 0.95411 0.92534 0.91344 1.24709 1.01990 0.98816 0.95429 1.69635 1.52684 1.34240 1.01758 0.86296 0.79519 0.82997 0.77539 1.21313 1.21728 1.21350 1.21973 0.96588 1.00134 0.97837 1.22093 0.97516 0.91197 0.91584 0.91325 0.91641 0.92676 0.88399 0.92421 0.91623 0.91832 0.78228 0.80925 0.91126 0.89044 0.90481 0.91138 0.90887 0.93116 0.94404 0.93455 0.78230 0.93497 0.91400 0.89414 0.90433 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.06 37.16 0.34 -1.01 16 2 C -0.06 -0.59 2.91 -91.77 -0.27 -0.86 16 3 C -0.13 -1.27 9.15 37.16 0.34 -0.93 16 4 C 0.23 2.69 5.52 -81.82 -0.45 2.24 16 5 N -0.51 -5.65 9.99 -10.48 -0.10 -5.76 16 6 C 0.31 3.04 12.27 -92.03 -1.13 1.91 16 7 N -0.52 -5.62 10.42 -14.24 -0.15 -5.77 16 8 C 0.18 1.91 8.75 -16.77 -0.15 1.77 16 9 C -0.23 -2.70 4.90 -104.69 -0.51 -3.21 16 10 C 0.57 7.18 6.34 -12.34 -0.08 7.11 16 11 O -0.53 -7.89 15.05 5.31 0.08 -7.81 16 12 N -0.60 -6.86 2.97 -173.88 -0.52 -7.38 16 13 C 0.11 1.25 6.42 -3.71 -0.02 1.22 16 14 C -0.13 -1.52 4.97 -26.61 -0.13 -1.65 16 15 C -0.09 -1.30 2.14 -90.58 -0.19 -1.49 16 16 C 0.18 3.26 2.72 -67.94 -0.18 3.08 16 17 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16 18 C -0.17 -2.86 8.79 37.16 0.33 -2.53 16 19 N -0.72 -17.07 5.04 -53.43 -0.27 -17.34 16 20 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 21 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.13 -1.76 4.81 -26.61 -0.13 -1.89 16 29 C 0.10 1.10 5.59 -3.70 -0.02 1.08 16 30 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.18 5.76 -51.92 -0.30 0.88 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.17 1.44 7.44 -52.49 -0.39 1.05 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.04 7.04 -51.93 -0.37 0.67 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.54 6.46 -51.94 -0.34 0.21 16 46 H 0.05 0.82 6.46 -51.93 -0.34 0.48 16 47 H 0.38 9.46 6.04 -40.82 -0.25 9.21 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 50 H 0.09 1.41 6.46 -51.93 -0.34 1.08 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.08 0.83 4.73 -51.93 -0.25 0.59 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -31.40 402.25 -9.97 -41.37 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.26 Total: 8.49 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.51 Total: -2.16 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.31 Total: -62.94 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.08 Total: -7.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.40 -9.97 -41.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.726 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds