Wall clock time and date at job start Wed Apr 1 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47323 * 120.00350 * 2 1 3 5 5 N 1.32160 * 120.53915 * 305.43997 * 4 2 1 6 6 C 1.31849 * 120.97094 * 180.28692 * 5 4 2 7 7 N 1.31881 * 122.09517 * 359.75349 * 6 5 4 8 8 C 1.32136 * 120.96720 * 359.97438 * 7 6 5 9 9 C 1.39932 * 120.53701 * 125.20592 * 4 2 1 10 10 C 1.47829 * 120.94049 * 359.96800 * 9 4 2 11 11 O 1.21561 * 119.99733 * 53.87240 * 10 9 4 12 12 N 1.34767 * 120.00369 * 233.87000 * 10 9 4 13 13 C 1.46923 * 120.63291 * 175.96783 * 12 10 9 14 14 C 1.53197 * 108.77657 * 233.58464 * 13 12 10 15 15 C 1.53036 * 109.31330 * 305.36417 * 14 13 12 16 16 C 1.52994 * 109.46350 * 181.38124 * 15 14 13 17 17 H 1.09013 * 109.47010 * 59.97078 * 16 15 14 18 18 C 1.53000 * 109.47147 * 299.97943 * 16 15 14 19 19 N 1.46492 * 109.47694 * 179.97438 * 16 15 14 20 20 C 1.36937 * 120.00653 * 205.00358 * 19 16 15 21 21 H 1.08010 * 119.99466 * 359.97438 * 20 19 16 22 22 C 1.38807 * 120.00569 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99816 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00178 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47080 * 60.00556 * 24 22 20 26 26 H 1.48506 * 109.47320 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47560 * 300.00398 * 24 22 20 28 28 C 1.53046 * 109.52672 * 61.37019 * 15 14 13 29 29 C 1.46934 * 120.62958 * 355.94160 * 12 10 9 30 30 H 1.09000 * 109.46841 * 299.99575 * 1 2 3 31 31 H 1.08996 * 109.47683 * 59.99990 * 1 2 3 32 32 H 1.09005 * 109.47544 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46990 * 240.00209 * 2 1 3 34 34 H 1.09001 * 109.46914 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46808 * 299.99839 * 3 2 1 36 36 H 1.09000 * 109.46912 * 60.00469 * 3 2 1 37 37 H 1.08002 * 118.95242 * 179.72684 * 6 5 4 38 38 H 1.07998 * 120.54181 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.58935 * 113.79828 * 13 12 10 40 40 H 1.09002 * 109.70712 * 353.44168 * 13 12 10 41 41 H 1.08999 * 109.49520 * 185.41243 * 14 13 12 42 42 H 1.09006 * 109.52203 * 65.33087 * 14 13 12 43 43 H 1.08999 * 109.46177 * 301.35661 * 15 14 13 44 44 H 1.09000 * 109.47081 * 179.97438 * 18 16 15 45 45 H 1.08989 * 109.47609 * 59.99729 * 18 16 15 46 46 H 1.09001 * 109.46489 * 299.99000 * 18 16 15 47 47 H 0.97006 * 120.00218 * 25.00420 * 19 16 15 48 48 H 0.97007 * 120.00008 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.49677 * 58.57829 * 28 15 14 50 50 H 1.09000 * 109.49463 * 178.67638 * 28 15 14 51 51 H 1.08998 * 109.58801 * 246.19743 * 29 12 10 52 52 H 1.08995 * 109.58246 * 6.49046 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6339 -0.3340 2.4330 6 6 2.0724 -0.9459 3.5154 7 7 2.9175 -1.9566 3.4553 8 6 3.3634 -2.4018 2.2939 9 6 2.9245 -1.7827 1.1179 10 6 3.3946 -2.2446 -0.2054 11 8 3.8999 -1.4558 -0.9802 12 7 3.2631 -3.5400 -0.5528 13 6 3.6441 -3.9973 -1.8961 14 6 2.4588 -4.7423 -2.5181 15 6 2.0141 -5.8628 -1.5753 16 6 0.8525 -6.6310 -2.2087 17 1 1.1751 -7.0602 -3.1574 18 6 -0.3177 -5.6760 -2.4528 19 7 0.4271 -7.7041 -1.3068 20 6 -0.2014 -8.8121 -1.8092 21 1 -0.3837 -8.8947 -2.8706 22 6 -0.6040 -9.8292 -0.9547 23 7 -0.3822 -9.7283 0.3388 24 14 -1.4619 -11.3403 -1.6401 25 1 -0.5665 -12.0204 -2.6102 26 1 -1.7875 -12.2711 -0.5297 27 1 -2.7141 -10.9306 -2.3253 28 6 1.5611 -5.2608 -0.2431 29 6 2.7364 -4.5221 0.4048 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.7288 -0.6085 4.4822 38 1 4.0557 -3.2297 2.2527 39 1 4.5004 -4.6680 -1.8246 40 1 3.9028 -3.1394 -2.5167 41 1 2.7592 -5.1695 -3.4748 42 1 1.6328 -4.0479 -2.6729 43 1 2.8477 -6.5433 -1.4015 44 1 -1.1451 -6.2232 -2.9045 45 1 -0.0012 -4.8776 -3.1239 46 1 -0.6403 -5.2469 -1.5042 47 1 0.5905 -7.6298 -0.3535 48 1 -0.6633 -10.4392 0.9360 49 1 0.7439 -4.5613 -0.4192 50 1 1.2224 -6.0573 0.4195 51 1 3.5186 -5.2357 0.6639 52 1 2.3969 -4.0092 1.3046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691691686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:15 Heat of formation + Delta-G solvation = -3.219088 kcal Electronic energy + Delta-G solvation = -31796.899385 eV Core-core repulsion = 27795.631677 eV Total energy + Delta-G solvation = -4001.267708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.62157 -40.99810 -39.32312 -37.30641 -36.75133 -34.83672 -34.20012 -33.15468 -32.09768 -31.86092 -29.86948 -28.11236 -27.14692 -26.25423 -26.09651 -25.21687 -24.30890 -22.94537 -21.92692 -21.12022 -19.90396 -19.31861 -19.04763 -18.31852 -17.77703 -17.28686 -16.70367 -16.41733 -16.04791 -15.80137 -15.56226 -15.48528 -15.40564 -15.13256 -15.08277 -14.62973 -14.37349 -14.25499 -14.17943 -14.10509 -13.67798 -13.18058 -13.09470 -12.99832 -12.93623 -12.78608 -12.74495 -12.64887 -12.55949 -12.34398 -12.20313 -12.01851 -11.93477 -11.78517 -11.63738 -11.60316 -11.26597 -11.15477 -11.00484 -10.87639 -10.59097 -10.38816 -9.75423 -8.95793 -7.91476 -5.17741 -0.54390 -0.13548 1.38548 1.47954 1.49532 1.55509 1.82337 2.57557 2.58099 2.85789 3.03666 3.16116 3.24283 3.42044 3.71702 3.73177 3.79757 3.89099 3.99134 4.05326 4.10999 4.13479 4.25170 4.27732 4.35646 4.37979 4.51793 4.56270 4.64566 4.70547 4.74652 4.76008 4.85105 4.86240 4.88862 4.92301 4.97835 5.01792 5.06709 5.12319 5.15969 5.24549 5.25720 5.31870 5.33341 5.40728 5.50812 5.57507 5.70852 5.74791 6.19548 6.32151 6.88933 6.90420 7.38656 8.17505 8.39873 9.31757 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002735 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.850881 B =10233.853722 C =10672.210248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.128 4.128 4 C 0.223 3.777 5 N -0.523 5.523 6 C 0.310 3.690 7 N -0.533 5.533 8 C 0.185 3.815 9 C -0.248 4.248 10 C 0.575 3.425 11 O -0.556 6.556 12 N -0.592 5.592 13 C 0.115 3.885 14 C -0.119 4.119 15 C -0.080 4.080 16 C 0.172 3.828 17 H 0.041 0.959 18 C -0.156 4.156 19 N -0.735 5.735 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.282 1.282 28 C -0.121 4.121 29 C 0.108 3.892 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.233 0.767 38 H 0.192 0.808 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.375 0.625 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.093 0.907 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 20.915 1.237 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.186 4.186 4 C 0.076 3.924 5 N -0.236 5.236 6 C 0.024 3.976 7 N -0.247 5.247 8 C 0.018 3.982 9 C -0.256 4.256 10 C 0.362 3.638 11 O -0.436 6.436 12 N -0.323 5.323 13 C -0.007 4.007 14 C -0.157 4.157 15 C -0.099 4.099 16 C 0.063 3.937 17 H 0.060 0.940 18 C -0.216 4.216 19 N -0.377 5.377 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.208 1.208 28 C -0.159 4.159 29 C -0.015 4.015 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.249 0.751 38 H 0.209 0.791 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.208 0.792 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.111 0.889 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.842 21.499 1.599 22.941 hybrid contribution -0.399 -1.640 -0.465 1.751 sum 7.443 19.860 1.134 21.239 Atomic orbital electron populations 1.21748 0.92075 1.01805 1.03622 1.20362 0.97603 0.97494 0.92112 1.21663 1.00445 0.93095 1.03382 1.21994 0.87482 0.88287 0.94591 1.68334 1.25975 1.30740 0.98578 1.25895 0.86983 0.86146 0.98560 1.68557 1.13306 1.14565 1.28249 1.23803 0.93182 0.95275 0.85944 1.21601 1.05392 1.02148 0.96433 1.17883 0.78191 0.82006 0.85703 1.90773 1.45393 1.54333 1.53091 1.48100 1.62261 1.06887 1.15100 1.21752 0.97423 0.99693 0.81800 1.21944 0.97996 0.96794 0.98985 1.21251 0.97419 0.96294 0.94923 1.20426 0.92577 0.87793 0.92856 0.94049 1.22380 0.99398 0.99317 1.00487 1.42678 1.70060 1.18493 1.06422 1.19557 1.28422 0.96098 0.92651 0.91100 1.25432 1.03730 1.01719 0.95806 1.69782 1.54485 1.34881 1.02780 0.85332 0.78649 0.79807 0.76710 1.20526 1.22376 1.20848 1.21843 0.97502 0.99311 0.97246 1.22021 0.96874 0.91186 0.91396 0.91226 0.90218 0.93807 0.89871 0.93649 0.90172 0.91519 0.75110 0.79102 0.89613 0.88984 0.89041 0.91380 0.91336 0.95318 0.91271 0.93965 0.79163 0.94191 0.92082 0.91956 0.88870 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.06 71.98 0.65 -1.79 16 2 C -0.06 -1.16 2.91 -11.54 -0.03 -1.20 16 3 C -0.13 -2.30 9.15 71.98 0.66 -1.64 16 4 C 0.22 4.99 5.52 42.92 0.24 5.23 16 5 N -0.52 -10.86 9.99 -187.07 -1.87 -12.73 16 6 C 0.31 5.55 12.27 180.84 2.22 7.77 16 7 N -0.53 -10.65 10.42 -198.98 -2.07 -12.72 16 8 C 0.18 3.61 8.75 85.07 0.74 4.35 16 9 C -0.25 -5.54 4.90 -19.91 -0.10 -5.64 16 10 C 0.58 13.85 6.34 86.78 0.55 14.40 16 11 O -0.56 -16.11 15.05 -3.91 -0.06 -16.17 16 12 N -0.59 -12.70 2.97 -822.31 -2.44 -15.14 16 13 C 0.11 2.29 6.42 86.36 0.55 2.84 16 14 C -0.12 -2.55 4.97 30.67 0.15 -2.40 16 15 C -0.08 -2.21 2.14 -10.77 -0.02 -2.23 16 16 C 0.17 6.19 2.72 44.99 0.12 6.31 16 17 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 18 C -0.16 -5.24 8.79 71.98 0.63 -4.60 16 19 N -0.74 -34.94 5.04 -322.95 -1.63 -36.57 16 20 C -0.24 -12.67 9.93 84.03 0.83 -11.84 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 24 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 28 C -0.12 -3.27 4.81 30.67 0.15 -3.12 16 29 C 0.11 2.26 5.59 86.36 0.48 2.74 16 30 H 0.07 1.24 7.98 -2.39 -0.02 1.22 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.08 1.97 5.76 -2.38 -0.01 1.95 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.23 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.19 2.83 7.44 -2.91 -0.02 2.81 16 39 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.09 1.90 7.04 -2.39 -0.02 1.89 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.52 6.51 -2.38 -0.02 1.50 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.87 6.46 -2.39 -0.02 1.85 16 46 H 0.04 1.44 6.46 -2.39 -0.02 1.43 16 47 H 0.37 18.91 6.04 -92.70 -0.56 18.35 16 48 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 49 H 0.06 1.73 6.51 -2.39 -0.02 1.71 16 50 H 0.06 2.04 6.46 -2.39 -0.02 2.02 16 51 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.08 1.70 4.73 -2.39 -0.01 1.69 16 Total: -1.00 -67.58 402.25 2.91 -64.67 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.37 Total: 33.13 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 8.30 Total: 5.45 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -7.73 Total: -134.65 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.06 Total: -16.17 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.58 2.91 -64.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.452 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds