Wall clock time and date at job start Wed Apr 1 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46685 * 2 1 4 4 N 1.46498 * 109.46976 * 240.00136 * 2 1 3 5 5 C 1.36939 * 120.00396 * 85.00138 * 4 2 1 6 6 H 1.07998 * 119.99640 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99431 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00268 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47035 * 90.00149 * 9 7 5 11 11 H 1.48503 * 109.47074 * 210.00029 * 9 7 5 12 12 H 1.48500 * 109.47102 * 330.00041 * 9 7 5 13 13 C 1.52999 * 109.46929 * 119.99856 * 2 1 3 14 14 H 1.09000 * 109.49454 * 179.97438 * 13 2 1 15 15 C 1.53040 * 109.49827 * 300.00176 * 13 2 1 16 16 C 1.53037 * 109.53581 * 181.31965 * 15 13 2 17 17 C 1.53192 * 109.31228 * 298.62993 * 16 15 13 18 18 N 1.46923 * 108.77468 * 54.64031 * 17 16 15 19 19 C 1.34774 * 120.63376 * 126.36326 * 18 17 16 20 20 O 1.21633 * 120.00040 * 185.39523 * 19 18 17 21 21 C 1.47164 * 119.99927 * 5.39898 * 19 18 17 22 22 C 1.38095 * 126.93694 * 268.53424 * 21 19 18 23 23 C 1.39539 * 105.70441 * 179.97438 * 22 21 19 24 24 N 1.31063 * 107.59867 * 359.97438 * 23 22 21 25 25 N 1.28447 * 110.96968 * 0.02562 * 24 23 22 26 26 C 1.46501 * 125.19737 * 180.02562 * 25 24 23 27 27 C 1.51271 * 109.37269 * 179.97438 * 23 22 21 28 28 C 1.54380 * 105.27356 * 17.14786 * 27 23 22 29 29 C 1.50853 * 144.41414 * 0.32074 * 22 21 19 30 30 C 1.46932 * 118.73569 * 306.64401 * 18 17 16 31 31 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47639 * 300.00185 * 1 2 3 33 33 H 1.09004 * 109.47452 * 60.00085 * 1 2 3 34 34 H 0.97000 * 119.99722 * 264.99545 * 4 2 1 35 35 H 0.96997 * 119.99589 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46054 * 61.29933 * 15 13 2 37 37 H 1.08999 * 109.44889 * 301.33089 * 15 13 2 38 38 H 1.09011 * 109.49574 * 178.68048 * 16 15 13 39 39 H 1.08997 * 109.49943 * 58.58462 * 16 15 13 40 40 H 1.08990 * 109.59010 * 294.85290 * 17 16 15 41 41 H 1.09006 * 109.58515 * 174.42225 * 17 16 15 42 42 H 1.08997 * 109.47184 * 85.08258 * 26 25 24 43 43 H 1.09004 * 109.47312 * 205.07775 * 26 25 24 44 44 H 1.08998 * 109.46979 * 325.08008 * 26 25 24 45 45 H 1.08999 * 110.28412 * 136.10194 * 27 23 22 46 46 H 1.09002 * 110.28416 * 258.19906 * 27 23 22 47 47 H 1.08997 * 110.78006 * 91.95867 * 28 27 23 48 48 H 1.08996 * 110.78056 * 215.21028 * 28 27 23 49 49 H 1.09000 * 110.30431 * 281.54570 * 29 22 21 50 50 H 1.09001 * 110.29816 * 43.69837 * 29 22 21 51 51 H 1.09008 * 109.58559 * 173.14260 * 30 18 17 52 52 H 1.08997 * 109.58475 * 293.56492 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6123 -0.6618 -3.5090 8 7 2.7375 -0.0052 -4.6429 9 14 3.0578 -2.4739 -3.4248 10 1 1.8612 -3.2932 -3.7441 11 1 4.1335 -2.7653 -4.4063 12 1 3.5331 -2.8037 -2.0571 13 6 2.0400 -0.7212 1.2493 14 1 3.1300 -0.7219 1.2494 15 6 1.5301 -0.0002 2.4992 16 6 2.0666 -0.7015 3.7491 17 6 1.5533 -2.1446 3.7802 18 7 1.9149 -2.8024 2.5172 19 6 2.5906 -3.9685 2.5191 20 8 2.9698 -4.4534 1.4701 21 6 2.8696 -4.6551 3.7905 22 6 3.9917 -4.5113 4.5825 23 6 3.7963 -5.3608 5.6721 24 7 2.6369 -5.9506 5.5119 25 7 2.0702 -5.5630 4.4263 26 6 0.7656 -6.0232 3.9439 27 6 4.9871 -5.2682 6.6005 28 6 5.7161 -3.9682 6.1983 29 6 5.3145 -3.7989 4.7182 30 6 1.5312 -2.1616 1.2518 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.0608 -0.4625 -5.4349 36 1 0.4404 -0.0205 2.5110 37 1 1.8740 1.0340 2.4873 38 1 1.7223 -0.1737 4.6386 39 1 3.1564 -0.7035 3.7258 40 1 0.4694 -2.1444 3.8948 41 1 2.0110 -2.6774 4.6138 42 1 -0.0228 -5.4285 4.4052 43 1 0.7186 -5.9111 2.8607 44 1 0.6305 -7.0723 4.2069 45 1 4.6546 -5.2099 7.6369 46 1 5.6427 -6.1278 6.4610 47 1 5.3603 -3.1259 6.7914 48 1 6.7953 -4.0826 6.3003 49 1 6.0612 -4.2615 4.0729 50 1 5.2023 -2.7430 4.4718 51 1 1.9744 -2.7056 0.4176 52 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698935325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:05 Heat of formation + Delta-G solvation = 41.478650 kcal Electronic energy + Delta-G solvation = -32109.486931 eV Core-core repulsion = 28110.157463 eV Total energy + Delta-G solvation = -3999.329469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.81517 -41.33328 -39.31082 -37.91133 -37.13999 -34.77830 -33.47161 -33.18828 -32.22111 -31.65061 -29.68652 -28.52731 -27.48599 -26.72683 -26.16470 -24.56777 -23.73280 -22.49901 -21.96216 -21.37967 -20.55602 -19.75014 -19.54546 -18.49207 -17.89170 -17.12230 -16.88268 -16.71084 -16.21862 -16.11505 -15.91923 -15.73100 -15.38859 -15.04916 -14.90082 -14.52174 -14.42908 -14.23773 -14.09719 -13.86489 -13.81059 -13.69441 -13.59314 -13.52722 -13.14235 -12.98387 -12.75822 -12.70617 -12.47081 -12.10436 -12.05944 -11.93792 -11.87844 -11.83411 -11.81150 -11.57069 -11.45030 -11.34533 -11.23606 -11.00665 -10.08041 -9.82834 -9.60190 -9.33539 -8.06253 -5.36628 0.53002 0.88804 1.30114 1.34093 1.39499 1.45131 1.52588 1.89805 2.41830 2.85710 3.15807 3.26161 3.50603 3.73633 3.83192 3.85411 3.87327 3.94660 4.02991 4.16052 4.18779 4.19908 4.21305 4.27720 4.30997 4.42932 4.47991 4.58412 4.61401 4.67059 4.74401 4.76321 4.81200 4.82447 4.85532 4.98750 5.02946 5.05367 5.06995 5.10984 5.20822 5.21218 5.31292 5.33591 5.37466 5.43337 5.46402 5.65754 5.76425 5.76980 6.09336 6.19765 6.76789 6.98139 7.05635 7.84193 7.99565 9.15703 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.003211 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.259950 B = 8717.142565 C = 9228.000018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.051 0.949 4 N -0.757 5.757 5 C -0.218 4.218 6 H 0.066 0.934 7 C -0.057 4.057 8 N -0.981 5.981 9 Si 0.937 3.063 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.271 1.271 13 C -0.096 4.096 14 H 0.051 0.949 15 C -0.107 4.107 16 C -0.125 4.125 17 C 0.105 3.895 18 N -0.587 5.587 19 C 0.588 3.412 20 O -0.574 6.574 21 C -0.021 4.021 22 C -0.201 4.201 23 C 0.000 4.000 24 N -0.283 5.283 25 N -0.274 5.274 26 C 0.082 3.918 27 C -0.025 4.025 28 C -0.101 4.101 29 C -0.051 4.051 30 C 0.117 3.883 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.360 0.640 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -7.533 31.742 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.069 0.931 4 N -0.401 5.401 5 C -0.349 4.349 6 H 0.084 0.916 7 C -0.248 4.248 8 N -0.632 5.632 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.221 1.221 12 H -0.197 1.197 13 C -0.116 4.116 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.163 4.163 17 C -0.016 4.016 18 N -0.318 5.318 19 C 0.373 3.627 20 O -0.453 6.453 21 C -0.148 4.148 22 C -0.212 4.212 23 C -0.159 4.159 24 N -0.113 5.113 25 N -0.062 5.062 26 C -0.057 4.057 27 C -0.064 4.064 28 C -0.139 4.139 29 C -0.089 4.089 30 C -0.005 4.005 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.193 0.807 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.071 0.929 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.158 -8.433 31.476 32.738 hybrid contribution 0.862 -0.736 -1.852 2.171 sum -2.296 -9.168 29.623 31.095 Atomic orbital electron populations 1.22393 0.96621 1.01436 1.01427 1.20449 0.93572 0.95072 0.84016 0.93136 1.43026 1.79975 1.09588 1.07495 1.19075 1.34138 0.94651 0.87020 0.91604 1.25268 1.02900 1.01095 0.95583 1.69839 1.55210 1.37166 1.01020 0.85680 0.77922 0.82515 0.77225 1.20506 1.22073 1.19650 1.21585 0.99777 0.93956 0.96289 0.93043 1.21614 1.02096 0.99414 0.91402 1.21890 1.00979 0.94019 0.99409 1.22042 1.01818 0.94033 0.83674 1.48187 1.53818 1.20731 1.09055 1.17438 0.77370 0.81374 0.86470 1.90861 1.52542 1.67797 1.34055 1.20274 0.95973 1.01707 0.96885 1.21602 0.97916 1.05185 0.96461 1.23438 0.94712 0.97707 1.00044 1.72630 1.10393 1.23764 1.04541 1.45972 1.16821 1.29450 1.14000 1.22438 0.78578 1.03962 1.00688 1.20610 0.88927 0.99651 0.97189 1.22365 1.01796 0.96926 0.92798 1.20511 0.89788 0.99381 0.99218 1.21681 1.00855 0.93237 0.84774 0.92946 0.89577 0.94948 0.80706 0.93414 0.89237 0.90290 0.87141 0.92451 0.88629 0.89843 0.86980 0.89693 0.86780 0.88452 0.88884 0.89274 0.87558 0.90991 0.90846 0.92855 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 8.79 71.98 0.63 -4.20 16 2 C 0.18 6.31 2.72 44.99 0.12 6.43 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.76 -36.08 4.85 -322.95 -1.57 -37.65 16 5 C -0.22 -12.57 10.41 84.03 0.87 -11.70 16 6 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 7 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 8 N -0.98 -64.36 13.97 21.65 0.30 -64.06 16 9 Si 0.94 49.46 27.73 68.60 1.90 51.36 16 10 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 12 H -0.27 -14.02 6.52 99.48 0.65 -13.37 16 13 C -0.10 -2.75 2.32 -10.86 -0.03 -2.77 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -1.97 4.78 30.62 0.15 -1.82 16 16 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 17 C 0.11 1.76 6.32 86.36 0.55 2.30 16 18 N -0.59 -15.01 2.98 -823.92 -2.45 -17.46 16 19 C 0.59 18.49 6.89 86.59 0.60 19.08 16 20 O -0.57 -24.02 16.52 -4.14 -0.07 -24.09 16 21 C -0.02 -0.55 4.78 40.70 0.19 -0.36 16 22 C -0.20 -4.85 6.79 -19.54 -0.13 -4.98 16 23 C 0.00 0.00 8.13 43.17 0.35 0.35 16 24 N -0.28 -6.80 11.91 -47.03 -0.56 -7.36 16 25 N -0.27 -6.37 3.75 -356.23 -1.34 -7.71 16 26 C 0.08 1.27 11.22 127.77 1.43 2.70 16 27 C -0.02 -0.32 6.76 30.50 0.21 -0.11 16 28 C -0.10 -1.06 7.06 31.50 0.22 -0.83 16 29 C -0.05 -0.93 6.75 30.33 0.20 -0.73 16 30 C 0.12 3.45 5.21 86.22 0.45 3.90 16 31 H 0.05 1.53 6.32 -2.39 -0.02 1.51 16 32 H 0.09 1.88 6.46 -2.39 -0.02 1.87 16 33 H 0.03 1.14 8.14 -2.38 -0.02 1.13 16 34 H 0.36 17.48 4.03 -92.71 -0.37 17.11 16 35 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.09 1.34 6.50 -2.39 -0.02 1.32 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 0.97 8.14 -2.38 -0.02 0.96 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.43 6.21 -2.38 -0.01 1.41 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.47 7.66 -2.38 -0.02 1.45 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.05 2.06 5.58 -2.38 -0.01 2.05 16 52 H 0.10 2.48 6.16 -2.39 -0.01 2.46 16 Total: -1.00 -83.21 400.30 3.19 -80.02 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.50 Total: 24.34 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.48 Total: 2.59 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -5.61 Total: -134.24 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.90 Total: 51.36 kcal Total: -83.21 3.19 -80.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698935325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.500 kcal (2) G-P(sol) polarization free energy of solvation -83.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds