Wall clock time and date at job start Wed Apr 1 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 N 1.46497 * 109.47476 * 119.99749 * 2 1 3 5 5 C 1.36940 * 120.00349 * 275.00363 * 4 2 1 6 6 H 1.08001 * 119.99244 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00203 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99958 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47129 * 90.00114 * 9 7 5 11 11 H 1.48502 * 109.47244 * 210.00440 * 9 7 5 12 12 H 1.48499 * 109.47015 * 329.99900 * 9 7 5 13 13 C 1.53000 * 109.47056 * 240.00179 * 2 1 3 14 14 H 1.09002 * 109.58342 * 51.10586 * 13 2 1 15 15 C 1.53194 * 109.58096 * 290.82356 * 13 2 1 16 16 C 1.53043 * 109.30754 * 185.43164 * 15 13 2 17 17 C 1.53036 * 109.53663 * 61.36980 * 16 15 13 18 18 C 1.53191 * 109.31440 * 298.62947 * 17 16 15 19 19 N 1.46923 * 109.70558 * 171.46375 * 13 2 1 20 20 C 1.34778 * 120.62972 * 353.46846 * 19 13 2 21 21 O 1.21632 * 119.99988 * 6.26332 * 20 19 13 22 22 C 1.47162 * 119.99980 * 186.27254 * 20 19 13 23 23 C 1.38405 * 126.88458 * 19.82868 * 22 20 19 24 24 C 1.39673 * 105.35874 * 179.97438 * 23 22 20 25 25 N 1.30861 * 107.86416 * 0.35205 * 24 23 22 26 26 N 1.28448 * 110.92607 * 359.77606 * 25 24 23 27 27 C 1.46504 * 125.19216 * 180.02562 * 26 25 24 28 28 C 1.53784 * 113.60985 * 29.22509 * 27 26 25 29 29 C 1.53951 * 87.01823 * 220.04559 * 28 27 26 30 30 C 1.53779 * 87.11319 * 25.36439 * 29 28 27 31 31 H 1.09008 * 109.46834 * 308.27145 * 1 2 3 32 32 H 1.08994 * 109.47422 * 68.27404 * 1 2 3 33 33 H 1.09003 * 109.46821 * 188.28091 * 1 2 3 34 34 H 0.96999 * 119.99892 * 94.99925 * 4 2 1 35 35 H 0.96992 * 119.99819 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.49993 * 305.38720 * 15 13 2 37 37 H 1.09005 * 109.49835 * 65.45808 * 15 13 2 38 38 H 1.09006 * 109.45860 * 181.38775 * 16 15 13 39 39 H 1.08992 * 109.46370 * 301.34460 * 16 15 13 40 40 H 1.09000 * 109.50136 * 58.58157 * 17 16 15 41 41 H 1.09001 * 109.49843 * 178.67999 * 17 16 15 42 42 H 1.09004 * 109.59133 * 174.42083 * 18 17 16 43 43 H 1.08995 * 109.59043 * 294.70918 * 18 17 16 44 44 H 1.08003 * 127.32131 * 0.02562 * 23 22 20 45 45 H 1.07999 * 126.07052 * 180.14771 * 24 23 22 46 46 H 1.08998 * 112.85042 * 160.41873 * 27 26 25 47 47 H 1.08993 * 113.61656 * 334.56997 * 28 27 26 48 48 H 1.08999 * 113.60907 * 105.47154 * 28 27 26 49 49 H 1.08998 * 113.53598 * 270.81552 * 29 28 27 50 50 H 1.08993 * 113.74190 * 139.94379 * 29 28 27 51 51 H 1.09000 * 113.61925 * 220.09431 * 30 29 28 52 52 H 1.09003 * 113.61370 * 89.18098 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6115 -0.6619 3.5092 8 7 2.9246 -1.9389 3.4501 9 14 2.7905 0.2702 5.1182 10 1 1.5228 0.1800 5.8862 11 1 3.8948 -0.3235 5.9140 12 1 3.0964 1.6951 4.8333 13 6 2.0400 -0.7212 -1.2493 14 1 1.5538 -0.3087 -2.1334 15 6 1.7274 -2.2171 -1.1421 16 6 2.3577 -2.9520 -2.3274 17 6 3.8770 -2.7723 -2.2916 18 6 4.2141 -1.2828 -2.4118 19 7 3.4948 -0.5490 -1.3616 20 6 4.1569 0.2665 -0.5171 21 8 3.5713 0.7791 0.4176 22 6 5.5883 0.5370 -0.7263 23 6 6.3031 0.3670 -1.8992 24 6 7.6099 0.7557 -1.5956 25 7 7.6401 1.1140 -0.3374 26 7 6.4792 0.9992 0.2003 27 6 6.1594 1.3161 1.5945 28 6 7.0476 2.4186 2.1948 29 6 7.0691 1.5849 3.4889 30 6 6.8006 0.3534 2.6078 31 1 -0.3633 0.6366 0.8069 32 1 -0.3634 0.3804 -0.9546 33 1 -0.3633 -1.0170 0.1480 34 1 2.2491 -1.6317 1.1526 35 1 3.2480 -2.3961 4.2421 36 1 2.1376 -2.6087 -0.2114 37 1 0.6475 -2.3649 -1.1545 38 1 2.1159 -4.0132 -2.2669 39 1 1.9654 -2.5430 -3.2584 40 1 4.2671 -3.1587 -1.3500 41 1 4.3272 -3.3153 -3.1226 42 1 5.2875 -1.1397 -2.2877 43 1 3.9075 -0.9166 -3.3916 44 1 5.9296 0.0105 -2.8478 45 1 8.4475 0.7568 -2.2773 46 1 5.0938 1.4764 1.7583 47 1 8.0222 2.5042 1.7143 48 1 6.5411 3.3779 2.3008 49 1 6.2524 1.8197 4.1715 50 1 8.0408 1.5653 3.9822 51 1 6.0950 -0.3520 3.0466 52 1 7.7076 -0.1267 2.2404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707431858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:18 Heat of formation + Delta-G solvation = 132.673027 kcal Electronic energy + Delta-G solvation = -33984.170216 eV Core-core repulsion = 29988.795232 eV Total energy + Delta-G solvation = -3995.374984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.34566 -39.96975 -38.17269 -36.84418 -35.29135 -32.77369 -32.20903 -31.42424 -30.39964 -29.49610 -28.07176 -25.64460 -25.47192 -24.90420 -23.91189 -23.33746 -22.27437 -21.61805 -20.40469 -20.12235 -19.00806 -18.50158 -17.12151 -16.76504 -15.99566 -15.63038 -15.44687 -15.29776 -14.70169 -14.46980 -14.36475 -14.15473 -13.96464 -13.67302 -13.25007 -13.07696 -12.87094 -12.69366 -12.52262 -12.32245 -12.15411 -12.10154 -11.97463 -11.88573 -11.37535 -11.12246 -10.99800 -10.81791 -10.74242 -10.65685 -10.57926 -10.54652 -10.42033 -10.25692 -10.10532 -10.02081 -9.79072 -9.38231 -8.88066 -8.72075 -8.58754 -8.36148 -7.94911 -6.62223 -5.53667 -2.75417 1.72816 2.67998 2.86147 3.45750 3.49577 3.56717 3.57371 3.80344 4.55420 4.71287 4.75762 4.78186 4.98074 4.99908 5.03900 5.10065 5.16687 5.17976 5.37864 5.42934 5.52919 5.55339 5.69512 5.72837 5.78611 5.80216 5.83721 5.88367 5.90076 5.95175 6.01060 6.02309 6.04920 6.13196 6.19020 6.19622 6.29957 6.34673 6.37679 6.44621 6.49214 6.57439 6.60452 6.78260 6.88918 7.01034 7.05479 7.12359 7.39463 7.88653 7.95077 8.39408 8.64461 8.84286 9.76078 10.34584 10.71268 11.70427 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.007224 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.003596 B = 3874.851755 C = 6492.964161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.166 3.834 3 H 0.085 0.915 4 N -0.702 5.702 5 C -0.176 4.176 6 H 0.064 0.936 7 C -0.028 4.028 8 N -0.944 5.944 9 Si 0.887 3.113 10 H -0.296 1.296 11 H -0.295 1.295 12 H -0.285 1.285 13 C 0.149 3.851 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.117 4.117 17 C -0.134 4.134 18 C 0.080 3.920 19 N -0.593 5.593 20 C 0.566 3.434 21 O -0.452 6.452 22 C -0.012 4.012 23 C -0.226 4.226 24 C -0.013 4.013 25 N -0.287 5.287 26 N -0.238 5.238 27 C 0.117 3.883 28 C -0.138 4.138 29 C -0.137 4.137 30 C -0.141 4.141 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.379 0.621 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.166 0.834 45 H 0.179 0.821 46 H 0.158 0.842 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 2.272 -13.686 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.056 3.944 3 H 0.102 0.898 4 N -0.344 5.344 5 C -0.308 4.308 6 H 0.082 0.918 7 C -0.221 4.221 8 N -0.597 5.597 9 Si 0.720 3.280 10 H -0.225 1.225 11 H -0.222 1.222 12 H -0.211 1.211 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.172 4.172 16 C -0.155 4.155 17 C -0.173 4.173 18 C -0.043 4.043 19 N -0.329 5.329 20 C 0.351 3.649 21 O -0.323 6.323 22 C -0.142 4.142 23 C -0.254 4.254 24 C -0.188 4.188 25 N -0.119 5.119 26 N -0.025 5.025 27 C 0.017 3.983 28 C -0.176 4.176 29 C -0.175 4.175 30 C -0.179 4.179 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.215 0.785 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.184 0.816 45 H 0.196 0.804 46 H 0.175 0.825 47 H 0.115 0.885 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.252 3.152 -12.012 13.904 hybrid contribution -0.307 -0.439 0.166 0.560 sum 5.945 2.713 -11.846 13.529 Atomic orbital electron populations 1.22581 1.00120 1.01060 0.99173 1.20778 0.90249 0.97978 0.85393 0.89790 1.42415 1.77275 1.09697 1.05026 1.19078 1.32143 0.93164 0.86412 0.91834 1.24514 1.04370 0.95940 0.97247 1.69633 1.53574 1.08472 1.27979 0.86444 0.77219 0.78902 0.85401 1.22461 1.22194 1.21104 1.21645 0.78448 0.95914 0.99427 0.91788 1.21987 1.00774 0.95114 0.99292 1.21511 0.95216 1.00242 0.98498 1.21907 0.96791 0.96120 1.02460 1.22498 0.99524 0.91678 0.90553 1.47455 1.07631 1.44856 1.32943 1.17003 0.83903 0.81349 0.82676 1.91056 1.65728 1.48928 1.26540 1.21856 0.93935 1.07542 0.90900 1.22478 0.94107 1.09972 0.98832 1.23465 0.97944 1.04718 0.92705 1.73029 1.06534 1.21410 1.10944 1.45854 1.03675 1.42852 1.10115 1.23867 1.03381 0.97877 0.73204 1.23317 1.00643 0.97284 0.96340 1.22703 1.02538 0.96166 0.96098 1.23306 1.01276 0.97573 0.95734 0.92998 0.94931 0.93524 0.78541 0.94288 0.90007 0.91089 0.92187 0.92449 0.91276 0.91425 0.87233 0.92035 0.81645 0.80397 0.82459 0.88504 0.90745 0.89482 0.90644 0.89095 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.15 37.16 0.34 -2.70 16 2 C 0.17 3.29 1.88 -67.93 -0.13 3.16 16 3 H 0.08 1.84 5.74 -52.76 -0.30 1.54 16 4 N -0.70 -16.90 3.76 -53.43 -0.20 -17.10 16 5 C -0.18 -4.78 8.08 -15.06 -0.12 -4.90 16 6 H 0.06 1.77 7.83 -52.49 -0.41 1.35 16 7 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 8 N -0.94 -28.17 13.06 55.49 0.72 -27.45 16 9 Si 0.89 22.58 29.55 -169.99 -5.02 17.56 16 10 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.15 2.41 2.71 -67.60 -0.18 2.23 16 14 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 15 C -0.13 -2.05 4.90 -26.61 -0.13 -2.18 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.58 16 17 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 18 C 0.08 0.98 5.25 -3.71 -0.02 0.97 16 19 N -0.59 -9.50 2.97 -166.57 -0.50 -10.00 16 20 C 0.57 10.67 7.35 -12.64 -0.09 10.58 16 21 O -0.45 -9.97 7.69 5.25 0.04 -9.93 16 22 C -0.01 -0.21 6.63 -82.06 -0.54 -0.76 16 23 C -0.23 -3.09 8.72 -38.98 -0.34 -3.43 16 24 C -0.01 -0.17 12.03 -17.43 -0.21 -0.38 16 25 N -0.29 -4.65 11.01 30.59 0.34 -4.31 16 26 N -0.24 -4.19 3.49 -49.90 -0.17 -4.37 16 27 C 0.12 2.10 4.41 -67.11 -0.30 1.80 16 28 C -0.14 -2.05 7.69 -25.83 -0.20 -2.25 16 29 C -0.14 -2.05 8.09 -25.83 -0.21 -2.26 16 30 C -0.14 -2.46 7.88 -25.92 -0.20 -2.67 16 31 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.05 0.85 7.24 -51.93 -0.38 0.47 16 34 H 0.38 9.81 5.47 -40.82 -0.22 9.58 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.57 5.94 -51.93 -0.31 1.26 16 37 H 0.07 1.04 7.18 -51.93 -0.37 0.67 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.11 1.32 3.56 -51.93 -0.18 1.13 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.17 1.75 5.72 -52.48 -0.30 1.45 16 45 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.16 3.30 5.99 -51.93 -0.31 2.99 16 47 H 0.10 1.40 7.52 -51.93 -0.39 1.01 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 52 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -31.08 389.36 -9.90 -40.98 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -8.23 Total: 15.79 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.75 Total: -7.03 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.19 Total: -63.23 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.04 Total: -9.93 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.08 -9.90 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.654 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds