Wall clock time and date at job start Wed Apr 1 2020 05:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 N 1.46503 * 109.46529 * 119.99818 * 2 1 3 5 5 C 1.36934 * 120.00123 * 287.84427 * 4 2 1 6 6 H 1.08003 * 119.99907 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00364 * 180.02562 * 5 4 2 8 8 N 1.31613 * 119.99972 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99625 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47371 * 89.99474 * 9 7 5 11 11 H 1.48501 * 109.46995 * 209.99688 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99678 * 9 7 5 13 13 C 1.52998 * 109.47083 * 239.99624 * 2 1 3 14 14 H 1.09004 * 109.58312 * 290.57911 * 13 2 1 15 15 C 1.53192 * 109.58667 * 50.86515 * 13 2 1 16 16 C 1.53046 * 109.31044 * 174.42039 * 15 13 2 17 17 C 1.53043 * 109.53885 * 298.63463 * 16 15 13 18 18 C 1.53198 * 109.30870 * 61.36463 * 17 16 15 19 19 N 1.46923 * 108.89456 * 305.29219 * 18 17 16 20 20 C 1.34778 * 120.63020 * 233.67337 * 19 18 17 21 21 O 1.21624 * 119.99994 * 171.00707 * 20 19 18 22 22 C 1.47167 * 119.99851 * 351.00886 * 20 19 18 23 23 C 1.38393 * 126.88593 * 331.62406 * 22 20 19 24 24 C 1.39678 * 105.36095 * 179.91539 * 23 22 20 25 25 N 1.30864 * 107.85978 * 0.35297 * 24 23 22 26 26 N 1.28444 * 110.92585 * 359.77380 * 25 24 23 27 27 C 1.46504 * 125.18991 * 180.02562 * 26 25 24 28 28 C 1.53777 * 113.61245 * 42.00870 * 27 26 25 29 29 C 1.53953 * 87.01746 * 220.04792 * 28 27 26 30 30 C 1.53778 * 113.60963 * 304.40350 * 27 26 25 31 31 H 1.09005 * 109.46511 * 62.13449 * 1 2 3 32 32 H 1.09000 * 109.46993 * 182.13478 * 1 2 3 33 33 H 1.08994 * 109.47424 * 302.13687 * 1 2 3 34 34 H 0.97000 * 119.99829 * 107.85509 * 4 2 1 35 35 H 0.97006 * 119.99637 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.49904 * 54.47036 * 15 13 2 37 37 H 1.08991 * 109.49797 * 294.37134 * 15 13 2 38 38 H 1.08994 * 109.45611 * 178.61710 * 16 15 13 39 39 H 1.09004 * 109.45762 * 58.65709 * 16 15 13 40 40 H 1.08995 * 109.49817 * 301.41745 * 17 16 15 41 41 H 1.08995 * 109.49399 * 181.31632 * 17 16 15 42 42 H 1.08996 * 109.58242 * 65.15561 * 18 17 16 43 43 H 1.09004 * 109.58155 * 185.42989 * 18 17 16 44 44 H 1.08007 * 127.32156 * 359.97438 * 23 22 20 45 45 H 1.07998 * 126.06834 * 180.10359 * 24 23 22 46 46 H 1.08994 * 112.84920 * 173.20981 * 27 26 25 47 47 H 1.08997 * 113.61573 * 334.56995 * 28 27 26 48 48 H 1.09001 * 113.61138 * 105.47718 * 28 27 26 49 49 H 1.08999 * 113.54002 * 270.80887 * 29 28 27 50 50 H 1.09010 * 113.66710 * 139.93288 * 29 28 27 51 51 H 1.09005 * 113.61309 * 254.52418 * 30 27 26 52 52 H 1.08994 * 113.62037 * 25.35007 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.9038 -0.0963 2.4246 6 1 1.4532 0.8814 2.5116 7 6 2.3669 -0.7504 3.5580 8 7 2.2564 -0.1793 4.7387 9 14 3.1468 -2.4411 3.4075 10 1 4.6095 -2.2946 3.1974 11 1 2.9002 -3.2126 4.6522 12 1 2.5506 -3.1602 2.2531 13 6 2.0400 -0.7213 -1.2492 14 1 1.8215 -1.7864 -1.1709 15 6 1.3524 -0.1458 -2.4912 16 6 1.9661 -0.7723 -3.7455 17 6 3.4554 -0.4265 -3.8141 18 6 4.1668 -1.0052 -2.5869 19 7 3.4931 -0.5214 -1.3742 20 6 4.1916 0.0943 -0.3998 21 8 3.6066 0.6342 0.5197 22 6 5.6624 0.1133 -0.4485 23 6 6.4864 -0.8317 -1.0343 24 6 7.7877 -0.3714 -0.8205 25 7 7.7116 0.7518 -0.1532 26 7 6.4879 1.0643 0.0808 27 6 6.0451 2.2588 0.8043 28 6 6.8236 3.5306 0.4284 29 6 6.7906 3.8959 1.9236 30 6 6.6577 2.3906 2.2086 31 1 -0.3632 0.4804 -0.9086 32 1 -0.3633 -1.0270 0.0383 33 1 -0.3634 0.5466 0.8701 34 1 2.4227 -1.5688 1.1182 35 1 2.5803 -0.6363 5.5307 36 1 1.4939 0.9346 -2.5177 37 1 0.2870 -0.3728 -2.4553 38 1 1.4618 -0.3827 -4.6298 39 1 1.8460 -1.8550 -3.7065 40 1 3.5772 0.6565 -3.8280 41 1 3.8866 -0.8533 -4.7195 42 1 4.1237 -2.0939 -2.6192 43 1 5.2074 -0.6808 -2.5810 44 1 6.1869 -1.7330 -1.5486 45 1 8.6956 -0.8582 -1.1445 46 1 4.9630 2.3878 0.7861 47 1 7.8262 3.3328 0.0493 48 1 6.2593 4.2175 -0.2024 49 1 5.9124 4.4740 2.2111 50 1 7.7219 4.3289 2.2889 51 1 5.9597 2.1586 3.0131 52 1 7.6142 1.8794 2.3176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707431860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:23 Heat of formation + Delta-G solvation = 125.354922 kcal Electronic energy + Delta-G solvation = -33574.848961 eV Core-core repulsion = 29579.156640 eV Total energy + Delta-G solvation = -3995.692321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.41776 -40.11037 -38.34066 -37.01950 -35.45294 -33.00360 -32.25345 -31.55051 -30.50533 -30.12678 -28.18081 -25.74414 -25.65124 -25.08476 -24.32819 -22.67634 -22.40521 -21.64062 -20.53276 -20.00563 -19.61191 -18.70668 -17.58038 -16.87091 -16.04844 -15.78398 -15.54730 -15.38225 -14.91543 -14.66236 -14.51279 -14.21377 -14.00515 -13.73985 -13.46066 -13.26778 -12.96186 -12.78050 -12.62233 -12.49546 -12.48005 -12.34766 -12.19828 -12.15965 -11.48072 -11.43367 -11.17444 -11.03822 -10.92549 -10.77330 -10.73459 -10.70106 -10.54942 -10.44357 -10.26858 -10.13953 -9.87518 -9.37125 -8.95770 -8.79664 -8.73518 -8.44187 -8.20272 -6.89147 -5.54354 -2.82603 1.65529 2.56846 2.79865 3.31368 3.46548 3.50696 3.54416 3.57517 4.40112 4.57912 4.59463 4.76142 4.78027 4.81645 4.83995 4.87929 4.95044 5.02869 5.06741 5.32687 5.33744 5.39915 5.52630 5.59535 5.62493 5.65819 5.70433 5.76211 5.76606 5.78137 5.81000 5.84970 5.88290 5.91659 5.98828 6.00992 6.02659 6.03817 6.18781 6.26698 6.35866 6.36321 6.40133 6.54469 6.68950 6.79641 6.98210 7.02256 7.27506 7.71397 8.20740 8.30045 8.62124 8.68891 9.42892 10.16472 10.36631 11.65760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.006536 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.967073 B = 4282.695880 C = 6316.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.182 3.818 3 H 0.075 0.925 4 N -0.726 5.726 5 C -0.190 4.190 6 H 0.086 0.914 7 C -0.005 4.005 8 N -0.945 5.945 9 Si 0.876 3.124 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.283 1.283 13 C 0.146 3.854 14 H 0.068 0.932 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.094 3.906 19 N -0.604 5.604 20 C 0.553 3.447 21 O -0.438 6.438 22 C -0.013 4.013 23 C -0.214 4.214 24 C -0.009 4.009 25 N -0.285 5.285 26 N -0.243 5.243 27 C 0.120 3.880 28 C -0.140 4.140 29 C -0.135 4.135 30 C -0.140 4.140 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.353 0.647 35 H 0.253 0.747 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.157 0.843 45 H 0.180 0.820 46 H 0.145 0.855 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 2.366 -19.060 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.073 3.927 3 H 0.092 0.908 4 N -0.368 5.368 5 C -0.320 4.320 6 H 0.104 0.896 7 C -0.199 4.199 8 N -0.596 5.596 9 Si 0.708 3.292 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.210 1.210 13 C 0.043 3.957 14 H 0.086 0.914 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.171 4.171 18 C -0.029 4.029 19 N -0.341 5.341 20 C 0.337 3.663 21 O -0.306 6.306 22 C -0.143 4.143 23 C -0.243 4.243 24 C -0.185 4.185 25 N -0.117 5.117 26 N -0.030 5.030 27 C 0.020 3.980 28 C -0.179 4.179 29 C -0.173 4.173 30 C -0.178 4.178 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.185 0.815 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.175 0.825 45 H 0.197 0.803 46 H 0.162 0.838 47 H 0.114 0.886 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.095 0.905 51 H 0.107 0.893 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.146 3.819 -17.767 19.527 hybrid contribution 0.247 -2.359 -0.385 2.403 sum 7.393 1.460 -18.152 19.654 Atomic orbital electron populations 1.22549 0.99135 1.00909 1.00339 1.20524 0.90797 0.97476 0.83909 0.90774 1.42681 1.72488 1.18297 1.03330 1.18867 1.30168 1.00963 0.82047 0.89592 1.24498 1.02262 0.97629 0.95461 1.69678 1.54304 1.38227 0.97408 0.86664 0.79646 0.86700 0.76189 1.21840 1.22279 1.20963 1.21644 0.78032 0.99745 0.96261 0.91445 1.22002 1.00019 1.00901 0.93667 1.21536 0.95412 1.00823 0.97947 1.21909 0.96076 1.01510 0.97616 1.22119 0.98130 0.98629 0.84059 1.47610 1.07838 1.60263 1.18369 1.17068 0.84049 0.82139 0.83067 1.91199 1.67795 1.39957 1.31664 1.21813 0.93809 0.94347 1.04315 1.22263 0.92612 1.01797 1.07636 1.23461 0.98198 0.94369 1.02499 1.73016 1.02559 1.17900 1.18242 1.45768 1.02013 1.17714 1.37528 1.23630 1.01513 0.80237 0.92661 1.23387 1.01428 0.95299 0.97740 1.22712 1.02920 0.96341 0.95338 1.23306 1.02113 0.96413 0.95971 0.94094 0.93758 0.92198 0.81475 0.93687 0.91403 0.90282 0.91963 0.91927 0.91687 0.91118 0.91882 0.88338 0.82507 0.80270 0.83783 0.88631 0.90738 0.89305 0.90483 0.89335 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 8.77 37.16 0.33 -2.65 16 2 C 0.18 3.51 1.81 -67.93 -0.12 3.39 16 3 H 0.07 1.59 6.18 -51.93 -0.32 1.27 16 4 N -0.73 -17.43 3.05 -53.42 -0.16 -17.60 16 5 C -0.19 -5.45 8.91 -15.06 -0.13 -5.58 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 7 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 8 N -0.95 -30.75 13.97 55.49 0.78 -29.98 16 9 Si 0.88 23.72 27.74 -169.99 -4.71 19.01 16 10 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 11 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 12 H -0.28 -7.24 6.52 56.52 0.37 -6.87 16 13 C 0.15 2.23 2.58 -67.45 -0.17 2.06 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.13 -1.49 4.53 -26.61 -0.12 -1.61 16 16 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 17 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 18 C 0.09 1.04 5.17 -3.71 -0.02 1.02 16 19 N -0.60 -9.11 2.98 -166.36 -0.50 -9.60 16 20 C 0.55 10.13 7.14 -12.63 -0.09 10.04 16 21 O -0.44 -9.65 8.45 5.26 0.04 -9.61 16 22 C -0.01 -0.22 6.36 -82.06 -0.52 -0.75 16 23 C -0.21 -3.04 8.59 -38.99 -0.33 -3.38 16 24 C -0.01 -0.13 12.03 -17.43 -0.21 -0.34 16 25 N -0.29 -4.52 11.15 30.59 0.34 -4.18 16 26 N -0.24 -4.10 3.46 -49.91 -0.17 -4.27 16 27 C 0.12 1.91 4.34 -67.12 -0.29 1.62 16 28 C -0.14 -1.75 7.76 -25.83 -0.20 -1.95 16 29 C -0.14 -1.63 8.09 -25.83 -0.21 -1.84 16 30 C -0.14 -2.17 7.81 -25.92 -0.20 -2.37 16 31 H 0.04 0.58 6.32 -51.93 -0.33 0.25 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.19 8.01 -51.93 -0.42 0.78 16 34 H 0.35 8.71 5.56 -40.82 -0.23 8.48 16 35 H 0.25 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.87 6.65 -51.93 -0.35 0.52 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.08 4.42 -51.93 -0.23 0.85 16 44 H 0.16 1.81 6.60 -52.48 -0.35 1.46 16 45 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.14 2.55 6.29 -51.93 -0.33 2.23 16 47 H 0.10 1.20 7.73 -51.93 -0.40 0.80 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 51 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 52 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -34.65 390.82 -9.66 -44.31 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.45 Total: 11.28 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.72 Total: -5.26 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.28 Total: -65.63 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.04 Total: -9.61 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.71 Total: 19.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.65 -9.66 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.666 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds