Wall clock time and date at job start Wed Apr 1 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 N 1.46503 * 109.46529 * 119.99818 * 2 1 3 5 5 C 1.36934 * 120.00123 * 287.84427 * 4 2 1 6 6 H 1.08003 * 119.99907 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00364 * 180.02562 * 5 4 2 8 8 N 1.31613 * 119.99972 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99625 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47371 * 89.99474 * 9 7 5 11 11 H 1.48501 * 109.46995 * 209.99688 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99678 * 9 7 5 13 13 C 1.52998 * 109.47083 * 239.99624 * 2 1 3 14 14 H 1.09004 * 109.58312 * 290.57911 * 13 2 1 15 15 C 1.53192 * 109.58667 * 50.86515 * 13 2 1 16 16 C 1.53046 * 109.31044 * 174.42039 * 15 13 2 17 17 C 1.53043 * 109.53885 * 298.63463 * 16 15 13 18 18 C 1.53198 * 109.30870 * 61.36463 * 17 16 15 19 19 N 1.46923 * 108.89456 * 305.29219 * 18 17 16 20 20 C 1.34778 * 120.63020 * 233.67337 * 19 18 17 21 21 O 1.21624 * 119.99994 * 171.00707 * 20 19 18 22 22 C 1.47167 * 119.99851 * 351.00886 * 20 19 18 23 23 C 1.38393 * 126.88593 * 331.62406 * 22 20 19 24 24 C 1.39678 * 105.36095 * 179.91539 * 23 22 20 25 25 N 1.30864 * 107.85978 * 0.35297 * 24 23 22 26 26 N 1.28444 * 110.92585 * 359.77380 * 25 24 23 27 27 C 1.46504 * 125.18991 * 180.02562 * 26 25 24 28 28 C 1.53777 * 113.61245 * 42.00870 * 27 26 25 29 29 C 1.53953 * 87.01746 * 220.04792 * 28 27 26 30 30 C 1.53778 * 113.60963 * 304.40350 * 27 26 25 31 31 H 1.09005 * 109.46511 * 62.13449 * 1 2 3 32 32 H 1.09000 * 109.46993 * 182.13478 * 1 2 3 33 33 H 1.08994 * 109.47424 * 302.13687 * 1 2 3 34 34 H 0.97000 * 119.99829 * 107.85509 * 4 2 1 35 35 H 0.97006 * 119.99637 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.49904 * 54.47036 * 15 13 2 37 37 H 1.08991 * 109.49797 * 294.37134 * 15 13 2 38 38 H 1.08994 * 109.45611 * 178.61710 * 16 15 13 39 39 H 1.09004 * 109.45762 * 58.65709 * 16 15 13 40 40 H 1.08995 * 109.49817 * 301.41745 * 17 16 15 41 41 H 1.08995 * 109.49399 * 181.31632 * 17 16 15 42 42 H 1.08996 * 109.58242 * 65.15561 * 18 17 16 43 43 H 1.09004 * 109.58155 * 185.42989 * 18 17 16 44 44 H 1.08007 * 127.32156 * 359.97438 * 23 22 20 45 45 H 1.07998 * 126.06834 * 180.10359 * 24 23 22 46 46 H 1.08994 * 112.84920 * 173.20981 * 27 26 25 47 47 H 1.08997 * 113.61573 * 334.56995 * 28 27 26 48 48 H 1.09001 * 113.61138 * 105.47718 * 28 27 26 49 49 H 1.08999 * 113.54002 * 270.80887 * 29 28 27 50 50 H 1.09010 * 113.66710 * 139.93288 * 29 28 27 51 51 H 1.09005 * 113.61309 * 254.52418 * 30 27 26 52 52 H 1.08994 * 113.62037 * 25.35007 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.9038 -0.0963 2.4246 6 1 1.4532 0.8814 2.5116 7 6 2.3669 -0.7504 3.5580 8 7 2.2564 -0.1793 4.7387 9 14 3.1468 -2.4411 3.4075 10 1 4.6095 -2.2946 3.1974 11 1 2.9002 -3.2126 4.6522 12 1 2.5506 -3.1602 2.2531 13 6 2.0400 -0.7213 -1.2492 14 1 1.8215 -1.7864 -1.1709 15 6 1.3524 -0.1458 -2.4912 16 6 1.9661 -0.7723 -3.7455 17 6 3.4554 -0.4265 -3.8141 18 6 4.1668 -1.0052 -2.5869 19 7 3.4931 -0.5214 -1.3742 20 6 4.1916 0.0943 -0.3998 21 8 3.6066 0.6342 0.5197 22 6 5.6624 0.1133 -0.4485 23 6 6.4864 -0.8317 -1.0343 24 6 7.7877 -0.3714 -0.8205 25 7 7.7116 0.7518 -0.1532 26 7 6.4879 1.0643 0.0808 27 6 6.0451 2.2588 0.8043 28 6 6.8236 3.5306 0.4284 29 6 6.7906 3.8959 1.9236 30 6 6.6577 2.3906 2.2086 31 1 -0.3632 0.4804 -0.9086 32 1 -0.3633 -1.0270 0.0383 33 1 -0.3634 0.5466 0.8701 34 1 2.4227 -1.5688 1.1182 35 1 2.5803 -0.6363 5.5307 36 1 1.4939 0.9346 -2.5177 37 1 0.2870 -0.3728 -2.4553 38 1 1.4618 -0.3827 -4.6298 39 1 1.8460 -1.8550 -3.7065 40 1 3.5772 0.6565 -3.8280 41 1 3.8866 -0.8533 -4.7195 42 1 4.1237 -2.0939 -2.6192 43 1 5.2074 -0.6808 -2.5810 44 1 6.1869 -1.7330 -1.5486 45 1 8.6956 -0.8582 -1.1445 46 1 4.9630 2.3878 0.7861 47 1 7.8262 3.3328 0.0493 48 1 6.2593 4.2175 -0.2024 49 1 5.9124 4.4740 2.2111 50 1 7.7219 4.3289 2.2889 51 1 5.9597 2.1586 3.0131 52 1 7.6142 1.8794 2.3176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707431860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:21 Heat of formation + Delta-G solvation = 103.305154 kcal Electronic energy + Delta-G solvation = -33575.805111 eV Core-core repulsion = 29579.156640 eV Total energy + Delta-G solvation = -3996.648470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -43.59298 -41.37687 -39.48847 -38.23368 -37.10085 -34.42361 -33.85655 -32.70427 -32.08296 -31.48966 -29.62066 -26.94929 -26.81154 -26.31346 -25.82243 -24.15040 -23.57737 -22.85771 -21.72380 -21.35310 -20.83710 -19.93244 -19.48749 -18.19701 -17.29313 -17.00091 -16.85785 -16.60771 -16.51880 -16.02051 -15.76902 -15.54153 -15.37446 -14.84837 -14.73735 -14.50178 -14.31837 -14.23843 -13.98532 -13.84702 -13.78779 -13.64515 -13.61519 -13.30029 -13.15634 -12.97091 -12.63161 -12.36343 -12.25391 -12.13128 -11.92900 -11.84056 -11.72466 -11.70497 -11.69262 -11.49212 -11.34750 -11.23982 -10.94672 -10.19543 -9.99408 -9.81200 -9.51828 -8.93612 -7.90867 -5.13824 0.41214 1.24977 1.30935 1.36125 1.39069 1.70659 2.13362 2.24689 2.51121 3.26956 3.41748 3.43329 3.45424 3.62211 3.67194 3.72385 3.86521 3.94304 4.00028 4.11171 4.22375 4.25513 4.33519 4.34299 4.47222 4.55667 4.59902 4.61745 4.69714 4.71922 4.78112 4.83402 4.84445 4.85248 4.90262 4.91994 4.92500 5.01670 5.07145 5.13665 5.20282 5.28080 5.28300 5.42474 5.47018 5.55694 5.63192 5.82371 5.84856 5.89367 6.31409 6.47983 7.13671 7.20098 7.36765 7.98714 8.16142 9.33246 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.006536 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.967073 B = 4282.695880 C = 6316.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.724 5.724 5 C -0.152 4.152 6 H 0.046 0.954 7 C -0.079 4.079 8 N -0.997 5.997 9 Si 0.943 3.057 10 H -0.303 1.303 11 H -0.300 1.300 12 H -0.254 1.254 13 C 0.150 3.850 14 H 0.074 0.926 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.087 3.913 19 N -0.599 5.599 20 C 0.549 3.451 21 O -0.496 6.496 22 C -0.050 4.050 23 C -0.198 4.198 24 C -0.005 4.005 25 N -0.300 5.300 26 N -0.257 5.257 27 C 0.108 3.892 28 C -0.120 4.120 29 C -0.119 4.119 30 C -0.147 4.147 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.352 0.648 35 H 0.247 0.753 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.187 0.813 45 H 0.220 0.780 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.050 0.950 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.121 0.499 -23.568 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.365 5.365 5 C -0.285 4.285 6 H 0.064 0.936 7 C -0.268 4.268 8 N -0.652 5.652 9 Si 0.774 3.226 10 H -0.232 1.232 11 H -0.227 1.227 12 H -0.179 1.179 13 C 0.047 3.953 14 H 0.092 0.908 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.165 4.165 18 C -0.035 4.035 19 N -0.334 5.334 20 C 0.334 3.666 21 O -0.369 6.369 22 C -0.179 4.179 23 C -0.226 4.226 24 C -0.181 4.181 25 N -0.132 5.132 26 N -0.043 5.043 27 C 0.007 3.993 28 C -0.158 4.158 29 C -0.157 4.157 30 C -0.186 4.186 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.184 0.816 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.204 0.796 45 H 0.237 0.763 46 H 0.133 0.867 47 H 0.119 0.881 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.069 0.931 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.328 1.926 -22.399 23.975 hybrid contribution -0.114 -1.711 0.887 1.930 sum 8.214 0.216 -21.512 23.028 Atomic orbital electron populations 1.22405 0.97577 1.01187 1.00734 1.20624 0.91681 0.96432 0.84246 0.93455 1.42626 1.72559 1.18163 1.03161 1.18713 1.26849 0.98875 0.84014 0.93562 1.25162 1.04547 1.01819 0.95258 1.69863 1.57008 1.40123 0.98164 0.85551 0.77788 0.82508 0.76761 1.23159 1.22735 1.17941 1.21591 0.78575 0.99519 0.95644 0.90812 1.21975 1.00561 1.00344 0.93086 1.21530 0.95261 1.01370 0.97001 1.21896 0.96057 1.00914 0.97666 1.22437 0.98250 0.99866 0.82908 1.47759 1.07798 1.59049 1.18827 1.17442 0.84848 0.81385 0.82904 1.91182 1.68937 1.42770 1.34020 1.21971 0.93545 0.95938 1.06439 1.22659 0.92231 1.01603 1.06138 1.24188 0.99481 0.93407 1.00982 1.73003 1.02139 1.19169 1.18918 1.45831 1.02386 1.18021 1.38098 1.23587 1.00463 0.82057 0.93178 1.23281 1.01112 0.93329 0.98065 1.22687 1.04263 0.93704 0.95017 1.23303 1.00875 0.99486 0.94887 0.90211 0.93093 0.95620 0.81601 0.94382 0.92339 0.88994 0.89893 0.90751 0.92818 0.88077 0.89781 0.88070 0.79579 0.76317 0.86724 0.88085 0.89200 0.89058 0.88004 0.93143 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 8.77 71.98 0.63 -4.95 16 2 C 0.18 6.97 1.81 44.99 0.08 7.05 16 3 H 0.05 2.16 6.18 -2.39 -0.01 2.14 16 4 N -0.72 -35.65 3.05 -322.93 -0.98 -36.64 16 5 C -0.15 -9.23 8.91 84.03 0.75 -8.48 16 6 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 8 N -1.00 -68.65 13.97 21.65 0.30 -68.35 16 9 Si 0.94 50.83 27.74 68.60 1.90 52.73 16 10 H -0.30 -16.81 7.11 99.48 0.71 -16.10 16 11 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 12 H -0.25 -12.32 6.52 99.48 0.65 -11.67 16 13 C 0.15 4.31 2.58 44.92 0.12 4.43 16 14 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 15 C -0.12 -2.48 4.53 30.67 0.14 -2.34 16 16 C -0.11 -1.61 5.88 30.62 0.18 -1.43 16 17 C -0.13 -1.81 6.08 30.67 0.19 -1.62 16 18 C 0.09 1.62 5.17 86.36 0.45 2.06 16 19 N -0.60 -17.16 2.98 -798.50 -2.38 -19.54 16 20 C 0.55 20.42 7.14 86.59 0.62 21.04 16 21 O -0.50 -23.24 8.45 -4.11 -0.03 -23.27 16 22 C -0.05 -1.69 6.36 40.78 0.26 -1.43 16 23 C -0.20 -5.10 8.59 22.65 0.19 -4.91 16 24 C 0.00 -0.12 12.03 85.18 1.02 0.91 16 25 N -0.30 -9.19 11.15 -57.14 -0.64 -9.83 16 26 N -0.26 -8.75 3.46 -311.82 -1.08 -9.83 16 27 C 0.11 3.65 4.34 45.51 0.20 3.84 16 28 C -0.12 -2.96 7.76 31.18 0.24 -2.72 16 29 C -0.12 -2.90 8.09 31.18 0.25 -2.65 16 30 C -0.15 -4.90 7.81 31.12 0.24 -4.66 16 31 H 0.08 2.15 6.32 -2.38 -0.02 2.13 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.02 1.04 8.01 -2.39 -0.02 1.02 16 34 H 0.35 17.31 5.56 -92.71 -0.52 16.79 16 35 H 0.25 16.46 8.31 -92.70 -0.77 15.69 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.66 6.65 -2.39 -0.02 1.65 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.86 4.42 -2.38 -0.01 1.85 16 44 H 0.19 3.52 6.60 -2.91 -0.02 3.50 16 45 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 46 H 0.11 4.53 6.29 -2.39 -0.02 4.51 16 47 H 0.10 2.42 7.73 -2.39 -0.02 2.40 16 48 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 51 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 52 H 0.09 2.91 8.06 -2.39 -0.02 2.89 16 Total: -1.00 -82.99 390.82 3.46 -79.52 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.35 Total: 35.64 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.03 Total: -0.44 kcal Atomic # 7 Polarization: -139.40 SS G_CDS: -4.78 Total: -144.19 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.03 Total: -23.27 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.90 Total: 52.73 kcal Total: -82.99 3.46 -79.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.828 kcal (2) G-P(sol) polarization free energy of solvation -82.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds