Wall clock time and date at job start Wed Apr 1 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47527 * 2 1 4 4 N 1.46506 * 109.47065 * 239.99893 * 2 1 3 5 5 C 1.36935 * 119.99861 * 76.38985 * 4 2 1 6 6 H 1.08000 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00058 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99776 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47456 * 60.00333 * 9 7 5 11 11 H 1.48498 * 109.46938 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47168 * 299.99899 * 9 7 5 13 13 C 1.53000 * 109.46995 * 120.00113 * 2 1 3 14 14 H 1.09001 * 109.58760 * 70.01985 * 13 2 1 15 15 C 1.53186 * 109.58860 * 309.59339 * 13 2 1 16 16 C 1.53043 * 109.31522 * 185.57794 * 15 13 2 17 17 C 1.53043 * 109.53658 * 61.36822 * 16 15 13 18 18 C 1.53193 * 109.30858 * 298.63436 * 17 16 15 19 19 N 1.46922 * 108.77698 * 54.63620 * 18 17 16 20 20 C 1.34780 * 120.63195 * 126.41197 * 19 18 17 21 21 O 1.21622 * 120.00249 * 181.80631 * 20 19 18 22 22 C 1.47167 * 119.99824 * 1.80442 * 20 19 18 23 23 C 1.38407 * 126.88254 * 26.07488 * 22 20 19 24 24 C 1.39670 * 105.35833 * 179.91558 * 23 22 20 25 25 N 1.30869 * 107.86291 * 0.35793 * 24 23 22 26 26 N 1.28445 * 110.92391 * 359.76999 * 25 24 23 27 27 C 1.46493 * 125.18930 * 180.02562 * 26 25 24 28 28 C 1.53781 * 113.61375 * 42.48933 * 27 26 25 29 29 C 1.53965 * 87.02139 * 220.04805 * 28 27 26 30 30 C 1.53780 * 113.61494 * 304.88133 * 27 26 25 31 31 H 1.08993 * 109.46913 * 66.24007 * 1 2 3 32 32 H 1.09006 * 109.46735 * 306.23504 * 1 2 3 33 33 H 1.08998 * 109.47056 * 186.23924 * 1 2 3 34 34 H 0.96996 * 119.99581 * 256.39517 * 4 2 1 35 35 H 0.96999 * 119.99878 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.50023 * 305.52867 * 15 13 2 37 37 H 1.09005 * 109.50096 * 65.62965 * 15 13 2 38 38 H 1.08995 * 109.45984 * 301.34304 * 16 15 13 39 39 H 1.09000 * 109.44743 * 181.37652 * 16 15 13 40 40 H 1.08993 * 109.49373 * 178.68590 * 17 16 15 41 41 H 1.09001 * 109.52519 * 58.60031 * 17 16 15 42 42 H 1.09001 * 109.58354 * 294.84635 * 18 17 16 43 43 H 1.09006 * 109.58196 * 174.42533 * 18 17 16 44 44 H 1.08001 * 127.31879 * 0.02562 * 23 22 20 45 45 H 1.08006 * 126.07194 * 180.14870 * 24 23 22 46 46 H 1.09005 * 112.85405 * 173.68425 * 27 26 25 47 47 H 1.09002 * 113.61774 * 334.56431 * 28 27 26 48 48 H 1.08995 * 113.61673 * 105.47278 * 28 27 26 49 49 H 1.08998 * 113.53589 * 270.81580 * 29 28 27 50 50 H 1.08995 * 113.74363 * 139.93922 * 29 28 27 51 51 H 1.09002 * 113.61487 * 254.53041 * 30 27 26 52 52 H 1.09003 * 113.61595 * 25.42815 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.9835 -0.0618 -2.4121 6 1 1.5964 0.9435 -2.4891 7 6 2.4467 -0.7159 -3.5454 8 7 2.9189 -1.9408 -3.4514 9 14 2.3997 0.1423 -5.2039 10 1 3.2184 1.3798 -5.1443 11 1 2.9464 -0.7637 -6.2457 12 1 0.9965 0.4928 -5.5403 13 6 2.0400 -0.7213 1.2492 14 1 1.8310 -1.7878 1.1663 15 6 1.3440 -0.1536 2.4901 16 6 1.9569 -0.7793 3.7451 17 6 3.4436 -0.4240 3.8203 18 6 4.1635 -0.9948 2.5944 19 7 3.4882 -0.5121 1.3821 20 6 4.1841 0.1105 0.4101 21 8 3.6083 0.5347 -0.5737 22 6 5.6406 0.2770 0.5392 23 6 6.5067 -0.5208 1.2665 24 6 7.7725 0.0379 1.0760 25 7 7.6370 1.0845 0.3021 26 7 6.4077 1.2535 -0.0298 27 6 5.9052 2.3291 -0.8880 28 6 6.7905 2.6023 -2.1155 29 6 6.5280 4.0996 -1.8713 30 6 6.2834 3.7366 -0.3971 31 1 -0.3633 0.4140 -0.9405 32 1 -0.3633 0.6075 0.8290 33 1 -0.3633 -1.0216 0.1117 34 1 2.3663 -1.5934 -1.1268 35 1 3.2422 -2.3981 -4.2434 36 1 1.4784 0.9277 2.5200 37 1 0.2801 -0.3875 2.4496 38 1 1.8441 -1.8626 3.7029 39 1 1.4467 -0.3952 4.6284 40 1 3.8742 -0.8504 4.7262 41 1 3.5587 0.6598 3.8378 42 1 4.1274 -2.0838 2.6237 43 1 5.2013 -0.6614 2.5920 44 1 6.2570 -1.3915 1.8547 45 1 8.6984 -0.3268 1.4958 46 1 4.8476 2.2200 -1.1282 47 1 7.8322 2.3132 -1.9756 48 1 6.3688 2.2308 -3.0493 49 1 5.6409 4.4748 -2.3815 50 1 7.4038 4.7297 -2.0263 51 1 5.4529 4.2794 0.0543 52 1 7.1861 3.7581 0.2135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707431861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:32 Heat of formation + Delta-G solvation = 132.758058 kcal Electronic energy + Delta-G solvation = -33537.531549 eV Core-core repulsion = 29542.160253 eV Total energy + Delta-G solvation = -3995.371297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.33101 -39.95375 -38.32788 -36.85306 -35.28108 -32.88789 -32.22899 -31.45971 -30.37230 -29.76680 -27.78883 -25.68253 -25.66436 -24.99699 -24.26957 -22.86648 -22.27511 -21.64640 -20.43834 -20.00868 -19.45453 -18.65207 -17.20205 -16.58945 -15.99806 -15.59197 -15.46235 -15.43859 -14.83633 -14.60488 -14.38619 -14.23895 -13.78183 -13.57727 -13.32629 -13.14116 -13.01714 -12.75704 -12.51562 -12.49409 -12.37056 -12.16610 -12.08510 -11.98536 -11.34966 -11.18693 -11.14195 -10.90352 -10.82971 -10.69479 -10.65546 -10.58859 -10.55001 -10.38501 -10.17852 -10.11565 -9.73590 -9.44383 -8.87912 -8.69939 -8.58504 -8.34207 -8.01351 -6.50471 -5.50845 -2.71577 1.77729 2.67505 2.88742 3.48406 3.54247 3.58616 3.59745 3.77882 4.43118 4.58134 4.72014 4.77460 4.81984 4.88578 4.92463 4.96703 5.04351 5.10950 5.22509 5.44046 5.46682 5.50830 5.61920 5.65407 5.71353 5.74827 5.77887 5.82774 5.83861 5.84992 5.91176 5.92044 5.97398 6.01871 6.04253 6.08379 6.12193 6.13369 6.15305 6.35287 6.41664 6.44655 6.48213 6.77423 6.79136 6.93294 7.03163 7.10910 7.35736 7.90650 7.91952 8.39974 8.65686 8.90054 9.77509 10.34598 10.70036 11.73303 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007083 B = 0.006705 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.991371 B = 4174.685352 C = 6816.588232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.062 0.938 4 N -0.691 5.691 5 C -0.183 4.183 6 H 0.062 0.938 7 C -0.025 4.025 8 N -0.942 5.942 9 Si 0.895 3.105 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.291 1.291 13 C 0.150 3.850 14 H 0.067 0.933 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.080 3.920 19 N -0.598 5.598 20 C 0.544 3.456 21 O -0.430 6.430 22 C -0.003 4.003 23 C -0.223 4.223 24 C -0.009 4.009 25 N -0.290 5.290 26 N -0.245 5.245 27 C 0.117 3.883 28 C -0.139 4.139 29 C -0.136 4.136 30 C -0.142 4.142 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.152 0.848 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 6.098 16.105 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.079 0.921 4 N -0.331 5.331 5 C -0.315 4.315 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.594 5.594 9 Si 0.728 3.272 10 H -0.219 1.219 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.046 3.954 14 H 0.085 0.915 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.171 4.171 18 C -0.043 4.043 19 N -0.335 5.335 20 C 0.328 3.672 21 O -0.297 6.297 22 C -0.133 4.133 23 C -0.251 4.251 24 C -0.185 4.185 25 N -0.121 5.121 26 N -0.032 5.032 27 C 0.016 3.984 28 C -0.177 4.177 29 C -0.174 4.174 30 C -0.180 4.180 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.181 0.819 45 H 0.196 0.804 46 H 0.169 0.831 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.341 7.452 14.738 17.357 hybrid contribution -0.191 -0.877 -0.489 1.022 sum 5.150 6.576 14.249 16.517 Atomic orbital electron populations 1.22571 0.99742 1.00180 1.00438 1.20458 0.90468 0.96903 0.85128 0.92069 1.42293 1.73099 1.15394 1.02331 1.18928 1.31140 0.96908 0.84571 0.91995 1.24545 1.03352 0.96741 0.97205 1.69625 1.49880 1.12040 1.27820 0.86414 0.77252 0.78306 0.85182 1.21883 1.22185 1.21848 1.21554 0.78243 0.99764 0.95791 0.91475 1.22001 0.99911 1.00695 0.94002 1.21532 0.95514 1.00817 0.97842 1.21905 0.96037 1.01374 0.97759 1.22441 0.98958 0.98762 0.84114 1.47442 1.07865 1.59719 1.18515 1.17060 0.83844 0.82643 0.83667 1.91279 1.67416 1.43980 1.27074 1.21861 0.94827 0.94855 1.01766 1.22373 0.92604 1.03789 1.06314 1.23455 0.98693 0.95109 1.01241 1.72999 1.01270 1.21096 1.16778 1.45687 1.02996 1.20527 1.33944 1.23706 1.01560 0.83028 0.90067 1.23318 1.00753 0.95985 0.97675 1.22710 1.02521 0.96331 0.95837 1.23363 1.02490 0.94435 0.97706 0.92449 0.94509 0.93875 0.78959 0.94174 0.91710 0.90574 0.91925 0.92189 0.91288 0.91848 0.91901 0.87266 0.81905 0.80379 0.83110 0.88707 0.90040 0.89422 0.90512 0.90663 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.56 37.16 0.32 -2.72 16 2 C 0.18 3.59 1.80 -67.93 -0.12 3.46 16 3 H 0.06 1.33 6.36 -51.93 -0.33 1.00 16 4 N -0.69 -17.27 3.24 -53.42 -0.17 -17.45 16 5 C -0.18 -5.15 8.06 -15.06 -0.12 -5.27 16 6 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 8 N -0.94 -29.48 13.06 55.49 0.72 -28.76 16 9 Si 0.90 23.47 29.55 -169.99 -5.02 18.45 16 10 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 11 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C 0.15 2.43 2.59 -67.60 -0.18 2.25 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.13 -1.60 4.53 -26.61 -0.12 -1.72 16 16 C -0.12 -1.22 5.88 -26.69 -0.16 -1.38 16 17 C -0.13 -1.33 6.08 -26.61 -0.16 -1.50 16 18 C 0.08 0.97 5.40 -3.71 -0.02 0.95 16 19 N -0.60 -9.58 2.97 -166.58 -0.50 -10.07 16 20 C 0.54 10.44 7.30 -12.63 -0.09 10.35 16 21 O -0.43 -9.80 7.68 5.26 0.04 -9.76 16 22 C 0.00 -0.06 6.55 -82.06 -0.54 -0.60 16 23 C -0.22 -3.26 8.67 -38.98 -0.34 -3.59 16 24 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 25 N -0.29 -4.70 11.14 30.59 0.34 -4.36 16 26 N -0.25 -4.23 3.46 -49.91 -0.17 -4.40 16 27 C 0.12 1.91 4.45 -67.12 -0.30 1.61 16 28 C -0.14 -2.08 7.76 -25.82 -0.20 -2.28 16 29 C -0.14 -1.63 8.09 -25.82 -0.21 -1.84 16 30 C -0.14 -1.82 7.81 -25.92 -0.20 -2.02 16 31 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 32 H 0.04 0.55 6.85 -51.93 -0.36 0.19 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.38 10.35 7.72 -40.82 -0.32 10.03 16 35 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.90 6.83 -51.93 -0.35 0.55 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.27 3.52 -51.93 -0.18 1.09 16 44 H 0.16 1.95 5.99 -52.49 -0.31 1.63 16 45 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.15 2.84 6.00 -51.93 -0.31 2.53 16 47 H 0.09 1.42 7.74 -51.93 -0.40 1.01 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -33.16 392.39 -10.03 -43.18 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -8.44 Total: 12.70 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.74 Total: -5.45 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.22 Total: -65.04 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.04 Total: -9.76 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.16 -10.03 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.942 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds