Wall clock time and date at job start Wed Apr 1 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47527 * 2 1 4 4 N 1.46506 * 109.47065 * 239.99893 * 2 1 3 5 5 C 1.36935 * 119.99861 * 76.38985 * 4 2 1 6 6 H 1.08000 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00058 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99776 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47456 * 60.00333 * 9 7 5 11 11 H 1.48498 * 109.46938 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47168 * 299.99899 * 9 7 5 13 13 C 1.53000 * 109.46995 * 120.00113 * 2 1 3 14 14 H 1.09001 * 109.58760 * 70.01985 * 13 2 1 15 15 C 1.53186 * 109.58860 * 309.59339 * 13 2 1 16 16 C 1.53043 * 109.31522 * 185.57794 * 15 13 2 17 17 C 1.53043 * 109.53658 * 61.36822 * 16 15 13 18 18 C 1.53193 * 109.30858 * 298.63436 * 17 16 15 19 19 N 1.46922 * 108.77698 * 54.63620 * 18 17 16 20 20 C 1.34780 * 120.63195 * 126.41197 * 19 18 17 21 21 O 1.21622 * 120.00249 * 181.80631 * 20 19 18 22 22 C 1.47167 * 119.99824 * 1.80442 * 20 19 18 23 23 C 1.38407 * 126.88254 * 26.07488 * 22 20 19 24 24 C 1.39670 * 105.35833 * 179.91558 * 23 22 20 25 25 N 1.30869 * 107.86291 * 0.35793 * 24 23 22 26 26 N 1.28445 * 110.92391 * 359.76999 * 25 24 23 27 27 C 1.46493 * 125.18930 * 180.02562 * 26 25 24 28 28 C 1.53781 * 113.61375 * 42.48933 * 27 26 25 29 29 C 1.53965 * 87.02139 * 220.04805 * 28 27 26 30 30 C 1.53780 * 113.61494 * 304.88133 * 27 26 25 31 31 H 1.08993 * 109.46913 * 66.24007 * 1 2 3 32 32 H 1.09006 * 109.46735 * 306.23504 * 1 2 3 33 33 H 1.08998 * 109.47056 * 186.23924 * 1 2 3 34 34 H 0.96996 * 119.99581 * 256.39517 * 4 2 1 35 35 H 0.96999 * 119.99878 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.50023 * 305.52867 * 15 13 2 37 37 H 1.09005 * 109.50096 * 65.62965 * 15 13 2 38 38 H 1.08995 * 109.45984 * 301.34304 * 16 15 13 39 39 H 1.09000 * 109.44743 * 181.37652 * 16 15 13 40 40 H 1.08993 * 109.49373 * 178.68590 * 17 16 15 41 41 H 1.09001 * 109.52519 * 58.60031 * 17 16 15 42 42 H 1.09001 * 109.58354 * 294.84635 * 18 17 16 43 43 H 1.09006 * 109.58196 * 174.42533 * 18 17 16 44 44 H 1.08001 * 127.31879 * 0.02562 * 23 22 20 45 45 H 1.08006 * 126.07194 * 180.14870 * 24 23 22 46 46 H 1.09005 * 112.85405 * 173.68425 * 27 26 25 47 47 H 1.09002 * 113.61774 * 334.56431 * 28 27 26 48 48 H 1.08995 * 113.61673 * 105.47278 * 28 27 26 49 49 H 1.08998 * 113.53589 * 270.81580 * 29 28 27 50 50 H 1.08995 * 113.74363 * 139.93922 * 29 28 27 51 51 H 1.09002 * 113.61487 * 254.53041 * 30 27 26 52 52 H 1.09003 * 113.61595 * 25.42815 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.9835 -0.0618 -2.4121 6 1 1.5964 0.9435 -2.4891 7 6 2.4467 -0.7159 -3.5454 8 7 2.9189 -1.9408 -3.4514 9 14 2.3997 0.1423 -5.2039 10 1 3.2184 1.3798 -5.1443 11 1 2.9464 -0.7637 -6.2457 12 1 0.9965 0.4928 -5.5403 13 6 2.0400 -0.7213 1.2492 14 1 1.8310 -1.7878 1.1663 15 6 1.3440 -0.1536 2.4901 16 6 1.9569 -0.7793 3.7451 17 6 3.4436 -0.4240 3.8203 18 6 4.1635 -0.9948 2.5944 19 7 3.4882 -0.5121 1.3821 20 6 4.1841 0.1105 0.4101 21 8 3.6083 0.5347 -0.5737 22 6 5.6406 0.2770 0.5392 23 6 6.5067 -0.5208 1.2665 24 6 7.7725 0.0379 1.0760 25 7 7.6370 1.0845 0.3021 26 7 6.4077 1.2535 -0.0298 27 6 5.9052 2.3291 -0.8880 28 6 6.7905 2.6023 -2.1155 29 6 6.5280 4.0996 -1.8713 30 6 6.2834 3.7366 -0.3971 31 1 -0.3633 0.4140 -0.9405 32 1 -0.3633 0.6075 0.8290 33 1 -0.3633 -1.0216 0.1117 34 1 2.3663 -1.5934 -1.1268 35 1 3.2422 -2.3981 -4.2434 36 1 1.4784 0.9277 2.5200 37 1 0.2801 -0.3875 2.4496 38 1 1.8441 -1.8626 3.7029 39 1 1.4467 -0.3952 4.6284 40 1 3.8742 -0.8504 4.7262 41 1 3.5587 0.6598 3.8378 42 1 4.1274 -2.0838 2.6237 43 1 5.2013 -0.6614 2.5920 44 1 6.2570 -1.3915 1.8547 45 1 8.6984 -0.3268 1.4958 46 1 4.8476 2.2200 -1.1282 47 1 7.8322 2.3132 -1.9756 48 1 6.3688 2.2308 -3.0493 49 1 5.6409 4.4748 -2.3815 50 1 7.4038 4.7297 -2.0263 51 1 5.4529 4.2794 0.0543 52 1 7.1861 3.7581 0.2135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707431861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:29 Heat of formation + Delta-G solvation = 112.734544 kcal Electronic energy + Delta-G solvation = -33538.399834 eV Core-core repulsion = 29542.160253 eV Total energy + Delta-G solvation = -3996.239581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -43.55056 -41.28111 -39.47120 -38.13363 -36.94267 -34.37975 -33.77246 -32.65576 -31.77763 -31.25306 -29.35929 -26.92422 -26.80512 -26.29600 -25.87498 -24.31890 -23.49438 -22.89773 -21.65651 -21.26784 -20.76686 -19.87152 -18.99305 -18.07911 -17.28119 -16.85881 -16.79539 -16.64633 -16.60543 -15.76240 -15.60537 -15.57509 -15.37279 -14.98981 -14.68543 -14.37366 -14.23477 -14.08843 -13.84700 -13.71499 -13.63625 -13.57279 -13.40835 -13.28140 -12.98739 -12.78313 -12.56327 -12.42018 -12.26113 -12.15986 -11.98730 -11.77966 -11.70707 -11.67735 -11.58695 -11.46648 -11.23028 -11.14543 -10.79804 -10.12998 -9.94498 -9.71045 -9.39926 -8.54439 -7.77356 -4.94344 0.48252 1.40172 1.42984 1.45539 1.48023 1.75041 2.23687 2.39282 2.63862 3.28944 3.44752 3.53560 3.56449 3.68743 3.75499 3.86732 3.92325 3.97790 4.06269 4.15880 4.28576 4.32994 4.39013 4.40495 4.49972 4.59415 4.61592 4.64997 4.71845 4.76482 4.81637 4.82704 4.87760 4.90128 4.90510 4.94363 4.97443 5.07974 5.09813 5.15909 5.20918 5.29468 5.29835 5.43792 5.49856 5.57423 5.62550 5.67038 5.87660 5.93020 6.43365 6.59452 7.18992 7.46682 7.53471 8.28627 8.51410 9.47737 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007083 B = 0.006705 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.991371 B = 4174.685352 C = 6816.588232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.040 0.960 4 N -0.696 5.696 5 C -0.159 4.159 6 H 0.056 0.944 7 C -0.091 4.091 8 N -0.979 5.979 9 Si 0.949 3.051 10 H -0.290 1.290 11 H -0.303 1.303 12 H -0.282 1.282 13 C 0.153 3.847 14 H 0.060 0.940 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.073 3.927 19 N -0.595 5.595 20 C 0.539 3.461 21 O -0.484 6.484 22 C -0.042 4.042 23 C -0.207 4.207 24 C -0.004 4.004 25 N -0.303 5.303 26 N -0.256 5.256 27 C 0.101 3.899 28 C -0.143 4.143 29 C -0.119 4.119 30 C -0.124 4.124 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.362 0.638 35 H 0.238 0.762 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.191 0.809 45 H 0.220 0.780 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.084 0.916 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 6.635 19.409 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.070 3.930 3 H 0.058 0.942 4 N -0.333 5.333 5 C -0.292 4.292 6 H 0.074 0.926 7 C -0.281 4.281 8 N -0.634 5.634 9 Si 0.782 3.218 10 H -0.217 1.217 11 H -0.229 1.229 12 H -0.209 1.209 13 C 0.049 3.951 14 H 0.078 0.922 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.048 4.048 19 N -0.331 5.331 20 C 0.324 3.676 21 O -0.356 6.356 22 C -0.171 4.171 23 C -0.235 4.235 24 C -0.180 4.180 25 N -0.135 5.135 26 N -0.042 5.042 27 C 0.000 4.000 28 C -0.181 4.181 29 C -0.157 4.157 30 C -0.162 4.162 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.193 0.807 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.132 0.868 44 H 0.208 0.792 45 H 0.236 0.764 46 H 0.134 0.866 47 H 0.114 0.886 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.122 0.878 51 H 0.102 0.898 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.962 8.020 18.123 20.696 hybrid contribution -0.356 -1.040 -1.355 1.745 sum 5.606 6.980 16.767 19.008 Atomic orbital electron populations 1.22414 0.97949 1.00948 1.00514 1.20560 0.91439 0.95826 0.85133 0.94182 1.42360 1.73208 1.14693 1.03081 1.19113 1.28140 0.96124 0.85851 0.92638 1.25142 1.05085 0.97661 1.00210 1.69783 1.52460 1.13471 1.27716 0.85514 0.77458 0.77147 0.81700 1.21725 1.22945 1.20867 1.21477 0.78917 0.98916 0.95768 0.92184 1.21952 1.00316 1.00315 0.93220 1.21532 0.95526 1.01111 0.97090 1.21881 0.95874 1.00955 0.97655 1.22729 0.99291 0.99563 0.83231 1.47592 1.07841 1.58585 1.19038 1.17473 0.84758 0.81838 0.83514 1.91239 1.68549 1.46722 1.29114 1.21970 0.94558 0.96607 1.03974 1.22757 0.92197 1.03576 1.05018 1.24177 0.99932 0.93943 0.99983 1.72987 1.00780 1.22258 1.17436 1.45779 1.03310 1.20819 1.34313 1.23697 1.00028 0.84921 0.91397 1.23328 1.00223 0.98502 0.96026 1.22683 1.03711 0.94378 0.94893 1.23272 1.02812 0.91830 0.98319 0.95115 0.90842 0.93458 0.80717 0.95301 0.92210 0.89374 0.91238 0.89831 0.88164 0.92608 0.90616 0.86761 0.79204 0.76362 0.86562 0.88618 0.92561 0.89160 0.87826 0.89784 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 8.56 71.98 0.62 -5.05 16 2 C 0.18 7.29 1.80 44.99 0.08 7.37 16 3 H 0.04 1.83 6.36 -2.39 -0.02 1.82 16 4 N -0.70 -36.34 3.24 -322.93 -1.05 -37.39 16 5 C -0.16 -9.34 8.06 84.03 0.68 -8.67 16 6 H 0.06 3.27 7.83 -2.91 -0.02 3.24 16 7 C -0.09 -5.63 5.50 84.86 0.47 -5.16 16 8 N -0.98 -64.10 13.06 21.65 0.28 -63.82 16 9 Si 0.95 50.39 29.55 68.60 2.03 52.41 16 10 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 11 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 12 H -0.28 -14.33 7.11 99.48 0.71 -13.63 16 13 C 0.15 4.88 2.59 44.97 0.12 4.99 16 14 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.12 -2.72 4.53 30.67 0.14 -2.58 16 16 C -0.12 -1.92 5.88 30.62 0.18 -1.74 16 17 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 18 C 0.07 1.59 5.40 86.36 0.47 2.05 16 19 N -0.59 -18.85 2.97 -799.17 -2.38 -21.22 16 20 C 0.54 21.40 7.30 86.59 0.63 22.03 16 21 O -0.48 -23.46 7.68 -4.10 -0.03 -23.49 16 22 C -0.04 -1.50 6.55 40.79 0.27 -1.23 16 23 C -0.21 -5.71 8.67 22.66 0.20 -5.52 16 24 C 0.00 -0.11 12.03 85.18 1.02 0.91 16 25 N -0.30 -9.56 11.14 -57.13 -0.64 -10.20 16 26 N -0.26 -8.97 3.46 -311.81 -1.08 -10.05 16 27 C 0.10 3.44 4.45 45.52 0.20 3.64 16 28 C -0.14 -4.44 7.76 31.18 0.24 -4.19 16 29 C -0.12 -2.78 8.09 31.19 0.25 -2.52 16 30 C -0.12 -3.14 7.81 31.12 0.24 -2.90 16 31 H 0.03 1.24 7.94 -2.39 -0.02 1.22 16 32 H 0.07 2.07 6.85 -2.38 -0.02 2.05 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.36 20.81 7.72 -92.71 -0.72 20.09 16 35 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 1.81 6.83 -2.38 -0.02 1.79 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 2.37 3.52 -2.38 -0.01 2.36 16 44 H 0.19 3.99 5.99 -2.91 -0.02 3.98 16 45 H 0.22 3.61 8.06 -2.91 -0.02 3.59 16 46 H 0.12 4.80 6.00 -2.38 -0.01 4.79 16 47 H 0.10 2.91 7.74 -2.39 -0.02 2.90 16 48 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.10 2.36 8.04 -2.39 -0.02 2.35 16 Total: -1.00 -77.69 392.39 3.34 -74.35 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: 0.21 Total: 39.86 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.99 Total: -0.45 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -4.85 Total: -142.68 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.03 Total: -23.49 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.03 Total: 52.41 kcal Total: -77.69 3.34 -74.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.080 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds