Wall clock time and date at job start Wed Apr 1 2020 05:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 N 1.46500 * 109.47452 * 119.99930 * 2 1 3 5 5 C 1.36936 * 120.00137 * 275.00373 * 4 2 1 6 6 H 1.08001 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00242 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99895 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47202 * 90.00374 * 9 7 5 11 11 H 1.48503 * 109.47100 * 209.99904 * 9 7 5 12 12 H 1.48499 * 109.47402 * 330.00083 * 9 7 5 13 13 C 1.52997 * 109.46999 * 240.00290 * 2 1 3 14 14 H 1.09003 * 109.69921 * 58.72111 * 13 2 1 15 15 C 1.53184 * 109.59041 * 298.36225 * 13 2 1 16 16 C 1.53038 * 109.34459 * 185.59403 * 15 13 2 17 17 C 1.53042 * 109.53528 * 61.31187 * 16 15 13 18 18 C 1.53190 * 109.34302 * 298.68748 * 17 16 15 19 19 N 1.46918 * 108.77427 * 54.61588 * 18 17 16 20 20 C 1.34787 * 120.62695 * 126.37276 * 19 18 17 21 21 O 1.21566 * 120.00005 * 173.59313 * 20 19 18 22 22 C 1.47712 * 119.99911 * 353.58616 * 20 19 18 23 23 C 1.41633 * 126.49774 * 173.14926 * 22 20 19 24 24 C 1.34705 * 105.33745 * 179.83200 * 23 22 20 25 25 N 1.35501 * 107.70771 * 0.44486 * 24 23 22 26 26 N 1.28415 * 109.72541 * 359.68590 * 25 24 23 27 27 C 1.47002 * 123.89921 * 179.67919 * 25 24 23 28 28 C 1.53174 * 108.87113 * 342.26996 * 27 25 24 29 29 C 1.53161 * 109.57660 * 51.17588 * 28 27 25 30 30 C 1.50792 * 127.53740 * 180.15954 * 24 23 22 31 31 H 1.09008 * 109.46746 * 305.13465 * 1 2 3 32 32 H 1.08991 * 109.47524 * 65.13918 * 1 2 3 33 33 H 1.08996 * 109.46883 * 185.14494 * 1 2 3 34 34 H 0.97002 * 119.99273 * 95.00380 * 4 2 1 35 35 H 0.97004 * 120.00052 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.49261 * 305.53153 * 15 13 2 37 37 H 1.09004 * 109.49701 * 65.58766 * 15 13 2 38 38 H 1.09002 * 109.43163 * 301.31269 * 16 15 13 39 39 H 1.08999 * 109.48797 * 181.35306 * 16 15 13 40 40 H 1.09008 * 109.49406 * 178.71857 * 17 16 15 41 41 H 1.09005 * 109.49871 * 58.65958 * 17 16 15 42 42 H 1.08995 * 109.58705 * 174.40975 * 18 17 16 43 43 H 1.08999 * 109.58209 * 294.83023 * 18 17 16 44 44 H 1.08004 * 127.32788 * 359.95322 * 23 22 20 45 45 H 1.08994 * 109.56867 * 102.19308 * 27 25 24 46 46 H 1.09000 * 109.57093 * 222.54640 * 27 25 24 47 47 H 1.08999 * 109.49804 * 291.12155 * 28 27 25 48 48 H 1.09002 * 109.43568 * 171.18307 * 28 27 25 49 49 H 1.09001 * 109.54379 * 170.50024 * 29 28 27 50 50 H 1.09004 * 109.54066 * 50.24083 * 29 28 27 51 51 H 1.09004 * 109.71879 * 284.46740 * 30 24 23 52 52 H 1.08999 * 109.72192 * 45.06782 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.7376 -0.0054 4.6429 9 14 3.0545 -2.4748 3.4255 10 1 4.4871 -2.6180 3.0618 11 1 2.8145 -3.1046 4.7488 12 1 2.2141 -3.1430 2.3996 13 6 2.0400 -0.7212 -1.2493 14 1 1.6601 -0.2236 -2.1416 15 6 1.5648 -2.1774 -1.2316 16 6 2.1914 -2.9293 -2.4080 17 6 3.7156 -2.9161 -2.2704 18 6 4.2152 -1.4683 -2.2998 19 7 3.5090 -0.7032 -1.2632 20 6 4.1960 0.0013 -0.3421 21 8 3.6039 0.7223 0.4374 22 6 5.6681 -0.1027 -0.2796 23 6 6.5335 0.6697 0.5331 24 6 7.7741 0.2234 0.2572 25 7 7.6628 -0.7536 -0.6752 26 7 6.4262 -0.9285 -0.9742 27 6 8.8076 -1.4835 -1.2386 28 6 10.0874 -0.6892 -0.9599 29 6 10.1587 -0.3368 0.5289 30 6 9.0755 0.7015 0.8500 31 1 -0.3633 0.5915 0.8405 32 1 -0.3634 0.4320 -0.9323 33 1 -0.3633 -1.0235 0.0922 34 1 2.2492 -1.6317 1.1525 35 1 3.0603 -0.4629 5.4351 36 1 1.8685 -2.6478 -0.2964 37 1 0.4785 -2.2066 -1.3175 38 1 1.9069 -2.4439 -3.3416 39 1 1.8360 -3.9598 -2.4117 40 1 4.1603 -3.4713 -3.0964 41 1 3.9996 -3.3799 -1.3257 42 1 5.2870 -1.4475 -2.1030 43 1 4.0126 -1.0318 -3.2778 44 1 6.2572 1.4491 1.2279 45 1 8.8780 -2.4670 -0.7740 46 1 8.6758 -1.5949 -2.3148 47 1 10.0825 0.2272 -1.5500 48 1 10.9544 -1.2911 -1.2322 49 1 11.1404 0.0772 0.7590 50 1 9.9913 -1.2343 1.1244 51 1 9.3470 1.6630 0.4141 52 1 8.9720 0.8038 1.9303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712999059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:53 Heat of formation + Delta-G solvation = 101.207615 kcal Electronic energy + Delta-G solvation = -33291.338859 eV Core-core repulsion = 29294.599432 eV Total energy + Delta-G solvation = -3996.739426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.60365 -39.91378 -36.99089 -36.54283 -35.14475 -33.01256 -32.43344 -32.05824 -30.26546 -29.75301 -28.63233 -28.29068 -25.52300 -24.40946 -23.79398 -22.96891 -22.49043 -21.89266 -20.61789 -19.75228 -19.47012 -18.12759 -17.22889 -16.88687 -16.46491 -15.76761 -15.43960 -14.89504 -14.51078 -14.41582 -14.36139 -14.25865 -14.05719 -13.74872 -13.68119 -13.40573 -13.30447 -12.99118 -12.76803 -12.56907 -12.26990 -12.07988 -12.05025 -11.74689 -11.44193 -11.42397 -11.38889 -11.24732 -11.20297 -11.07362 -10.71177 -10.60654 -10.52208 -10.49194 -10.06813 -9.85503 -9.56557 -9.21226 -8.84970 -8.67534 -8.59304 -8.22954 -7.87935 -6.80761 -5.42323 -2.70396 1.93915 2.47175 2.52627 3.52566 3.54984 3.56915 3.60231 4.10162 4.14646 4.31933 4.41700 4.56040 4.86954 4.87424 4.93217 5.01818 5.06904 5.12972 5.15405 5.22667 5.30390 5.38070 5.41352 5.52623 5.54394 5.62390 5.66760 5.68005 5.78901 5.81191 5.84707 5.89328 5.97622 6.02036 6.08951 6.16199 6.20501 6.24079 6.32714 6.35532 6.45593 6.51598 6.56447 6.76521 6.80584 6.97209 7.09556 7.19909 7.46901 8.05859 8.26323 8.38209 8.75978 9.09525 9.56616 10.29216 10.50326 11.78418 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.004960 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.051872 B = 5643.863498 C = 7125.123018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.172 3.828 3 H 0.093 0.907 4 N -0.734 5.734 5 C -0.177 4.177 6 H 0.089 0.911 7 C -0.009 4.009 8 N -0.947 5.947 9 Si 0.871 3.129 10 H -0.293 1.293 11 H -0.297 1.297 12 H -0.284 1.284 13 C 0.145 3.855 14 H 0.067 0.933 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.130 4.130 18 C 0.079 3.921 19 N -0.606 5.606 20 C 0.581 3.419 21 O -0.443 6.443 22 C 0.010 3.990 23 C -0.168 4.168 24 C 0.009 3.991 25 N -0.293 5.293 26 N -0.274 5.274 27 C 0.123 3.877 28 C -0.134 4.134 29 C -0.127 4.127 30 C -0.051 4.051 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.354 0.646 35 H 0.251 0.749 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.051 0.949 44 H 0.163 0.837 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.229 -3.252 -18.023 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.111 0.889 4 N -0.377 5.377 5 C -0.307 4.307 6 H 0.107 0.893 7 C -0.201 4.201 8 N -0.599 5.599 9 Si 0.703 3.297 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.210 1.210 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.169 4.169 18 C -0.045 4.045 19 N -0.342 5.342 20 C 0.365 3.635 21 O -0.310 6.310 22 C -0.150 4.150 23 C -0.196 4.196 24 C -0.115 4.115 25 N -0.082 5.082 26 N -0.108 5.108 27 C 0.003 3.997 28 C -0.173 4.173 29 C -0.165 4.165 30 C -0.089 4.089 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.187 0.813 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.069 0.931 44 H 0.181 0.819 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.964 -3.567 -18.245 23.250 hybrid contribution 0.381 -1.256 0.580 1.435 sum 14.345 -4.823 -17.664 23.261 Atomic orbital electron populations 1.22548 0.99630 1.00846 0.99875 1.20694 0.90428 0.98293 0.84277 0.88948 1.42810 1.79268 1.08395 1.07231 1.18968 1.32270 0.94941 0.84561 0.89317 1.24485 1.03366 0.96222 0.96058 1.69677 1.55432 1.34647 1.00117 0.86728 0.78146 0.88740 0.76044 1.22044 1.22350 1.21034 1.21595 0.78943 0.95683 0.99670 0.91556 1.21996 1.00371 0.95931 0.98813 1.21533 0.95552 0.99986 0.98499 1.21854 0.95909 0.97262 1.01838 1.22491 1.01331 0.90301 0.90336 1.47679 1.05839 1.50066 1.30603 1.17019 0.83391 0.82218 0.80909 1.91028 1.65914 1.36533 1.37512 1.22372 0.95048 0.97940 0.99663 1.21380 0.89904 1.04333 1.03958 1.21175 0.97448 0.95586 0.97302 1.45793 1.04878 1.27510 1.29979 1.72944 0.89772 1.23959 1.24133 1.22037 0.82102 0.95446 1.00160 1.21919 0.96102 1.01258 0.97974 1.21690 0.99447 0.99873 0.95465 1.20315 0.88555 0.98549 1.01525 0.92408 0.94565 0.93762 0.81263 0.93866 0.91366 0.90828 0.92238 0.92412 0.91750 0.91929 0.84949 0.93113 0.81940 0.89375 0.88568 0.90463 0.89077 0.90252 0.91119 0.89708 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.04 37.16 0.34 -2.83 16 2 C 0.17 3.63 1.89 -67.93 -0.13 3.50 16 3 H 0.09 2.17 5.94 -52.02 -0.31 1.86 16 4 N -0.73 -18.58 3.21 -53.43 -0.17 -18.75 16 5 C -0.18 -5.30 8.54 -15.06 -0.13 -5.43 16 6 H 0.09 2.90 8.06 -52.49 -0.42 2.48 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 8 N -0.95 -31.67 13.97 55.49 0.78 -30.90 16 9 Si 0.87 24.32 27.73 -169.99 -4.71 19.60 16 10 H -0.29 -8.33 7.11 56.52 0.40 -7.93 16 11 H -0.30 -8.34 7.11 56.52 0.40 -7.94 16 12 H -0.28 -7.53 6.52 56.52 0.37 -7.16 16 13 C 0.14 2.53 2.75 -67.61 -0.19 2.34 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.13 -2.13 4.79 -26.62 -0.13 -2.25 16 16 C -0.12 -1.54 5.89 -26.69 -0.16 -1.70 16 17 C -0.13 -1.75 6.08 -26.61 -0.16 -1.92 16 18 C 0.08 1.17 6.32 -3.72 -0.02 1.15 16 19 N -0.61 -10.94 2.96 -166.39 -0.49 -11.43 16 20 C 0.58 12.29 7.08 -12.38 -0.09 12.20 16 21 O -0.44 -10.95 10.05 5.31 0.05 -10.90 16 22 C 0.01 0.20 6.87 -82.68 -0.57 -0.37 16 23 C -0.17 -3.04 10.76 -39.54 -0.43 -3.46 16 24 C 0.01 0.12 6.57 -82.18 -0.54 -0.42 16 25 N -0.29 -3.99 3.74 -56.70 -0.21 -4.20 16 26 N -0.27 -4.50 8.43 33.46 0.28 -4.21 16 27 C 0.12 1.04 7.17 -3.68 -0.03 1.01 16 28 C -0.13 -0.81 5.92 -26.56 -0.16 -0.97 16 29 C -0.13 -0.91 5.98 -26.42 -0.16 -1.07 16 30 C -0.05 -0.50 6.28 -27.61 -0.17 -0.67 16 31 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.81 6.89 -51.93 -0.36 0.45 16 34 H 0.35 9.10 3.76 -40.82 -0.15 8.95 16 35 H 0.25 8.09 8.31 -40.82 -0.34 7.75 16 36 H 0.07 1.31 6.27 -51.93 -0.33 0.98 16 37 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.13 2.02 3.76 -107.87 -0.41 1.61 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.16 3.01 8.06 -52.48 -0.42 2.59 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -37.21 386.45 -10.15 -47.36 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.69 Total: 8.86 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.81 Total: -1.25 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 0.18 Total: -69.50 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.05 Total: -10.90 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.71 Total: 19.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.21 -10.15 -47.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712999059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.565 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds