Wall clock time and date at job start Wed Apr 1 2020 05:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 N 1.46500 * 109.47452 * 119.99930 * 2 1 3 5 5 C 1.36936 * 120.00137 * 275.00373 * 4 2 1 6 6 H 1.08001 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00242 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99895 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47202 * 90.00374 * 9 7 5 11 11 H 1.48503 * 109.47100 * 209.99904 * 9 7 5 12 12 H 1.48499 * 109.47402 * 330.00083 * 9 7 5 13 13 C 1.52997 * 109.46999 * 240.00290 * 2 1 3 14 14 H 1.09003 * 109.69921 * 58.72111 * 13 2 1 15 15 C 1.53184 * 109.59041 * 298.36225 * 13 2 1 16 16 C 1.53038 * 109.34459 * 185.59403 * 15 13 2 17 17 C 1.53042 * 109.53528 * 61.31187 * 16 15 13 18 18 C 1.53190 * 109.34302 * 298.68748 * 17 16 15 19 19 N 1.46918 * 108.77427 * 54.61588 * 18 17 16 20 20 C 1.34787 * 120.62695 * 126.37276 * 19 18 17 21 21 O 1.21566 * 120.00005 * 173.59313 * 20 19 18 22 22 C 1.47712 * 119.99911 * 353.58616 * 20 19 18 23 23 C 1.41633 * 126.49774 * 173.14926 * 22 20 19 24 24 C 1.34705 * 105.33745 * 179.83200 * 23 22 20 25 25 N 1.35501 * 107.70771 * 0.44486 * 24 23 22 26 26 N 1.28415 * 109.72541 * 359.68590 * 25 24 23 27 27 C 1.47002 * 123.89921 * 179.67919 * 25 24 23 28 28 C 1.53174 * 108.87113 * 342.26996 * 27 25 24 29 29 C 1.53161 * 109.57660 * 51.17588 * 28 27 25 30 30 C 1.50792 * 127.53740 * 180.15954 * 24 23 22 31 31 H 1.09008 * 109.46746 * 305.13465 * 1 2 3 32 32 H 1.08991 * 109.47524 * 65.13918 * 1 2 3 33 33 H 1.08996 * 109.46883 * 185.14494 * 1 2 3 34 34 H 0.97002 * 119.99273 * 95.00380 * 4 2 1 35 35 H 0.97004 * 120.00052 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.49261 * 305.53153 * 15 13 2 37 37 H 1.09004 * 109.49701 * 65.58766 * 15 13 2 38 38 H 1.09002 * 109.43163 * 301.31269 * 16 15 13 39 39 H 1.08999 * 109.48797 * 181.35306 * 16 15 13 40 40 H 1.09008 * 109.49406 * 178.71857 * 17 16 15 41 41 H 1.09005 * 109.49871 * 58.65958 * 17 16 15 42 42 H 1.08995 * 109.58705 * 174.40975 * 18 17 16 43 43 H 1.08999 * 109.58209 * 294.83023 * 18 17 16 44 44 H 1.08004 * 127.32788 * 359.95322 * 23 22 20 45 45 H 1.08994 * 109.56867 * 102.19308 * 27 25 24 46 46 H 1.09000 * 109.57093 * 222.54640 * 27 25 24 47 47 H 1.08999 * 109.49804 * 291.12155 * 28 27 25 48 48 H 1.09002 * 109.43568 * 171.18307 * 28 27 25 49 49 H 1.09001 * 109.54379 * 170.50024 * 29 28 27 50 50 H 1.09004 * 109.54066 * 50.24083 * 29 28 27 51 51 H 1.09004 * 109.71879 * 284.46740 * 30 24 23 52 52 H 1.08999 * 109.72192 * 45.06782 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.7376 -0.0054 4.6429 9 14 3.0545 -2.4748 3.4255 10 1 4.4871 -2.6180 3.0618 11 1 2.8145 -3.1046 4.7488 12 1 2.2141 -3.1430 2.3996 13 6 2.0400 -0.7212 -1.2493 14 1 1.6601 -0.2236 -2.1416 15 6 1.5648 -2.1774 -1.2316 16 6 2.1914 -2.9293 -2.4080 17 6 3.7156 -2.9161 -2.2704 18 6 4.2152 -1.4683 -2.2998 19 7 3.5090 -0.7032 -1.2632 20 6 4.1960 0.0013 -0.3421 21 8 3.6039 0.7223 0.4374 22 6 5.6681 -0.1027 -0.2796 23 6 6.5335 0.6697 0.5331 24 6 7.7741 0.2234 0.2572 25 7 7.6628 -0.7536 -0.6752 26 7 6.4262 -0.9285 -0.9742 27 6 8.8076 -1.4835 -1.2386 28 6 10.0874 -0.6892 -0.9599 29 6 10.1587 -0.3368 0.5289 30 6 9.0755 0.7015 0.8500 31 1 -0.3633 0.5915 0.8405 32 1 -0.3634 0.4320 -0.9323 33 1 -0.3633 -1.0235 0.0922 34 1 2.2492 -1.6317 1.1525 35 1 3.0603 -0.4629 5.4351 36 1 1.8685 -2.6478 -0.2964 37 1 0.4785 -2.2066 -1.3175 38 1 1.9069 -2.4439 -3.3416 39 1 1.8360 -3.9598 -2.4117 40 1 4.1603 -3.4713 -3.0964 41 1 3.9996 -3.3799 -1.3257 42 1 5.2870 -1.4475 -2.1030 43 1 4.0126 -1.0318 -3.2778 44 1 6.2572 1.4491 1.2279 45 1 8.8780 -2.4670 -0.7740 46 1 8.6758 -1.5949 -2.3148 47 1 10.0825 0.2272 -1.5500 48 1 10.9544 -1.2911 -1.2322 49 1 11.1404 0.0772 0.7590 50 1 9.9913 -1.2343 1.1244 51 1 9.3470 1.6630 0.4141 52 1 8.9720 0.8038 1.9303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712999059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:52 Heat of formation + Delta-G solvation = 76.282420 kcal Electronic energy + Delta-G solvation = -33292.419696 eV Core-core repulsion = 29294.599432 eV Total energy + Delta-G solvation = -3997.820264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.79509 -41.38993 -38.25781 -37.59781 -36.83763 -34.20993 -34.01251 -33.70429 -31.86797 -31.13958 -29.90060 -29.60358 -26.80041 -25.60137 -25.36667 -24.46899 -23.73422 -23.01233 -21.89209 -21.28376 -20.50989 -19.78958 -19.11795 -17.96899 -17.63903 -16.99430 -16.96793 -16.43660 -15.99588 -15.80244 -15.39086 -15.30988 -15.15700 -15.10037 -14.90823 -14.87009 -14.63066 -14.50194 -14.18933 -14.05120 -13.73851 -13.42826 -13.35766 -13.24900 -12.96911 -12.81077 -12.65780 -12.57159 -12.34303 -12.04532 -12.01828 -11.89178 -11.87413 -11.78466 -11.74317 -11.57222 -11.38445 -10.94071 -10.79876 -10.00637 -9.90910 -9.87221 -9.42178 -8.92836 -7.87415 -5.11120 0.63212 1.16546 1.22872 1.28038 1.33403 1.50677 2.19446 2.51420 2.61254 3.27499 3.45035 3.53581 3.68829 3.76052 3.78547 3.85744 3.92245 3.98143 4.04566 4.22084 4.29117 4.31385 4.37668 4.40207 4.41300 4.52325 4.61949 4.70787 4.74046 4.76509 4.82801 4.85283 4.91331 4.95399 5.00102 5.01125 5.04925 5.08555 5.10913 5.12390 5.21096 5.22695 5.29005 5.39865 5.45428 5.50965 5.59117 5.87203 5.96001 6.06788 6.35523 6.62114 6.98156 7.23607 7.55664 8.01423 8.20592 9.37533 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.004960 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.051872 B = 5643.863498 C = 7125.123018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.061 0.939 4 N -0.730 5.730 5 C -0.143 4.143 6 H 0.046 0.954 7 C -0.081 4.081 8 N -0.997 5.997 9 Si 0.938 3.062 10 H -0.302 1.302 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.146 3.854 14 H 0.098 0.902 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.126 4.126 18 C 0.074 3.926 19 N -0.603 5.603 20 C 0.572 3.428 21 O -0.503 6.503 22 C -0.029 4.029 23 C -0.216 4.216 24 C 0.026 3.974 25 N -0.282 5.282 26 N -0.265 5.265 27 C 0.106 3.894 28 C -0.126 4.126 29 C -0.124 4.124 30 C -0.054 4.054 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.354 0.646 35 H 0.247 0.753 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.108 0.892 50 H 0.062 0.938 51 H 0.104 0.896 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.146 -6.153 -22.232 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.079 0.921 4 N -0.373 5.373 5 C -0.275 4.275 6 H 0.064 0.936 7 C -0.269 4.269 8 N -0.653 5.653 9 Si 0.770 3.230 10 H -0.231 1.231 11 H -0.223 1.223 12 H -0.186 1.186 13 C 0.043 3.957 14 H 0.116 0.884 15 C -0.168 4.168 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.049 4.049 19 N -0.338 5.338 20 C 0.358 3.642 21 O -0.375 6.375 22 C -0.188 4.188 23 C -0.244 4.244 24 C -0.099 4.099 25 N -0.071 5.071 26 N -0.100 5.100 27 C -0.011 4.011 28 C -0.164 4.164 29 C -0.161 4.161 30 C -0.093 4.093 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.188 0.812 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.053 0.947 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.155 0.845 45 H 0.118 0.882 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.146 0.854 49 H 0.126 0.874 50 H 0.081 0.919 51 H 0.122 0.878 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.862 -6.518 -22.568 28.345 hybrid contribution -0.108 -0.245 1.741 1.762 sum 15.755 -6.763 -20.827 26.976 Atomic orbital electron populations 1.22370 0.97380 1.01220 1.00796 1.20789 0.91838 0.97027 0.84566 0.92091 1.42742 1.79240 1.08161 1.07112 1.18777 1.29404 0.93128 0.86228 0.93616 1.25128 1.05101 1.00762 0.95902 1.69861 1.57993 1.36504 1.00903 0.85612 0.77338 0.83667 0.76406 1.23064 1.22255 1.18601 1.21628 0.78797 0.96867 0.98429 0.88411 1.21980 1.01640 0.94441 0.98716 1.21520 0.94647 1.00766 0.97889 1.21843 0.96675 0.96106 1.01789 1.22725 1.00942 0.91046 0.90149 1.47833 1.06230 1.49330 1.30401 1.17439 0.84384 0.81662 0.80764 1.91001 1.67281 1.39145 1.40028 1.22219 0.94678 1.00037 1.01826 1.21397 0.92121 1.05529 1.05348 1.21641 0.97779 0.94359 0.96117 1.46412 1.05188 1.26659 1.28805 1.72893 0.90778 1.22897 1.23458 1.22670 0.81168 0.95878 1.01415 1.21974 0.95762 1.01740 0.96949 1.21723 0.99466 0.98592 0.96342 1.20552 0.87258 1.00479 1.01002 0.95257 0.90596 0.92824 0.81237 0.94364 0.94892 0.89090 0.89624 0.90671 0.88300 0.94678 0.85436 0.90547 0.84510 0.88220 0.86362 0.90035 0.85433 0.87402 0.91930 0.87765 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 9.04 71.98 0.65 -5.21 16 2 C 0.17 7.15 1.89 44.99 0.08 7.24 16 3 H 0.06 3.06 5.94 -3.79 -0.02 3.04 16 4 N -0.73 -38.41 3.21 -322.94 -1.04 -39.45 16 5 C -0.14 -9.14 8.54 84.03 0.72 -8.43 16 6 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 7 C -0.08 -5.34 5.50 84.86 0.47 -4.87 16 8 N -1.00 -70.66 13.97 21.65 0.30 -70.36 16 9 Si 0.94 52.60 27.73 68.60 1.90 54.51 16 10 H -0.30 -17.26 7.11 99.48 0.71 -16.56 16 11 H -0.30 -16.40 7.11 99.48 0.71 -15.70 16 12 H -0.26 -13.42 6.52 99.48 0.65 -12.77 16 13 C 0.15 4.91 2.75 44.97 0.12 5.03 16 14 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 15 C -0.13 -3.80 4.79 30.67 0.15 -3.65 16 16 C -0.11 -2.39 5.89 30.62 0.18 -2.21 16 17 C -0.13 -2.95 6.08 30.67 0.19 -2.77 16 18 C 0.07 2.01 6.32 86.36 0.55 2.55 16 19 N -0.60 -21.61 2.96 -798.59 -2.37 -23.98 16 20 C 0.57 25.51 7.08 86.75 0.61 26.13 16 21 O -0.50 -27.00 10.05 -3.92 -0.04 -27.04 16 22 C -0.03 -1.17 6.87 42.48 0.29 -0.88 16 23 C -0.22 -8.46 10.76 22.30 0.24 -8.22 16 24 C 0.03 0.76 6.57 41.21 0.27 1.03 16 25 N -0.28 -7.32 3.74 -333.29 -1.25 -8.57 16 26 N -0.26 -8.61 8.43 -48.06 -0.41 -9.01 16 27 C 0.11 1.44 7.17 86.34 0.62 2.06 16 28 C -0.13 -0.98 5.92 30.71 0.18 -0.79 16 29 C -0.12 -1.37 5.98 30.80 0.18 -1.18 16 30 C -0.05 -1.01 6.28 30.02 0.19 -0.82 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.88 6.89 -2.39 -0.02 1.86 16 34 H 0.35 18.55 3.76 -92.71 -0.35 18.20 16 35 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 36 H 0.03 1.20 6.27 -2.38 -0.01 1.19 16 37 H 0.09 2.35 6.91 -2.38 -0.02 2.33 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.13 3.67 3.76 -74.75 -0.28 3.39 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.14 5.85 8.06 -2.91 -0.02 5.83 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 0.63 8.11 -2.39 -0.02 0.61 16 48 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.82 8.12 -2.38 -0.02 0.80 16 51 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -90.80 386.45 3.04 -87.77 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.23 Total: 31.14 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.69 Total: 4.99 kcal Atomic # 7 Polarization: -146.61 SS G_CDS: -4.75 Total: -151.37 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 1.90 Total: 54.51 kcal Total: -90.80 3.04 -87.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712999059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.050 kcal (2) G-P(sol) polarization free energy of solvation -90.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds