Wall clock time and date at job start Wed Apr 1 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 N 1.46502 * 109.47697 * 120.00501 * 2 1 3 5 5 C 1.36936 * 119.99546 * 285.37885 * 4 2 1 6 6 H 1.08000 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99767 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00032 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47153 * 59.99419 * 9 7 5 11 11 H 1.48495 * 109.46937 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46687 * 299.99836 * 9 7 5 13 13 C 1.53007 * 109.46849 * 240.00528 * 2 1 3 14 14 H 1.09000 * 109.69953 * 287.66146 * 13 2 1 15 15 C 1.53625 * 109.66541 * 48.24870 * 13 2 1 16 16 C 1.53040 * 109.23986 * 174.54638 * 15 13 2 17 17 C 1.53040 * 109.54309 * 298.51652 * 16 15 13 18 18 C 1.53189 * 109.30952 * 61.36543 * 17 16 15 19 19 N 1.46922 * 108.77639 * 305.36149 * 18 17 16 20 20 C 1.34779 * 120.63631 * 233.58855 * 19 18 17 21 21 O 1.21569 * 120.00451 * 184.33457 * 20 19 18 22 22 C 1.47711 * 119.99361 * 4.33794 * 20 19 18 23 23 C 1.41648 * 126.49494 * 173.31799 * 22 20 19 24 24 C 1.34698 * 105.33629 * 180.02562 * 23 22 20 25 25 N 1.35512 * 107.71469 * 0.02562 * 24 23 22 26 26 N 1.28424 * 109.71531 * 359.96831 * 25 24 23 27 27 C 1.46991 * 123.90594 * 179.97438 * 25 24 23 28 28 C 1.53142 * 108.89104 * 342.36803 * 27 25 24 29 29 C 1.53150 * 109.59154 * 51.10163 * 28 27 25 30 30 C 1.50798 * 127.53595 * 180.02562 * 24 23 22 31 31 H 1.08998 * 109.46490 * 299.99713 * 1 2 3 32 32 H 1.08999 * 109.47149 * 59.99667 * 1 2 3 33 33 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99957 * 105.37299 * 4 2 1 35 35 H 0.96999 * 120.00150 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.62912 * 54.56406 * 15 13 2 37 37 H 1.08992 * 109.46057 * 294.43854 * 15 13 2 38 38 H 1.09001 * 109.45837 * 178.48873 * 16 15 13 39 39 H 1.09004 * 109.45586 * 58.53939 * 16 15 13 40 40 H 1.08995 * 109.49398 * 301.41076 * 17 16 15 41 41 H 1.09000 * 109.49454 * 181.31590 * 17 16 15 42 42 H 1.09007 * 109.58327 * 185.58183 * 18 17 16 43 43 H 1.08994 * 109.70965 * 65.22414 * 18 17 16 44 44 H 1.07996 * 127.33121 * 359.97438 * 23 22 20 45 45 H 1.08998 * 109.57013 * 222.54805 * 27 25 24 46 46 H 1.09002 * 109.66423 * 102.24705 * 27 25 24 47 47 H 1.09004 * 109.44394 * 171.13102 * 28 27 25 48 48 H 1.08996 * 109.44853 * 291.06890 * 28 27 25 49 49 H 1.08999 * 109.54441 * 50.26644 * 29 28 27 50 50 H 1.08994 * 109.54283 * 170.52877 * 29 28 27 51 51 H 1.09001 * 109.71448 * 284.06858 * 30 24 23 52 52 H 1.09000 * 109.71847 * 44.71374 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 1.9502 -0.0757 2.4176 6 1 1.5367 0.9187 2.4992 7 6 2.4136 -0.7298 3.5509 8 7 2.9180 -1.9414 3.4513 9 14 2.3211 0.1094 5.2172 10 1 0.9048 0.4210 5.5366 11 1 2.8757 -0.7935 6.2576 12 1 3.1090 1.3677 5.1820 13 6 2.0400 -0.7212 -1.2494 14 1 1.8689 -1.7931 -1.1504 15 6 1.3040 -0.1906 -2.4891 16 6 1.9144 -0.8177 -3.7447 17 6 3.3878 -0.4183 -3.8519 18 6 4.1461 -0.9466 -2.6302 19 7 3.4773 -0.4649 -1.4139 20 6 4.1703 0.1945 -0.4644 21 8 3.6239 0.5188 0.5721 22 6 5.5936 0.5234 -0.6833 23 6 6.4126 1.3201 0.1539 24 6 7.6197 1.3401 -0.4434 25 7 7.5324 0.5992 -1.5746 26 7 6.3424 0.1317 -1.6956 27 6 8.6523 0.3834 -2.5020 28 6 9.7267 1.4419 -2.2367 29 6 10.0624 1.4698 -0.7427 30 6 8.8663 2.0459 0.0278 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.3902 -1.5836 1.1227 35 1 3.2414 -2.3988 4.2433 36 1 1.4044 0.8937 -2.5385 37 1 0.2488 -0.4558 -2.4261 38 1 1.3773 -0.4643 -4.6249 39 1 1.8359 -1.9032 -3.6833 40 1 3.4685 0.6681 -3.8885 41 1 3.8156 -0.8460 -4.7586 42 1 5.1730 -0.5814 -2.6515 43 1 4.1456 -2.0365 -2.6403 44 1 6.1292 1.8082 1.0746 45 1 8.2982 0.4722 -3.5290 46 1 9.0722 -0.6102 -2.3452 47 1 10.6241 1.1987 -2.8058 48 1 9.3563 2.4199 -2.5437 49 1 10.2672 0.4569 -0.3960 50 1 10.9381 2.0972 -0.5774 51 1 8.7805 3.1145 -0.1690 52 1 9.0025 1.8778 1.0961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712999062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:57 Heat of formation + Delta-G solvation = 78.229496 kcal Electronic energy + Delta-G solvation = -32725.355251 eV Core-core repulsion = 28727.619418 eV Total energy + Delta-G solvation = -3997.735832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.76645 -41.26427 -38.17134 -37.56808 -36.74438 -34.20302 -33.99254 -33.64888 -31.57630 -31.11584 -29.58894 -29.33879 -26.85960 -25.91710 -25.29834 -24.17522 -23.74162 -22.99619 -21.61544 -21.39211 -20.57472 -19.72707 -18.69654 -17.93667 -17.47889 -17.05503 -16.80673 -16.68853 -15.82207 -15.50296 -15.44213 -15.36431 -15.10097 -14.99410 -14.87831 -14.65896 -14.55523 -14.43579 -14.18233 -13.82437 -13.69815 -13.53023 -13.36986 -12.95736 -12.84951 -12.74595 -12.61249 -12.52052 -12.29080 -12.12812 -11.99149 -11.86874 -11.84332 -11.71378 -11.67192 -11.53020 -11.23083 -10.80061 -10.69199 -10.07763 -9.89484 -9.86584 -9.32989 -8.54097 -7.74206 -4.91947 0.67817 1.19549 1.42770 1.48171 1.52949 1.53142 2.25013 2.64722 2.68243 3.30178 3.55773 3.58714 3.71271 3.80557 3.86558 3.88113 3.94753 4.09132 4.17254 4.29540 4.32944 4.33633 4.39484 4.42295 4.49015 4.54397 4.63736 4.72708 4.74566 4.78049 4.87110 4.89717 4.91843 4.97058 5.02004 5.05216 5.09325 5.11885 5.13791 5.14689 5.18702 5.26012 5.31165 5.42016 5.43600 5.52249 5.60522 5.63592 5.91395 6.09916 6.46441 6.67189 7.02308 7.51080 7.62181 8.30548 8.54374 9.51525 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.004585 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.581936 B = 6105.105740 C = 8768.089074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 H 0.033 0.967 4 N -0.696 5.696 5 C -0.167 4.167 6 H 0.055 0.945 7 C -0.094 4.094 8 N -0.983 5.983 9 Si 0.959 3.041 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.291 1.291 13 C 0.149 3.851 14 H 0.054 0.946 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.120 4.120 18 C 0.071 3.929 19 N -0.601 5.601 20 C 0.548 3.452 21 O -0.487 6.487 22 C -0.025 4.025 23 C -0.217 4.217 24 C 0.029 3.971 25 N -0.282 5.282 26 N -0.267 5.267 27 C 0.106 3.894 28 C -0.127 4.127 29 C -0.123 4.123 30 C -0.054 4.054 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.361 0.639 35 H 0.240 0.760 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.053 0.947 44 H 0.138 0.862 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.127 0.873 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.101 0.899 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.924 6.871 -22.373 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 H 0.050 0.950 4 N -0.334 5.334 5 C -0.300 4.300 6 H 0.073 0.927 7 C -0.283 4.283 8 N -0.638 5.638 9 Si 0.791 3.209 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.218 1.218 13 C 0.045 3.955 14 H 0.072 0.928 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.052 4.052 19 N -0.336 5.336 20 C 0.333 3.667 21 O -0.356 6.356 22 C -0.183 4.183 23 C -0.245 4.245 24 C -0.096 4.096 25 N -0.071 5.071 26 N -0.103 5.103 27 C -0.011 4.011 28 C -0.165 4.165 29 C -0.161 4.161 30 C -0.092 4.092 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.192 0.808 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.071 0.929 44 H 0.156 0.844 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.145 0.855 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.125 0.875 51 H 0.120 0.880 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.661 6.557 -22.751 27.848 hybrid contribution -0.194 0.152 2.407 2.419 sum 14.467 6.709 -20.344 25.849 Atomic orbital electron populations 1.22408 0.97559 1.00949 1.00757 1.20502 0.91723 0.95407 0.85241 0.94951 1.42336 1.72191 1.16213 1.02656 1.19203 1.27973 0.97125 0.85749 0.92669 1.25231 1.04564 0.97915 1.00581 1.69814 1.51618 1.14506 1.27834 0.85371 0.77503 0.77000 0.81054 1.20663 1.22462 1.21824 1.21552 0.79724 0.98404 0.95783 0.92801 1.22037 1.00040 1.00504 0.93113 1.21541 0.95612 1.00780 0.97280 1.21822 0.95795 1.00805 0.97428 1.22767 1.00822 0.98497 0.83130 1.47800 1.08797 1.56681 1.20356 1.17723 0.84369 0.80849 0.83765 1.91297 1.67624 1.51143 1.25568 1.22237 0.95584 1.04648 0.95865 1.21369 0.93489 1.06665 1.02984 1.21638 0.98030 1.00057 0.89898 1.46422 1.08151 1.34211 1.18308 1.72857 0.92711 1.21563 1.23144 1.22646 0.83081 1.02632 0.92786 1.21971 0.98506 0.98447 0.97615 1.21725 0.97563 1.02465 0.94304 1.20566 0.87835 0.99593 1.01244 0.94928 0.90432 0.93551 0.80821 0.95160 0.92067 0.89129 0.89460 0.91626 0.92657 0.88674 0.84826 0.92905 0.84388 0.86701 0.87922 0.85485 0.90311 0.91577 0.87516 0.88042 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.18 8.66 71.98 0.62 -5.56 16 2 C 0.18 8.23 1.83 44.99 0.08 8.31 16 3 H 0.03 1.67 6.37 -2.39 -0.02 1.66 16 4 N -0.70 -39.88 3.23 -322.92 -1.04 -40.92 16 5 C -0.17 -10.54 8.23 84.03 0.69 -9.85 16 6 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 7 C -0.09 -6.05 5.50 84.86 0.47 -5.58 16 8 N -0.98 -67.13 13.06 21.65 0.28 -66.85 16 9 Si 0.96 52.35 29.55 68.60 2.03 54.38 16 10 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 11 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 12 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16 13 C 0.15 5.59 2.63 45.12 0.12 5.71 16 14 H 0.05 2.14 8.11 -2.39 -0.02 2.12 16 15 C -0.12 -3.21 4.45 30.82 0.14 -3.08 16 16 C -0.11 -2.43 5.88 30.62 0.18 -2.25 16 17 C -0.12 -2.66 6.08 30.67 0.19 -2.47 16 18 C 0.07 2.10 6.31 86.36 0.55 2.64 16 19 N -0.60 -23.10 2.97 -797.74 -2.37 -25.47 16 20 C 0.55 25.28 7.44 86.75 0.65 25.92 16 21 O -0.49 -27.05 9.84 -3.93 -0.04 -27.08 16 22 C -0.02 -0.99 6.90 42.49 0.29 -0.69 16 23 C -0.22 -8.15 10.76 22.30 0.24 -7.91 16 24 C 0.03 0.79 6.57 41.21 0.27 1.06 16 25 N -0.28 -7.03 3.74 -333.35 -1.25 -8.28 16 26 N -0.27 -8.57 8.36 -48.05 -0.40 -8.97 16 27 C 0.11 1.34 7.17 86.33 0.62 1.96 16 28 C -0.13 -0.88 5.91 30.69 0.18 -0.69 16 29 C -0.12 -1.16 5.98 30.81 0.18 -0.98 16 30 C -0.05 -0.90 6.28 30.04 0.19 -0.71 16 31 H 0.03 1.39 8.02 -2.39 -0.02 1.38 16 32 H 0.08 2.41 6.45 -2.39 -0.02 2.39 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.36 22.57 7.69 -92.71 -0.71 21.86 16 35 H 0.24 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.09 2.18 6.71 -2.39 -0.02 2.17 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.14 4.03 3.71 -86.99 -0.32 3.71 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.14 5.59 8.06 -2.91 -0.02 5.57 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 47 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 48 H 0.08 0.58 8.11 -2.39 -0.02 0.56 16 49 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 50 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 52 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -87.47 392.00 2.76 -84.71 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.11 Total: 32.64 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.66 Total: 5.85 kcal Atomic # 7 Polarization: -145.72 SS G_CDS: -4.77 Total: -150.49 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.08 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.03 Total: 54.38 kcal Total: -87.47 2.76 -84.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712999062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.944 kcal (2) G-P(sol) polarization free energy of solvation -87.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds