Wall clock time and date at job start Wed Apr 1 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47404 * 2 1 4 4 N 1.46501 * 109.47004 * 239.99238 * 2 1 3 5 5 C 1.36932 * 119.99666 * 85.00207 * 4 2 1 6 6 H 1.08000 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99479 * 179.72251 * 5 4 2 8 8 N 1.31613 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99597 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47238 * 90.00430 * 9 7 5 11 11 H 1.48506 * 109.46755 * 210.00416 * 9 7 5 12 12 H 1.48497 * 109.47153 * 329.99822 * 9 7 5 13 13 C 1.53007 * 109.46789 * 119.99495 * 2 1 3 14 14 H 1.08992 * 109.58524 * 302.40279 * 13 2 1 15 15 C 1.53189 * 109.58640 * 62.83313 * 13 2 1 16 16 C 1.53039 * 109.31535 * 174.42201 * 15 13 2 17 17 C 1.53043 * 109.53533 * 298.63537 * 16 15 13 18 18 C 1.53185 * 109.31623 * 61.36216 * 17 16 15 19 19 N 1.46923 * 109.58376 * 182.11850 * 13 2 1 20 20 C 1.34772 * 120.63151 * 6.62577 * 19 13 2 21 21 O 1.21570 * 120.00482 * 5.99298 * 20 19 13 22 22 C 1.47718 * 119.99977 * 185.98816 * 20 19 13 23 23 C 1.41639 * 126.49731 * 173.95493 * 22 20 19 24 24 C 1.34701 * 105.34063 * 179.97438 * 23 22 20 25 25 N 1.35505 * 107.70656 * 0.02696 * 24 23 22 26 26 N 1.28428 * 109.72207 * 359.70665 * 25 24 23 27 27 C 1.46997 * 123.90205 * 179.97438 * 25 24 23 28 28 C 1.53143 * 108.88676 * 342.34304 * 27 25 24 29 29 C 1.53146 * 109.60249 * 51.11332 * 28 27 25 30 30 C 1.50793 * 127.54130 * 180.02562 * 24 23 22 31 31 H 1.08998 * 109.47234 * 294.95287 * 1 2 3 32 32 H 1.09000 * 109.46839 * 54.95002 * 1 2 3 33 33 H 1.08994 * 109.47339 * 174.95234 * 1 2 3 34 34 H 0.97000 * 119.99890 * 265.00179 * 4 2 1 35 35 H 0.97004 * 120.00000 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.49671 * 294.37145 * 15 13 2 37 37 H 1.08998 * 109.49990 * 54.46904 * 15 13 2 38 38 H 1.09000 * 109.46678 * 178.61083 * 16 15 13 39 39 H 1.08996 * 109.45982 * 58.65031 * 16 15 13 40 40 H 1.09001 * 109.49448 * 301.41054 * 17 16 15 41 41 H 1.09003 * 109.49745 * 181.31391 * 17 16 15 42 42 H 1.08996 * 109.59226 * 185.58108 * 18 17 16 43 43 H 1.09000 * 109.70422 * 65.22225 * 18 17 16 44 44 H 1.08001 * 127.33139 * 359.95621 * 23 22 20 45 45 H 1.08992 * 109.56932 * 102.16956 * 27 25 24 46 46 H 1.09002 * 109.56853 * 222.52496 * 27 25 24 47 47 H 1.09001 * 109.44530 * 171.15611 * 28 27 25 48 48 H 1.09002 * 109.44987 * 291.09624 * 28 27 25 49 49 H 1.09006 * 109.54576 * 50.28250 * 29 28 27 50 50 H 1.09003 * 109.54102 * 170.53257 * 29 28 27 51 51 H 1.08997 * 109.71975 * 284.10616 * 30 24 23 52 52 H 1.09002 * 109.71531 * 44.75469 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1491 -0.0078 -2.3757 6 1 1.8927 1.0402 -2.4242 7 6 2.6172 -0.6609 -3.5076 8 7 2.9349 -1.9367 -3.4471 9 14 2.7963 0.2710 -5.1166 10 1 4.1565 0.8611 -5.1981 11 1 2.5923 -0.6616 -6.2541 12 1 1.7823 1.3542 -5.1768 13 6 2.0399 -0.7212 1.2494 14 1 1.6429 -0.2342 2.1400 15 6 1.5898 -2.1851 1.2170 16 6 2.2176 -2.9339 2.3948 17 6 3.7426 -2.8946 2.2719 18 6 4.2172 -1.4388 2.3162 19 7 3.5083 -0.6785 1.2778 20 6 4.1919 0.0446 0.3689 21 8 3.5950 0.7554 -0.4161 22 6 5.6668 -0.0264 0.3266 23 6 6.5119 0.5748 -0.6380 24 6 7.7645 0.2408 -0.2721 25 7 7.6784 -0.5178 0.8474 26 7 6.4465 -0.6568 1.1830 27 6 8.8420 -1.0767 1.5506 28 6 10.0500 -1.0491 0.6098 29 6 10.2090 0.3548 0.0189 30 6 9.0537 0.6211 -0.9557 31 1 -0.3633 0.4335 0.9317 32 1 -0.3633 0.5902 -0.8413 33 1 -0.3634 -1.0236 -0.0904 34 1 2.2490 -1.6319 -1.1524 35 1 3.2617 -2.3932 -4.2382 36 1 0.5035 -2.2334 1.2926 37 1 1.9106 -2.6438 0.2817 38 1 1.8793 -3.9700 2.3884 39 1 1.9163 -2.4596 3.3288 40 1 4.0431 -3.3466 1.3267 41 1 4.1885 -3.4480 3.0984 42 1 5.2903 -1.3985 2.1301 43 1 3.9997 -1.0110 3.2949 44 1 6.2151 1.1733 -1.4866 45 1 9.0552 -0.4785 2.4364 46 1 8.6316 -2.1051 1.8445 47 1 10.9494 -1.3127 1.1663 48 1 9.8987 -1.7668 -0.1964 49 1 10.1880 1.0927 0.8210 50 1 11.1577 0.4208 -0.5139 51 1 9.1840 0.0199 -1.8555 52 1 9.0322 1.6785 -1.2191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712999064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:04 Heat of formation + Delta-G solvation = 97.218341 kcal Electronic energy + Delta-G solvation = -33141.858899 eV Core-core repulsion = 29144.946485 eV Total energy + Delta-G solvation = -3996.912414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53048 -39.75845 -36.90708 -36.43937 -34.94985 -32.95688 -32.31326 -32.02377 -30.14313 -29.38585 -28.56448 -27.87531 -25.41896 -24.34235 -23.73991 -23.05413 -22.49372 -21.86798 -20.46271 -19.68546 -19.38913 -17.94723 -16.88756 -16.78168 -16.31685 -15.77752 -15.32295 -14.65335 -14.48234 -14.35009 -14.32757 -14.06731 -13.98349 -13.81108 -13.51126 -13.36401 -13.24082 -12.75809 -12.65304 -12.45542 -12.15008 -12.06607 -11.88918 -11.59404 -11.42963 -11.33587 -11.24455 -11.18499 -11.02145 -10.92461 -10.60851 -10.49634 -10.38626 -10.36972 -9.99265 -9.73029 -9.39865 -9.24328 -8.76919 -8.62412 -8.51507 -8.11118 -7.75141 -6.48099 -5.40017 -2.61623 2.01894 2.55551 2.58941 3.63609 3.66176 3.68096 3.70025 4.16291 4.27317 4.37569 4.45399 4.59976 4.90357 4.93357 4.97239 5.11660 5.14611 5.25413 5.28522 5.34284 5.35834 5.46787 5.54452 5.57685 5.63119 5.73450 5.78156 5.86634 5.88349 5.89872 5.96366 6.01595 6.05226 6.17734 6.19551 6.30706 6.33635 6.37892 6.45598 6.50700 6.59561 6.64196 6.74635 6.86513 7.03164 7.10632 7.17938 7.31990 7.60688 8.09984 8.17773 8.35919 8.78803 9.20971 9.90012 10.48189 10.84557 11.84530 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.005026 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.764987 B = 5570.193840 C = 7793.128838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.164 3.836 3 H 0.087 0.913 4 N -0.706 5.706 5 C -0.174 4.174 6 H 0.065 0.935 7 C -0.030 4.030 8 N -0.947 5.947 9 Si 0.897 3.103 10 H -0.296 1.296 11 H -0.299 1.299 12 H -0.287 1.287 13 C 0.147 3.853 14 H 0.061 0.939 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.078 3.922 19 N -0.601 5.601 20 C 0.589 3.411 21 O -0.455 6.455 22 C 0.016 3.984 23 C -0.167 4.167 24 C 0.008 3.992 25 N -0.294 5.294 26 N -0.275 5.275 27 C 0.124 3.876 28 C -0.136 4.136 29 C -0.125 4.125 30 C -0.051 4.051 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.378 0.622 35 H 0.246 0.754 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.136 0.864 43 H 0.049 0.951 44 H 0.160 0.840 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.888 0.529 15.245 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 H 0.104 0.896 4 N -0.348 5.348 5 C -0.306 4.306 6 H 0.083 0.917 7 C -0.223 4.223 8 N -0.600 5.600 9 Si 0.730 3.270 10 H -0.225 1.225 11 H -0.226 1.226 12 H -0.213 1.213 13 C 0.044 3.956 14 H 0.079 0.921 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.046 4.046 19 N -0.336 5.336 20 C 0.374 3.626 21 O -0.323 6.323 22 C -0.145 4.145 23 C -0.195 4.195 24 C -0.116 4.116 25 N -0.082 5.082 26 N -0.108 5.108 27 C 0.004 3.996 28 C -0.175 4.175 29 C -0.163 4.163 30 C -0.090 4.090 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.213 0.787 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.068 0.932 44 H 0.178 0.822 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.104 0.896 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.644 0.392 15.679 20.788 hybrid contribution 0.194 0.222 -1.563 1.591 sum 13.838 0.614 14.116 19.777 Atomic orbital electron populations 1.22581 1.00236 1.00773 0.99307 1.20772 0.90229 0.98222 0.85344 0.89570 1.42412 1.77437 1.09712 1.05224 1.19117 1.31853 0.93189 0.86426 0.91681 1.24544 1.04178 0.95997 0.97555 1.69650 1.53586 1.08707 1.28038 0.86285 0.77545 0.78455 0.84676 1.22452 1.22569 1.21268 1.21553 0.78904 0.95838 0.99342 0.92139 1.21967 1.00067 0.95699 0.99204 1.21521 0.95567 0.99959 0.98426 1.21862 0.96013 0.97138 1.01898 1.22548 1.01514 0.90370 0.90215 1.47623 1.05963 1.49143 1.30889 1.16916 0.83299 0.81786 0.80641 1.90947 1.65905 1.38161 1.37279 1.22383 0.94959 1.01573 0.95569 1.21336 0.89939 1.05845 1.02365 1.21141 0.97247 1.00796 0.92396 1.45796 1.04826 1.37465 1.20145 1.72911 0.89569 1.22821 1.25545 1.22006 0.81976 1.00414 0.95243 1.21924 0.96899 0.98867 0.99780 1.21680 0.98844 0.96355 0.99376 1.20318 0.88373 1.02736 0.97548 0.94958 0.92946 0.93649 0.78711 0.94424 0.91238 0.90381 0.92479 0.92609 0.91606 0.91996 0.84767 0.93233 0.82202 0.89458 0.88563 0.89092 0.90359 0.91241 0.90355 0.89623 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.07 37.16 0.34 -2.96 16 2 C 0.16 3.59 1.89 -67.93 -0.13 3.46 16 3 H 0.09 2.07 5.86 -52.25 -0.31 1.77 16 4 N -0.71 -18.59 3.49 -53.43 -0.19 -18.78 16 5 C -0.17 -5.12 8.11 -15.06 -0.12 -5.24 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.03 -0.91 5.50 -17.43 -0.10 -1.01 16 8 N -0.95 -30.27 13.06 55.49 0.72 -29.55 16 9 Si 0.90 24.22 29.55 -169.99 -5.02 19.19 16 10 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 11 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 12 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 13 C 0.15 2.72 2.74 -67.60 -0.19 2.53 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.13 -2.24 4.81 -26.61 -0.13 -2.37 16 16 C -0.12 -1.65 5.88 -26.69 -0.16 -1.81 16 17 C -0.13 -1.89 6.08 -26.61 -0.16 -2.06 16 18 C 0.08 1.22 6.33 -3.71 -0.02 1.19 16 19 N -0.60 -11.36 2.96 -166.38 -0.49 -11.86 16 20 C 0.59 12.86 7.12 -12.39 -0.09 12.77 16 21 O -0.46 -11.40 10.10 5.30 0.05 -11.35 16 22 C 0.02 0.31 6.91 -82.68 -0.57 -0.26 16 23 C -0.17 -3.11 10.76 -39.54 -0.43 -3.53 16 24 C 0.01 0.12 6.57 -82.18 -0.54 -0.42 16 25 N -0.29 -4.07 3.74 -56.72 -0.21 -4.28 16 26 N -0.27 -4.58 8.37 33.46 0.28 -4.30 16 27 C 0.12 1.07 7.17 -3.70 -0.03 1.04 16 28 C -0.14 -0.90 5.91 -26.58 -0.16 -1.06 16 29 C -0.12 -0.87 5.98 -26.41 -0.16 -1.03 16 30 C -0.05 -0.52 6.28 -27.59 -0.17 -0.69 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.88 6.91 -51.93 -0.36 0.52 16 34 H 0.38 10.66 5.83 -40.82 -0.24 10.42 16 35 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 1.11 6.93 -51.93 -0.36 0.75 16 37 H 0.08 1.62 6.21 -51.93 -0.32 1.30 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 2.16 3.69 -118.47 -0.44 1.72 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.16 3.09 8.06 -52.49 -0.42 2.66 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 49 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -35.63 389.55 -10.54 -46.18 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.75 Total: 10.31 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.80 Total: -1.43 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: 0.11 Total: -68.77 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.05 Total: -11.35 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.63 -10.54 -46.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712999064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.395 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds