Wall clock time and date at job start Wed Apr 1 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47404 * 2 1 4 4 N 1.46501 * 109.47004 * 239.99238 * 2 1 3 5 5 C 1.36932 * 119.99666 * 85.00207 * 4 2 1 6 6 H 1.08000 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99479 * 179.72251 * 5 4 2 8 8 N 1.31613 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99597 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47238 * 90.00430 * 9 7 5 11 11 H 1.48506 * 109.46755 * 210.00416 * 9 7 5 12 12 H 1.48497 * 109.47153 * 329.99822 * 9 7 5 13 13 C 1.53007 * 109.46789 * 119.99495 * 2 1 3 14 14 H 1.08992 * 109.58524 * 302.40279 * 13 2 1 15 15 C 1.53189 * 109.58640 * 62.83313 * 13 2 1 16 16 C 1.53039 * 109.31535 * 174.42201 * 15 13 2 17 17 C 1.53043 * 109.53533 * 298.63537 * 16 15 13 18 18 C 1.53185 * 109.31623 * 61.36216 * 17 16 15 19 19 N 1.46923 * 109.58376 * 182.11850 * 13 2 1 20 20 C 1.34772 * 120.63151 * 6.62577 * 19 13 2 21 21 O 1.21570 * 120.00482 * 5.99298 * 20 19 13 22 22 C 1.47718 * 119.99977 * 185.98816 * 20 19 13 23 23 C 1.41639 * 126.49731 * 173.95493 * 22 20 19 24 24 C 1.34701 * 105.34063 * 179.97438 * 23 22 20 25 25 N 1.35505 * 107.70656 * 0.02696 * 24 23 22 26 26 N 1.28428 * 109.72207 * 359.70665 * 25 24 23 27 27 C 1.46997 * 123.90205 * 179.97438 * 25 24 23 28 28 C 1.53143 * 108.88676 * 342.34304 * 27 25 24 29 29 C 1.53146 * 109.60249 * 51.11332 * 28 27 25 30 30 C 1.50793 * 127.54130 * 180.02562 * 24 23 22 31 31 H 1.08998 * 109.47234 * 294.95287 * 1 2 3 32 32 H 1.09000 * 109.46839 * 54.95002 * 1 2 3 33 33 H 1.08994 * 109.47339 * 174.95234 * 1 2 3 34 34 H 0.97000 * 119.99890 * 265.00179 * 4 2 1 35 35 H 0.97004 * 120.00000 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.49671 * 294.37145 * 15 13 2 37 37 H 1.08998 * 109.49990 * 54.46904 * 15 13 2 38 38 H 1.09000 * 109.46678 * 178.61083 * 16 15 13 39 39 H 1.08996 * 109.45982 * 58.65031 * 16 15 13 40 40 H 1.09001 * 109.49448 * 301.41054 * 17 16 15 41 41 H 1.09003 * 109.49745 * 181.31391 * 17 16 15 42 42 H 1.08996 * 109.59226 * 185.58108 * 18 17 16 43 43 H 1.09000 * 109.70422 * 65.22225 * 18 17 16 44 44 H 1.08001 * 127.33139 * 359.95621 * 23 22 20 45 45 H 1.08992 * 109.56932 * 102.16956 * 27 25 24 46 46 H 1.09002 * 109.56853 * 222.52496 * 27 25 24 47 47 H 1.09001 * 109.44530 * 171.15611 * 28 27 25 48 48 H 1.09002 * 109.44987 * 291.09624 * 28 27 25 49 49 H 1.09006 * 109.54576 * 50.28250 * 29 28 27 50 50 H 1.09003 * 109.54102 * 170.53257 * 29 28 27 51 51 H 1.08997 * 109.71975 * 284.10616 * 30 24 23 52 52 H 1.09002 * 109.71531 * 44.75469 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1491 -0.0078 -2.3757 6 1 1.8927 1.0402 -2.4242 7 6 2.6172 -0.6609 -3.5076 8 7 2.9349 -1.9367 -3.4471 9 14 2.7963 0.2710 -5.1166 10 1 4.1565 0.8611 -5.1981 11 1 2.5923 -0.6616 -6.2541 12 1 1.7823 1.3542 -5.1768 13 6 2.0399 -0.7212 1.2494 14 1 1.6429 -0.2342 2.1400 15 6 1.5898 -2.1851 1.2170 16 6 2.2176 -2.9339 2.3948 17 6 3.7426 -2.8946 2.2719 18 6 4.2172 -1.4388 2.3162 19 7 3.5083 -0.6785 1.2778 20 6 4.1919 0.0446 0.3689 21 8 3.5950 0.7554 -0.4161 22 6 5.6668 -0.0264 0.3266 23 6 6.5119 0.5748 -0.6380 24 6 7.7645 0.2408 -0.2721 25 7 7.6784 -0.5178 0.8474 26 7 6.4465 -0.6568 1.1830 27 6 8.8420 -1.0767 1.5506 28 6 10.0500 -1.0491 0.6098 29 6 10.2090 0.3548 0.0189 30 6 9.0537 0.6211 -0.9557 31 1 -0.3633 0.4335 0.9317 32 1 -0.3633 0.5902 -0.8413 33 1 -0.3634 -1.0236 -0.0904 34 1 2.2490 -1.6319 -1.1524 35 1 3.2617 -2.3932 -4.2382 36 1 0.5035 -2.2334 1.2926 37 1 1.9106 -2.6438 0.2817 38 1 1.8793 -3.9700 2.3884 39 1 1.9163 -2.4596 3.3288 40 1 4.0431 -3.3466 1.3267 41 1 4.1885 -3.4480 3.0984 42 1 5.2903 -1.3985 2.1301 43 1 3.9997 -1.0110 3.2949 44 1 6.2151 1.1733 -1.4866 45 1 9.0552 -0.4785 2.4364 46 1 8.6316 -2.1051 1.8445 47 1 10.9494 -1.3127 1.1663 48 1 9.8987 -1.7668 -0.1964 49 1 10.1880 1.0927 0.8210 50 1 11.1577 0.4208 -0.5139 51 1 9.1840 0.0199 -1.8555 52 1 9.0322 1.6785 -1.2191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712999064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:02 Heat of formation + Delta-G solvation = 74.302264 kcal Electronic energy + Delta-G solvation = -33142.852615 eV Core-core repulsion = 29144.946485 eV Total energy + Delta-G solvation = -3997.906130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.75348 -41.29020 -38.18925 -37.54871 -36.68759 -34.14608 -33.97828 -33.65095 -31.47719 -30.96359 -29.67225 -29.55440 -26.75332 -25.76668 -25.34254 -24.51556 -23.72232 -22.99108 -21.77130 -21.27212 -20.45232 -19.37573 -18.99449 -17.93359 -17.48961 -17.09399 -16.87884 -16.29145 -15.86147 -15.67256 -15.49326 -15.40577 -15.08492 -15.03373 -14.94086 -14.70409 -14.57381 -14.34492 -14.06032 -13.85138 -13.68290 -13.41038 -13.22349 -13.02486 -12.81029 -12.79880 -12.61940 -12.53806 -12.29407 -12.12354 -11.99498 -11.86565 -11.85677 -11.73641 -11.69002 -11.46618 -11.29862 -10.83643 -10.70207 -9.92838 -9.87569 -9.81594 -9.31072 -8.63161 -7.75452 -4.94733 0.68804 1.20748 1.41766 1.45331 1.52309 1.54172 2.22806 2.67054 2.72239 3.29620 3.56805 3.58617 3.73108 3.80346 3.89341 3.94685 3.99144 4.09017 4.13510 4.28771 4.32690 4.36111 4.42234 4.43973 4.46591 4.54865 4.65953 4.73900 4.76637 4.80747 4.85968 4.90129 4.93414 4.97241 5.00569 5.04728 5.08800 5.11366 5.15331 5.15953 5.25599 5.29166 5.30672 5.43341 5.50755 5.57864 5.64015 5.68699 5.93158 6.11748 6.47389 6.69176 7.02944 7.51915 7.62601 8.31866 8.56392 9.49745 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.005026 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.764987 B = 5570.193840 C = 7793.128838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.061 0.939 4 N -0.708 5.708 5 C -0.159 4.159 6 H 0.053 0.947 7 C -0.093 4.093 8 N -0.981 5.981 9 Si 0.954 3.046 10 H -0.299 1.299 11 H -0.298 1.298 12 H -0.277 1.277 13 C 0.148 3.852 14 H 0.092 0.908 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.125 4.125 18 C 0.073 3.927 19 N -0.599 5.599 20 C 0.578 3.422 21 O -0.509 6.509 22 C -0.024 4.024 23 C -0.215 4.215 24 C 0.027 3.973 25 N -0.282 5.282 26 N -0.265 5.265 27 C 0.108 3.892 28 C -0.132 4.132 29 C -0.119 4.119 30 C -0.055 4.055 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.366 0.634 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.130 0.870 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.105 0.895 51 H 0.088 0.912 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.858 -0.083 18.415 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.079 0.921 4 N -0.348 5.348 5 C -0.292 4.292 6 H 0.071 0.929 7 C -0.282 4.282 8 N -0.637 5.637 9 Si 0.787 3.213 10 H -0.227 1.227 11 H -0.225 1.225 12 H -0.202 1.202 13 C 0.044 3.956 14 H 0.109 0.891 15 C -0.163 4.163 16 C -0.147 4.147 17 C -0.164 4.164 18 C -0.050 4.050 19 N -0.334 5.334 20 C 0.364 3.636 21 O -0.381 6.381 22 C -0.183 4.183 23 C -0.243 4.243 24 C -0.099 4.099 25 N -0.071 5.071 26 N -0.101 5.101 27 C -0.010 4.010 28 C -0.170 4.170 29 C -0.156 4.156 30 C -0.094 4.094 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.200 0.800 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.095 0.905 44 H 0.152 0.848 45 H 0.132 0.868 46 H 0.127 0.873 47 H 0.148 0.852 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.123 0.877 51 H 0.106 0.894 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.601 -0.220 18.927 24.529 hybrid contribution -0.315 0.447 -2.400 2.461 sum 15.286 0.226 16.528 22.514 Atomic orbital electron populations 1.22395 0.98054 1.00789 1.00481 1.20858 0.91560 0.97040 0.85470 0.92111 1.42470 1.77416 1.09055 1.05842 1.19254 1.29740 0.92583 0.87672 0.92864 1.25179 1.05528 0.96938 1.00579 1.69808 1.55595 1.10010 1.28260 0.85351 0.77351 0.77477 0.81146 1.22698 1.22530 1.20207 1.21581 0.78927 0.96660 0.98387 0.89051 1.21889 1.01075 0.94630 0.98698 1.21502 0.94736 1.00613 0.97862 1.21833 0.96725 0.96281 1.01520 1.22773 1.01192 0.90894 0.90150 1.47772 1.06285 1.48504 1.30819 1.17369 0.84406 0.81384 0.80480 1.90899 1.67209 1.40517 1.39460 1.22205 0.94521 1.04090 0.97457 1.21343 0.92172 1.07990 1.02820 1.21606 0.97514 0.98810 0.91922 1.46416 1.05178 1.35822 1.19662 1.72838 0.90574 1.21982 1.24701 1.22645 0.80647 1.01352 0.96344 1.21992 0.97187 0.98317 0.99454 1.21704 0.98207 0.96769 0.98917 1.20560 0.87405 1.03209 0.98214 0.91051 0.95053 0.93516 0.80021 0.95214 0.89831 0.94796 0.90998 0.89742 0.95017 0.88410 0.85161 0.90546 0.84782 0.86841 0.87330 0.85199 0.91408 0.90521 0.87697 0.89415 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.13 9.07 71.98 0.65 -5.48 16 2 C 0.16 7.19 1.89 44.99 0.08 7.27 16 3 H 0.06 3.10 5.86 -7.41 -0.04 3.05 16 4 N -0.71 -39.35 3.49 -322.94 -1.13 -40.48 16 5 C -0.16 -9.91 8.11 84.03 0.68 -9.23 16 6 H 0.05 3.38 7.83 -2.91 -0.02 3.35 16 7 C -0.09 -5.94 5.50 84.86 0.47 -5.47 16 8 N -0.98 -65.87 13.06 21.65 0.28 -65.59 16 9 Si 0.95 52.18 29.55 68.60 2.03 54.21 16 10 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 11 H -0.30 -16.16 7.11 99.48 0.71 -15.45 16 12 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 13 C 0.15 5.41 2.74 44.98 0.12 5.53 16 14 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 15 C -0.12 -4.17 4.81 30.67 0.15 -4.02 16 16 C -0.11 -2.78 5.88 30.62 0.18 -2.60 16 17 C -0.13 -3.39 6.08 30.67 0.19 -3.20 16 18 C 0.07 2.17 6.33 86.36 0.55 2.72 16 19 N -0.60 -23.05 2.96 -798.57 -2.37 -25.42 16 20 C 0.58 26.80 7.12 86.75 0.62 27.41 16 21 O -0.51 -27.54 10.10 -3.93 -0.04 -27.58 16 22 C -0.02 -1.01 6.91 42.49 0.29 -0.71 16 23 C -0.22 -8.65 10.76 22.30 0.24 -8.41 16 24 C 0.03 0.79 6.57 41.21 0.27 1.06 16 25 N -0.28 -7.54 3.74 -333.35 -1.25 -8.78 16 26 N -0.27 -8.91 8.37 -48.06 -0.40 -9.32 16 27 C 0.11 1.52 7.17 86.33 0.62 2.14 16 28 C -0.13 -1.22 5.91 30.69 0.18 -1.03 16 29 C -0.12 -1.23 5.98 30.80 0.18 -1.05 16 30 C -0.06 -1.05 6.28 30.04 0.19 -0.86 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.79 6.91 -2.39 -0.02 1.78 16 34 H 0.37 21.94 5.83 -92.71 -0.54 21.40 16 35 H 0.24 15.72 8.31 -92.71 -0.77 14.94 16 36 H 0.08 2.53 6.93 -2.39 -0.02 2.52 16 37 H 0.03 1.44 6.21 -2.39 -0.01 1.43 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.13 4.08 3.69 -88.46 -0.33 3.76 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.13 5.88 8.06 -2.91 -0.02 5.85 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.07 0.82 8.11 -2.39 -0.02 0.80 16 49 H 0.08 0.74 8.12 -2.38 -0.02 0.72 16 50 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -85.77 389.55 2.83 -82.94 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.03 Total: 35.95 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.67 Total: 4.06 kcal Atomic # 7 Polarization: -144.72 SS G_CDS: -4.86 Total: -149.58 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.04 Total: -27.58 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.03 Total: 54.21 kcal Total: -85.77 2.83 -82.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712999064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.241 kcal (2) G-P(sol) polarization free energy of solvation -85.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds