Wall clock time and date at job start Wed Apr 1 2020 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00043 * 2 1 3 5 5 C 1.36935 * 120.00170 * 85.00337 * 4 2 1 6 6 H 1.07997 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99814 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00597 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99710 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47262 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47171 * 119.99800 * 9 7 5 12 12 H 1.48500 * 109.47414 * 239.99653 * 9 7 5 13 13 C 1.53004 * 109.47389 * 119.99716 * 2 1 3 14 14 H 1.09000 * 109.69781 * 303.05633 * 13 2 1 15 15 C 1.53630 * 109.65991 * 63.64008 * 13 2 1 16 16 C 1.53039 * 109.23993 * 174.54962 * 15 13 2 17 17 C 1.53039 * 109.54187 * 298.51383 * 16 15 13 18 18 C 1.53199 * 109.31182 * 61.36186 * 17 16 15 19 19 N 1.46922 * 109.58813 * 182.69380 * 13 2 1 20 20 C 1.34775 * 120.63248 * 6.63143 * 19 13 2 21 21 O 1.21591 * 119.99847 * 3.78838 * 20 19 13 22 22 C 1.47538 * 119.99791 * 183.52182 * 20 19 13 23 23 C 1.40354 * 120.47465 * 145.22325 * 22 20 19 24 24 C 1.36855 * 118.49366 * 179.72812 * 23 22 20 25 25 C 1.39406 * 119.37606 * 0.55957 * 24 23 22 26 26 N 1.38451 * 119.53976 * 179.67633 * 25 24 23 27 27 C 1.46505 * 119.99638 * 5.02545 * 26 25 24 28 28 C 1.46496 * 120.00376 * 185.01823 * 26 25 24 29 29 N 1.32601 * 120.92213 * 359.69636 * 25 24 23 30 30 C 1.31683 * 121.63949 * 0.02562 * 29 25 24 31 31 H 1.09000 * 109.46935 * 54.92899 * 1 2 3 32 32 H 1.09002 * 109.47136 * 174.93001 * 1 2 3 33 33 H 1.08999 * 109.47303 * 294.92594 * 1 2 3 34 34 H 0.97005 * 119.99930 * 264.99380 * 4 2 1 35 35 H 0.96996 * 120.00396 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.63214 * 54.56056 * 15 13 2 37 37 H 1.08999 * 109.46170 * 294.43990 * 15 13 2 38 38 H 1.08998 * 109.46127 * 178.49251 * 16 15 13 39 39 H 1.09003 * 109.44760 * 58.53023 * 16 15 13 40 40 H 1.09007 * 109.49789 * 301.41832 * 17 16 15 41 41 H 1.08997 * 109.50025 * 181.31414 * 17 16 15 42 42 H 1.09002 * 109.58416 * 185.57852 * 18 17 16 43 43 H 1.09006 * 109.70042 * 65.22436 * 18 17 16 44 44 H 1.08005 * 120.75409 * 359.96972 * 23 22 20 45 45 H 1.07998 * 120.31388 * 180.23769 * 24 23 22 46 46 H 1.08995 * 109.47837 * 90.00252 * 27 26 25 47 47 H 1.09008 * 109.46702 * 209.99598 * 27 26 25 48 48 H 1.09000 * 109.47393 * 329.99567 * 27 26 25 49 49 H 1.09002 * 109.46665 * 89.99936 * 28 26 25 50 50 H 1.09001 * 109.47226 * 210.00154 * 28 26 25 51 51 H 1.09002 * 109.46958 * 330.00445 * 28 26 25 52 52 H 1.07988 * 119.74293 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6124 -0.6618 -3.5090 8 7 2.9263 -1.9386 -3.4497 9 14 2.7902 0.2699 -5.1182 10 1 2.3754 1.6822 -4.9211 11 1 4.2072 0.2280 -5.5606 12 1 1.9301 -0.3594 -6.1523 13 6 2.0400 -0.7212 1.2493 14 1 1.6348 -0.2428 2.1409 15 6 1.6067 -2.1946 1.2087 16 6 2.2346 -2.9376 2.3901 17 6 3.7598 -2.8812 2.2781 18 6 4.2177 -1.4201 2.3274 19 7 3.5078 -0.6666 1.2848 20 6 4.1898 0.0653 0.3817 21 8 3.5893 0.7431 -0.4298 22 6 5.6651 0.0487 0.3815 23 6 6.3778 0.1364 -0.8245 24 6 7.7455 0.1229 -0.7770 25 6 8.3859 0.0115 0.4562 26 7 9.7693 -0.0092 0.5075 27 6 10.5507 0.1960 -0.7146 28 6 10.4517 -0.2361 1.7838 29 7 7.6886 -0.0752 1.5807 30 6 6.3719 -0.0605 1.5799 31 1 -0.3633 0.5905 -0.8411 32 1 -0.3633 -1.0237 -0.0908 33 1 -0.3634 0.4331 0.9319 34 1 2.2491 -1.6318 -1.1526 35 1 3.2496 -2.3958 -4.2417 36 1 1.9393 -2.6485 0.2751 37 1 0.5205 -2.2557 1.2761 38 1 1.9080 -3.9775 2.3801 39 1 1.9212 -2.4676 3.3223 40 1 4.0722 -3.3286 1.3345 41 1 4.2061 -3.4304 3.1071 42 1 5.2918 -1.3676 2.1490 43 1 3.9885 -0.9959 3.3050 44 1 5.8587 0.2167 -1.7682 45 1 8.3232 0.1927 -1.6869 46 1 10.7533 1.2593 -0.8423 47 1 11.4931 -0.3468 -0.6386 48 1 9.9875 -0.1722 -1.5721 49 1 10.6122 -1.3049 1.9250 50 1 11.4127 0.2781 1.7785 51 1 9.8377 0.1497 2.5977 52 1 5.8347 -0.1334 2.5139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713001205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:31 Heat of formation + Delta-G solvation = 68.418509 kcal Electronic energy + Delta-G solvation = -32799.815072 eV Core-core repulsion = 28801.653803 eV Total energy + Delta-G solvation = -3998.161269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98529 -40.80470 -38.18616 -37.61221 -36.63874 -34.18353 -33.74450 -33.50767 -31.67460 -30.98355 -29.66119 -29.11580 -27.18054 -25.92695 -25.69904 -24.76311 -24.09232 -22.95519 -21.74149 -21.42443 -20.05995 -19.05343 -18.40768 -18.20699 -17.46096 -16.82602 -16.41514 -16.22601 -16.08416 -15.84288 -15.62560 -15.47367 -15.37322 -15.04461 -14.77627 -14.37352 -14.26760 -14.15971 -13.93472 -13.76625 -13.53541 -13.43186 -13.32378 -13.10400 -13.03214 -12.99009 -12.82866 -12.72620 -12.59837 -12.26975 -12.09617 -11.89184 -11.67845 -11.55721 -11.33640 -11.27194 -11.00340 -10.78583 -10.65447 -10.57833 -9.59964 -9.31830 -8.61283 -8.50889 -7.75134 -4.93568 0.02070 0.31781 1.42180 1.42511 1.52529 1.93839 2.07687 2.34334 2.66683 2.96485 3.42831 3.58411 3.68682 3.86734 3.94042 3.99779 4.00874 4.11408 4.14432 4.19182 4.31694 4.33715 4.40427 4.46100 4.47520 4.53019 4.64060 4.69232 4.72670 4.80504 4.85946 4.87511 4.91848 4.97739 4.99702 5.00674 5.06669 5.11791 5.16658 5.28979 5.32357 5.33650 5.44561 5.50772 5.59451 5.64062 5.70336 5.93610 6.01550 6.28083 6.48198 6.75662 6.99520 7.53147 7.69383 8.33760 8.57936 9.49901 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004703 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.698875 B = 5952.671098 C = 8224.608979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.061 0.939 4 N -0.706 5.706 5 C -0.153 4.153 6 H 0.051 0.949 7 C -0.091 4.091 8 N -0.979 5.979 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.301 1.301 12 H -0.299 1.299 13 C 0.151 3.849 14 H 0.097 0.903 15 C -0.126 4.126 16 C -0.109 4.109 17 C -0.132 4.132 18 C 0.078 3.922 19 N -0.605 5.605 20 C 0.547 3.453 21 O -0.515 6.515 22 C -0.252 4.252 23 C 0.004 3.996 24 C -0.247 4.247 25 C 0.408 3.592 26 N -0.613 5.613 27 C 0.084 3.916 28 C 0.095 3.905 29 N -0.550 5.550 30 C 0.174 3.826 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.367 0.633 35 H 0.239 0.761 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.150 0.850 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.071 0.929 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 0.340 18.738 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.079 0.921 4 N -0.346 5.346 5 C -0.287 4.287 6 H 0.069 0.931 7 C -0.281 4.281 8 N -0.635 5.635 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.229 1.229 12 H -0.227 1.227 13 C 0.047 3.953 14 H 0.115 0.885 15 C -0.165 4.165 16 C -0.146 4.146 17 C -0.170 4.170 18 C -0.043 4.043 19 N -0.340 5.340 20 C 0.335 3.665 21 O -0.390 6.390 22 C -0.261 4.261 23 C -0.022 4.022 24 C -0.271 4.271 25 C 0.172 3.828 26 N -0.325 5.325 27 C -0.058 4.058 28 C -0.047 4.047 29 N -0.268 5.268 30 C 0.016 3.984 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.167 0.833 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.108 0.892 51 H 0.090 0.910 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.191 0.832 18.969 23.119 hybrid contribution -0.472 -0.012 -2.797 2.836 sum 12.719 0.819 16.172 20.591 Atomic orbital electron populations 1.22420 0.98476 1.00636 1.00391 1.20840 0.91193 0.97124 0.85602 0.92097 1.42481 1.77256 1.09075 1.05813 1.19251 1.29307 0.92462 0.87658 0.93080 1.25094 1.05948 0.96855 1.00185 1.69792 1.55967 1.09726 1.28031 0.85360 0.76454 0.78000 0.82017 1.20403 1.22932 1.22712 1.21634 0.79060 0.96268 0.98298 0.88544 1.21975 1.00973 0.94840 0.98702 1.21485 0.94686 1.00541 0.97924 1.21901 0.96858 0.96228 1.01991 1.22736 0.98299 0.91887 0.91377 1.47820 1.06339 1.48494 1.31334 1.18256 0.86759 0.80962 0.80512 1.90935 1.68519 1.41954 1.37573 1.20752 0.94548 1.14868 0.95899 1.21049 0.94022 0.89517 0.97598 1.21221 0.94181 1.13027 0.98677 1.18628 0.86270 0.88900 0.89015 1.46447 1.00504 1.74708 1.10804 1.21988 0.96211 1.02281 0.85295 1.21733 0.97507 1.01246 0.84212 1.67347 1.08274 1.22882 1.28285 1.23414 0.88450 0.89036 0.97472 0.95349 0.93680 0.91023 0.79912 0.95204 0.94903 0.90291 0.91359 0.89339 0.94792 0.88015 0.88128 0.87819 0.87659 0.83291 0.91801 0.88321 0.91261 0.92839 0.89211 0.91026 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 9.10 71.98 0.65 -5.28 16 2 C 0.16 6.82 1.89 44.99 0.08 6.91 16 3 H 0.06 2.94 5.88 -7.44 -0.04 2.89 16 4 N -0.71 -37.49 3.51 -322.94 -1.13 -38.62 16 5 C -0.15 -9.24 8.06 84.03 0.68 -8.56 16 6 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 7 C -0.09 -5.67 5.50 84.86 0.47 -5.21 16 8 N -0.98 -63.71 13.06 21.65 0.28 -63.43 16 9 Si 0.95 51.04 29.55 68.60 2.03 53.07 16 10 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 12 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 13 C 0.15 4.91 2.75 45.12 0.12 5.04 16 14 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.13 -3.85 4.84 30.82 0.15 -3.70 16 16 C -0.11 -2.37 5.88 30.62 0.18 -2.19 16 17 C -0.13 -2.93 6.08 30.67 0.19 -2.75 16 18 C 0.08 1.78 5.00 86.36 0.43 2.21 16 19 N -0.61 -19.81 2.96 -797.91 -2.36 -22.17 16 20 C 0.55 22.44 6.92 86.70 0.60 23.04 16 21 O -0.51 -26.00 9.90 -4.00 -0.04 -26.04 16 22 C -0.25 -9.20 5.53 -19.99 -0.11 -9.31 16 23 C 0.00 0.17 9.69 22.46 0.22 0.39 16 24 C -0.25 -7.67 9.20 22.23 0.20 -7.46 16 25 C 0.41 11.26 7.36 133.26 0.98 12.24 16 26 N -0.61 -12.45 3.37 -754.08 -2.54 -14.99 16 27 C 0.08 1.20 10.27 127.77 1.31 2.51 16 28 C 0.10 1.43 10.49 127.77 1.34 2.77 16 29 N -0.55 -15.19 9.04 -194.02 -1.75 -16.95 16 30 C 0.17 4.90 8.63 85.03 0.73 5.64 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.66 6.93 -2.39 -0.02 1.65 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.37 20.98 5.80 -92.70 -0.54 20.44 16 35 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.03 1.31 6.20 -2.39 -0.01 1.29 16 37 H 0.08 2.23 6.96 -2.39 -0.02 2.21 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 2.31 3.48 -3.53 -0.01 2.30 16 43 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.11 4.90 8.05 -2.91 -0.02 4.88 16 45 H 0.15 3.96 5.99 -2.91 -0.02 3.94 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 0.88 8.07 -2.38 -0.02 0.86 16 48 H 0.07 1.08 5.95 -2.39 -0.01 1.06 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 50 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 51 H 0.07 1.24 7.28 -2.39 -0.02 1.22 16 52 H 0.20 4.25 5.39 -2.92 -0.02 4.23 16 Total: -1.00 -80.82 391.50 3.08 -77.74 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.37 Total: 35.11 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 8.23 Total: 16.27 kcal Atomic # 7 Polarization: -148.65 SS G_CDS: -7.51 Total: -156.16 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.04 Total: -26.04 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.03 Total: 53.07 kcal Total: -80.82 3.08 -77.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713001205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.161 kcal (2) G-P(sol) polarization free energy of solvation -80.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds