Wall clock time and date at job start Wed Apr 1 2020 05:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 N 1.46498 * 109.46695 * 119.99565 * 2 1 3 5 5 C 1.36941 * 120.00009 * 286.53291 * 4 2 1 6 6 H 1.08001 * 120.00273 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00091 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00115 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47257 * 120.00238 * 9 7 5 12 12 H 1.48501 * 109.46912 * 240.00152 * 9 7 5 13 13 C 1.52995 * 109.47334 * 239.99414 * 2 1 3 14 14 H 1.08998 * 109.70646 * 290.51546 * 13 2 1 15 15 C 1.53192 * 109.58625 * 50.87111 * 13 2 1 16 16 C 1.53043 * 109.31278 * 174.42176 * 15 13 2 17 17 C 1.53046 * 109.53563 * 298.63530 * 16 15 13 18 18 C 1.52758 * 109.38502 * 61.23838 * 17 16 15 19 19 N 1.46924 * 109.00987 * 305.59025 * 18 17 16 20 20 C 1.34781 * 120.63071 * 233.58269 * 19 18 17 21 21 O 1.21584 * 120.00076 * 173.23913 * 20 19 18 22 22 C 1.47540 * 119.99622 * 353.51623 * 20 19 18 23 23 C 1.40350 * 120.47736 * 140.29690 * 22 20 19 24 24 C 1.36854 * 118.49627 * 179.74581 * 23 22 20 25 25 C 1.39407 * 119.37540 * 0.52934 * 24 23 22 26 26 N 1.38453 * 119.53430 * 179.71940 * 25 24 23 27 27 C 1.46498 * 120.00446 * 5.00906 * 26 25 24 28 28 C 1.46501 * 119.99416 * 185.01674 * 26 25 24 29 29 N 1.32596 * 120.92132 * 359.72834 * 25 24 23 30 30 C 1.31673 * 121.64116 * 359.97438 * 29 25 24 31 31 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47216 * 300.00472 * 1 2 3 33 33 H 1.09007 * 109.47019 * 60.00574 * 1 2 3 34 34 H 0.97001 * 120.00307 * 106.53599 * 4 2 1 35 35 H 0.96996 * 120.00375 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.49800 * 294.36953 * 15 13 2 37 37 H 1.09001 * 109.49968 * 54.46862 * 15 13 2 38 38 H 1.08991 * 109.46076 * 58.65294 * 16 15 13 39 39 H 1.08994 * 109.45740 * 178.63009 * 16 15 13 40 40 H 1.09000 * 109.49685 * 181.31956 * 17 16 15 41 41 H 1.09003 * 109.49698 * 301.41066 * 17 16 15 42 42 H 1.08995 * 109.51036 * 185.70054 * 18 17 16 43 43 H 1.09001 * 109.42885 * 65.42338 * 18 17 16 44 44 H 1.07999 * 120.74762 * 359.97438 * 23 22 20 45 45 H 1.07993 * 120.31186 * 180.23674 * 24 23 22 46 46 H 1.09010 * 109.46549 * 90.00797 * 27 26 25 47 47 H 1.08998 * 109.47163 * 209.99960 * 27 26 25 48 48 H 1.08997 * 109.47452 * 330.00791 * 27 26 25 49 49 H 1.09007 * 109.47390 * 89.99967 * 28 26 25 50 50 H 1.09003 * 109.47354 * 209.99133 * 28 26 25 51 51 H 1.08991 * 109.47390 * 329.99596 * 28 26 25 52 52 H 1.08003 * 119.74428 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.9283 -0.0849 2.4211 6 1 1.4970 0.9017 2.5054 7 6 2.3914 -0.7389 3.5545 8 7 2.9174 -1.9411 3.4519 9 14 2.2679 0.0870 5.2255 10 1 1.6431 1.4252 5.0712 11 1 1.4361 -0.7471 6.1297 12 1 3.6272 0.2396 5.8038 13 6 2.0401 -0.7213 -1.2491 14 1 1.8235 -1.7868 -1.1724 15 6 1.3526 -0.1458 -2.4912 16 6 1.9663 -0.7723 -3.7455 17 6 3.4556 -0.4266 -3.8138 18 6 4.1660 -1.0003 -2.5892 19 7 3.4901 -0.5213 -1.3758 20 6 4.1862 0.0949 -0.3999 21 8 3.6010 0.5954 0.5411 22 6 5.6578 0.1675 -0.4765 23 6 6.3339 1.3356 -0.0918 24 6 7.6998 1.3567 -0.1744 25 6 8.3739 0.2308 -0.6449 26 7 9.7553 0.2507 -0.7353 27 6 10.5057 1.4057 -0.2361 28 6 10.4667 -0.8834 -1.3303 29 7 7.7105 -0.8586 -1.0071 30 6 6.3972 -0.9227 -0.9378 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.4053 -1.5768 1.1207 35 1 3.2414 -2.3980 4.2438 36 1 0.2871 -0.3728 -2.4553 37 1 1.4942 0.9347 -2.5177 38 1 1.8462 -1.8548 -3.7065 39 1 1.4622 -0.3825 -4.6298 40 1 3.8869 -0.8533 -4.7194 41 1 3.5774 0.6565 -3.8279 42 1 5.2049 -0.6705 -2.5833 43 1 4.1264 -2.0890 -2.6240 44 1 5.7888 2.1970 0.2649 45 1 8.2499 2.2389 0.1177 46 1 10.7587 1.2489 0.8125 47 1 11.4205 1.5232 -0.8170 48 1 9.8961 2.3041 -0.3324 49 1 10.5763 -0.7215 -2.4027 50 1 11.4525 -0.9739 -0.8740 51 1 9.9008 -1.7987 -1.1570 52 1 5.8880 -1.8255 -1.2413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713001207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:42 Heat of formation + Delta-G solvation = 77.448036 kcal Electronic energy + Delta-G solvation = -32432.384640 eV Core-core repulsion = 28434.614921 eV Total energy + Delta-G solvation = -3997.769719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.66612 -39.59296 -36.98721 -36.41255 -35.05924 -32.67518 -32.39610 -32.12794 -30.30339 -29.77343 -28.39231 -27.72310 -26.07122 -24.61278 -24.21965 -23.22167 -22.54830 -21.89230 -20.55274 -19.90840 -19.09056 -17.48958 -17.04235 -16.60679 -16.27088 -15.49372 -15.33587 -14.85347 -14.75904 -14.60767 -14.34928 -14.19221 -13.95953 -13.55908 -13.32870 -13.23878 -13.07043 -12.89390 -12.79211 -12.72348 -12.44199 -12.26205 -12.15827 -12.06352 -11.92622 -11.84837 -11.24803 -11.10030 -10.86181 -10.77880 -10.63790 -10.55022 -10.32476 -10.07920 -9.88476 -9.65982 -9.61575 -9.41200 -9.35621 -8.62192 -8.17338 -7.91456 -7.50157 -6.45025 -5.44192 -2.64738 1.24871 1.52805 2.82912 3.50198 3.52996 3.60856 3.65741 3.67850 4.15973 4.48625 4.82034 4.83464 4.87131 4.93124 4.97969 5.00283 5.08094 5.16982 5.22853 5.24678 5.29419 5.34565 5.45665 5.48308 5.49830 5.58476 5.69163 5.74893 5.84176 5.85012 5.88342 5.93614 5.97354 6.04103 6.11287 6.16102 6.18652 6.22597 6.37782 6.45620 6.52601 6.56737 6.60476 6.82106 6.87178 7.03420 7.14100 7.29031 7.48801 8.00874 8.07906 8.16578 8.73329 9.09877 9.84927 10.42660 10.77725 11.80392 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.004501 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.606299 B = 6219.010905 C = 8813.903823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.066 0.934 4 N -0.696 5.696 5 C -0.181 4.181 6 H 0.064 0.936 7 C -0.027 4.027 8 N -0.944 5.944 9 Si 0.896 3.104 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.298 1.298 13 C 0.149 3.851 14 H 0.065 0.935 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.133 4.133 18 C 0.104 3.896 19 N -0.612 5.612 20 C 0.533 3.467 21 O -0.435 6.435 22 C -0.218 4.218 23 C 0.013 3.987 24 C -0.245 4.245 25 C 0.406 3.594 26 N -0.617 5.617 27 C 0.094 3.906 28 C 0.099 3.901 29 N -0.546 5.546 30 C 0.176 3.824 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.138 0.862 45 H 0.133 0.867 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.060 0.940 51 H 0.081 0.919 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 4.511 -18.082 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.069 3.931 3 H 0.083 0.917 4 N -0.336 5.336 5 C -0.313 4.313 6 H 0.082 0.918 7 C -0.220 4.220 8 N -0.596 5.596 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.226 1.226 13 C 0.046 3.954 14 H 0.083 0.917 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.020 4.020 19 N -0.350 5.350 20 C 0.318 3.682 21 O -0.303 6.303 22 C -0.226 4.226 23 C -0.013 4.013 24 C -0.269 4.269 25 C 0.172 3.828 26 N -0.331 5.331 27 C -0.049 4.049 28 C -0.044 4.044 29 N -0.263 5.263 30 C 0.018 3.982 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.156 0.844 45 H 0.151 0.849 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.100 0.900 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.399 4.246 -17.671 21.453 hybrid contribution -0.162 0.639 1.297 1.455 sum 11.237 4.885 -16.373 20.450 Atomic orbital electron populations 1.22594 0.99981 1.00566 0.99884 1.20508 0.90288 0.97278 0.85002 0.91678 1.42297 1.71648 1.17909 1.01722 1.19068 1.29628 0.98478 0.84175 0.91844 1.24545 1.03188 0.97083 0.97185 1.69649 1.48875 1.13619 1.27440 0.86220 0.76796 0.78289 0.85702 1.20960 1.22578 1.22570 1.21482 0.78712 0.99535 0.95671 0.91694 1.22014 0.99913 1.00711 0.94040 1.21519 0.95319 1.00833 0.97924 1.21838 0.96197 1.01461 0.97655 1.21776 0.97010 0.98549 0.84639 1.47721 1.07795 1.60956 1.18506 1.17941 0.85782 0.81716 0.82793 1.91185 1.67849 1.41057 1.30244 1.20845 0.95706 0.97042 1.09049 1.21064 0.93067 0.96996 0.90136 1.21069 0.94997 0.99449 1.11408 1.18394 0.84804 0.89436 0.90150 1.46054 1.01904 1.20133 1.65023 1.21720 0.96067 0.88090 0.99039 1.21556 0.96199 0.89716 0.96929 1.67177 1.09785 1.25409 1.23970 1.22743 0.87855 0.97061 0.90585 0.93804 0.92758 0.94462 0.79011 0.94341 0.90652 0.91683 0.91936 0.92208 0.91358 0.91776 0.89800 0.91954 0.84431 0.84937 0.92886 0.91156 0.90913 0.93600 0.92081 0.90028 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.73 37.16 0.32 -2.88 16 2 C 0.18 3.73 1.80 -67.93 -0.12 3.60 16 3 H 0.07 1.50 6.25 -51.93 -0.32 1.18 16 4 N -0.70 -18.12 3.23 -53.43 -0.17 -18.29 16 5 C -0.18 -5.31 8.31 -15.06 -0.13 -5.44 16 6 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.03 -0.81 5.50 -17.43 -0.10 -0.91 16 8 N -0.94 -30.24 13.06 55.49 0.72 -29.52 16 9 Si 0.90 24.21 29.55 -169.99 -5.02 19.19 16 10 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 12 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 13 C 0.15 2.51 2.58 -67.60 -0.17 2.33 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.13 -1.67 4.53 -26.61 -0.12 -1.79 16 16 C -0.12 -1.25 5.89 -26.69 -0.16 -1.41 16 17 C -0.13 -1.38 6.06 -26.83 -0.16 -1.55 16 18 C 0.10 1.28 4.84 -3.94 -0.02 1.26 16 19 N -0.61 -9.98 2.98 -166.71 -0.50 -10.48 16 20 C 0.53 10.39 7.03 -12.47 -0.09 10.30 16 21 O -0.44 -10.48 9.99 5.29 0.05 -10.43 16 22 C -0.22 -3.76 5.15 -104.82 -0.54 -4.30 16 23 C 0.01 0.21 9.73 -39.29 -0.38 -0.17 16 24 C -0.24 -3.36 9.20 -39.65 -0.36 -3.72 16 25 C 0.41 5.74 7.36 -155.28 -1.14 4.60 16 26 N -0.62 -6.91 3.37 -189.70 -0.64 -7.55 16 27 C 0.09 0.73 10.27 59.85 0.61 1.34 16 28 C 0.10 0.92 10.49 59.85 0.63 1.55 16 29 N -0.55 -8.36 9.04 -12.14 -0.11 -8.47 16 30 C 0.18 2.76 8.57 -17.12 -0.15 2.61 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.12 7.99 -51.93 -0.41 0.71 16 33 H 0.04 0.58 6.45 -51.93 -0.33 0.24 16 34 H 0.38 10.62 7.71 -40.82 -0.31 10.30 16 35 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.93 6.69 -51.93 -0.35 0.58 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.02 4.76 -51.93 -0.25 0.77 16 43 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.13 1.44 5.99 -52.49 -0.31 1.13 16 46 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 48 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 49 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 50 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 51 H 0.08 0.89 7.28 -51.93 -0.38 0.51 16 52 H 0.16 2.28 6.53 -52.48 -0.34 1.94 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -35.74 395.89 -10.13 -45.87 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.36 Total: 8.27 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.07 Total: 5.44 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -0.69 Total: -74.31 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.05 Total: -10.43 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.74 -10.13 -45.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713001207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.319 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds