Wall clock time and date at job start Wed Apr 1 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 N 1.46498 * 109.46695 * 119.99565 * 2 1 3 5 5 C 1.36941 * 120.00009 * 286.53291 * 4 2 1 6 6 H 1.08001 * 120.00273 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00091 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00115 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47257 * 120.00238 * 9 7 5 12 12 H 1.48501 * 109.46912 * 240.00152 * 9 7 5 13 13 C 1.52995 * 109.47334 * 239.99414 * 2 1 3 14 14 H 1.08998 * 109.70646 * 290.51546 * 13 2 1 15 15 C 1.53192 * 109.58625 * 50.87111 * 13 2 1 16 16 C 1.53043 * 109.31278 * 174.42176 * 15 13 2 17 17 C 1.53046 * 109.53563 * 298.63530 * 16 15 13 18 18 C 1.52758 * 109.38502 * 61.23838 * 17 16 15 19 19 N 1.46924 * 109.00987 * 305.59025 * 18 17 16 20 20 C 1.34781 * 120.63071 * 233.58269 * 19 18 17 21 21 O 1.21584 * 120.00076 * 173.23913 * 20 19 18 22 22 C 1.47540 * 119.99622 * 353.51623 * 20 19 18 23 23 C 1.40350 * 120.47736 * 140.29690 * 22 20 19 24 24 C 1.36854 * 118.49627 * 179.74581 * 23 22 20 25 25 C 1.39407 * 119.37540 * 0.52934 * 24 23 22 26 26 N 1.38453 * 119.53430 * 179.71940 * 25 24 23 27 27 C 1.46498 * 120.00446 * 5.00906 * 26 25 24 28 28 C 1.46501 * 119.99416 * 185.01674 * 26 25 24 29 29 N 1.32596 * 120.92132 * 359.72834 * 25 24 23 30 30 C 1.31673 * 121.64116 * 359.97438 * 29 25 24 31 31 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47216 * 300.00472 * 1 2 3 33 33 H 1.09007 * 109.47019 * 60.00574 * 1 2 3 34 34 H 0.97001 * 120.00307 * 106.53599 * 4 2 1 35 35 H 0.96996 * 120.00375 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.49800 * 294.36953 * 15 13 2 37 37 H 1.09001 * 109.49968 * 54.46862 * 15 13 2 38 38 H 1.08991 * 109.46076 * 58.65294 * 16 15 13 39 39 H 1.08994 * 109.45740 * 178.63009 * 16 15 13 40 40 H 1.09000 * 109.49685 * 181.31956 * 17 16 15 41 41 H 1.09003 * 109.49698 * 301.41066 * 17 16 15 42 42 H 1.08995 * 109.51036 * 185.70054 * 18 17 16 43 43 H 1.09001 * 109.42885 * 65.42338 * 18 17 16 44 44 H 1.07999 * 120.74762 * 359.97438 * 23 22 20 45 45 H 1.07993 * 120.31186 * 180.23674 * 24 23 22 46 46 H 1.09010 * 109.46549 * 90.00797 * 27 26 25 47 47 H 1.08998 * 109.47163 * 209.99960 * 27 26 25 48 48 H 1.08997 * 109.47452 * 330.00791 * 27 26 25 49 49 H 1.09007 * 109.47390 * 89.99967 * 28 26 25 50 50 H 1.09003 * 109.47354 * 209.99133 * 28 26 25 51 51 H 1.08991 * 109.47390 * 329.99596 * 28 26 25 52 52 H 1.08003 * 119.74428 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.9283 -0.0849 2.4211 6 1 1.4970 0.9017 2.5054 7 6 2.3914 -0.7389 3.5545 8 7 2.9174 -1.9411 3.4519 9 14 2.2679 0.0870 5.2255 10 1 1.6431 1.4252 5.0712 11 1 1.4361 -0.7471 6.1297 12 1 3.6272 0.2396 5.8038 13 6 2.0401 -0.7213 -1.2491 14 1 1.8235 -1.7868 -1.1724 15 6 1.3526 -0.1458 -2.4912 16 6 1.9663 -0.7723 -3.7455 17 6 3.4556 -0.4266 -3.8138 18 6 4.1660 -1.0003 -2.5892 19 7 3.4901 -0.5213 -1.3758 20 6 4.1862 0.0949 -0.3999 21 8 3.6010 0.5954 0.5411 22 6 5.6578 0.1675 -0.4765 23 6 6.3339 1.3356 -0.0918 24 6 7.6998 1.3567 -0.1744 25 6 8.3739 0.2308 -0.6449 26 7 9.7553 0.2507 -0.7353 27 6 10.5057 1.4057 -0.2361 28 6 10.4667 -0.8834 -1.3303 29 7 7.7105 -0.8586 -1.0071 30 6 6.3972 -0.9227 -0.9378 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.4053 -1.5768 1.1207 35 1 3.2414 -2.3980 4.2438 36 1 0.2871 -0.3728 -2.4553 37 1 1.4942 0.9347 -2.5177 38 1 1.8462 -1.8548 -3.7065 39 1 1.4622 -0.3825 -4.6298 40 1 3.8869 -0.8533 -4.7194 41 1 3.5774 0.6565 -3.8279 42 1 5.2049 -0.6705 -2.5833 43 1 4.1264 -2.0890 -2.6240 44 1 5.7888 2.1970 0.2649 45 1 8.2499 2.2389 0.1177 46 1 10.7587 1.2489 0.8125 47 1 11.4205 1.5232 -0.8170 48 1 9.8961 2.3041 -0.3324 49 1 10.5763 -0.7215 -2.4027 50 1 11.4525 -0.9739 -0.8740 51 1 9.9008 -1.7987 -1.1570 52 1 5.8880 -1.8255 -1.2413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713001207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:40 Heat of formation + Delta-G solvation = 54.819983 kcal Electronic energy + Delta-G solvation = -32433.365866 eV Core-core repulsion = 28434.614921 eV Total energy + Delta-G solvation = -3998.750945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.91749 -40.81887 -38.19971 -37.56157 -36.69211 -34.24827 -33.70275 -33.53047 -31.64268 -31.24815 -29.37317 -29.10946 -27.20262 -26.08428 -25.66194 -24.47048 -23.95315 -22.98102 -21.74392 -21.36195 -20.44005 -18.97101 -18.38983 -18.06021 -17.46773 -16.77805 -16.64497 -16.31433 -15.84876 -15.81921 -15.61812 -15.43202 -15.27318 -15.05382 -14.78280 -14.44222 -14.33299 -14.13200 -14.09241 -13.74857 -13.58836 -13.49213 -13.39209 -13.27348 -13.01293 -12.97053 -12.83030 -12.73411 -12.51417 -12.34451 -12.08633 -11.92684 -11.68027 -11.59197 -11.36772 -11.19405 -11.03742 -10.83227 -10.69010 -10.56956 -9.69571 -9.36606 -8.57962 -8.49121 -7.76188 -4.93795 0.04920 0.34185 1.42332 1.44281 1.53075 1.95343 2.16028 2.23195 2.66066 2.92032 3.43803 3.57870 3.69952 3.86567 3.88963 3.96539 4.02452 4.10639 4.13982 4.19901 4.34622 4.35074 4.41076 4.44661 4.46728 4.52528 4.64285 4.68712 4.76958 4.79894 4.81402 4.87471 4.92763 4.96140 4.97923 4.99464 5.08977 5.11938 5.13584 5.22231 5.27816 5.30351 5.45134 5.47605 5.52157 5.61339 5.66050 5.95162 5.99784 6.28540 6.45751 6.72764 7.03322 7.50920 7.66453 8.31074 8.53478 9.49431 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.004501 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.606299 B = 6219.010905 C = 8813.903823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.042 0.958 4 N -0.700 5.700 5 C -0.164 4.164 6 H 0.055 0.945 7 C -0.092 4.092 8 N -0.980 5.980 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.296 1.296 12 H -0.305 1.305 13 C 0.152 3.848 14 H 0.059 0.941 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.099 3.901 19 N -0.609 5.609 20 C 0.532 3.468 21 O -0.500 6.500 22 C -0.247 4.247 23 C 0.001 3.999 24 C -0.240 4.240 25 C 0.401 3.599 26 N -0.614 5.614 27 C 0.085 3.915 28 C 0.095 3.905 29 N -0.557 5.557 30 C 0.181 3.819 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.362 0.638 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.162 0.838 46 H 0.057 0.943 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.087 0.913 51 H 0.062 0.938 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.377 5.049 -20.726 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.060 0.940 4 N -0.338 5.338 5 C -0.297 4.297 6 H 0.073 0.927 7 C -0.282 4.282 8 N -0.635 5.635 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.224 1.224 12 H -0.233 1.233 13 C 0.048 3.952 14 H 0.077 0.923 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.165 4.165 18 C -0.023 4.023 19 N -0.344 5.344 20 C 0.318 3.682 21 O -0.373 6.373 22 C -0.256 4.256 23 C -0.025 4.025 24 C -0.264 4.264 25 C 0.165 3.835 26 N -0.327 5.327 27 C -0.057 4.057 28 C -0.047 4.047 29 N -0.275 5.275 30 C 0.023 3.977 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.193 0.807 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.179 0.821 46 H 0.075 0.925 47 H 0.117 0.883 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.106 0.894 51 H 0.081 0.919 52 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.723 4.813 -20.403 24.522 hybrid contribution -0.394 0.533 1.972 2.080 sum 12.329 5.346 -18.431 22.810 Atomic orbital electron populations 1.22438 0.98154 1.00764 1.00573 1.20595 0.91303 0.96121 0.85105 0.94036 1.42375 1.71694 1.17310 1.02454 1.19253 1.27195 0.97641 0.85635 0.92675 1.25184 1.04645 0.98037 1.00332 1.69802 1.51100 1.15037 1.27578 0.85282 0.76214 0.77854 0.81976 1.19818 1.22407 1.23333 1.21407 0.79449 0.98746 0.95588 0.92309 1.21962 1.00350 1.00305 0.93266 1.21512 0.95211 1.01164 0.97175 1.21819 0.96106 1.01115 0.97454 1.22040 0.97161 0.99359 0.83781 1.47827 1.07735 1.59780 1.19092 1.18396 0.86845 0.80568 0.82361 1.91138 1.69180 1.44323 1.32617 1.20755 0.94560 0.98503 1.11787 1.21144 0.94175 0.96629 0.90552 1.21300 0.94135 1.00466 1.10535 1.18741 0.86292 0.89107 0.89352 1.46452 1.00903 1.21452 1.63861 1.22002 0.96910 0.87026 0.99725 1.21693 0.96829 0.88326 0.97893 1.67248 1.09366 1.26081 1.24819 1.22777 0.88159 0.96710 0.90102 0.93751 0.95217 0.90571 0.80661 0.95189 0.89417 0.92212 0.91200 0.89733 0.88401 0.92408 0.89645 0.90667 0.85073 0.82067 0.92468 0.88301 0.90215 0.92376 0.89425 0.91926 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.01 8.73 71.98 0.63 -5.38 16 2 C 0.18 7.59 1.80 44.99 0.08 7.67 16 3 H 0.04 2.02 6.25 -2.39 -0.01 2.00 16 4 N -0.70 -38.12 3.23 -322.94 -1.04 -39.16 16 5 C -0.16 -10.00 8.31 84.03 0.70 -9.30 16 6 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 7 C -0.09 -5.84 5.50 84.86 0.47 -5.37 16 8 N -0.98 -65.29 13.06 21.65 0.28 -65.00 16 9 Si 0.95 51.56 29.55 68.60 2.03 53.59 16 10 H -0.27 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 12 H -0.30 -16.67 7.11 99.48 0.71 -15.97 16 13 C 0.15 5.08 2.58 44.97 0.12 5.19 16 14 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.12 -2.90 4.53 30.67 0.14 -2.76 16 16 C -0.11 -2.01 5.89 30.62 0.18 -1.83 16 17 C -0.13 -2.28 6.06 30.53 0.19 -2.09 16 18 C 0.10 2.32 4.84 86.22 0.42 2.73 16 19 N -0.61 -20.09 2.98 -799.60 -2.38 -22.47 16 20 C 0.53 21.71 7.03 86.70 0.61 22.32 16 21 O -0.50 -25.52 9.99 -3.98 -0.04 -25.56 16 22 C -0.25 -8.84 5.15 -19.99 -0.10 -8.95 16 23 C 0.00 0.03 9.73 22.46 0.22 0.25 16 24 C -0.24 -6.40 9.20 22.23 0.20 -6.20 16 25 C 0.40 10.86 7.36 133.26 0.98 11.84 16 26 N -0.61 -12.29 3.37 -754.08 -2.54 -14.84 16 27 C 0.09 1.05 10.27 127.77 1.31 2.36 16 28 C 0.10 1.54 10.49 127.77 1.34 2.88 16 29 N -0.56 -16.78 9.04 -192.32 -1.74 -18.52 16 30 C 0.18 5.75 8.57 85.04 0.73 6.48 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.23 7.99 -2.39 -0.02 1.21 16 33 H 0.08 2.25 6.45 -2.38 -0.02 2.23 16 34 H 0.36 21.43 7.71 -92.71 -0.71 20.71 16 35 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.09 1.91 6.69 -2.39 -0.02 1.89 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 2.02 4.76 -2.39 -0.01 2.00 16 43 H 0.08 1.59 8.10 -2.39 -0.02 1.58 16 44 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.16 3.21 5.99 -2.91 -0.02 3.19 16 46 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 48 H 0.08 0.89 5.95 -2.39 -0.01 0.87 16 49 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 50 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 51 H 0.06 1.28 7.28 -2.39 -0.02 1.26 16 52 H 0.17 4.82 6.53 -2.91 -0.02 4.80 16 Total: -1.00 -82.25 395.89 2.98 -79.27 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.21 Total: 32.84 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 8.20 Total: 19.86 kcal Atomic # 7 Polarization: -152.57 SS G_CDS: -7.42 Total: -159.99 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.03 Total: 53.59 kcal Total: -82.25 2.98 -79.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713001207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.088 kcal (2) G-P(sol) polarization free energy of solvation -82.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds