Wall clock time and date at job start Wed Apr 1 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46963 * 2 1 4 4 C 1.53001 * 109.46936 * 240.00295 * 2 1 3 5 5 C 1.50698 * 109.47272 * 65.00017 * 4 2 1 6 6 O 1.21279 * 120.00022 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00216 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00336 * 179.97438 * 7 5 4 9 9 C 1.53150 * 109.43456 * 119.92593 * 8 7 5 10 10 C 1.54244 * 108.84515 * 66.08771 * 9 8 7 11 11 H 1.08998 * 112.33477 * 187.68866 * 10 9 8 12 12 C 1.54613 * 107.85807 * 312.47601 * 10 9 8 13 13 C 1.53800 * 104.85031 * 88.46517 * 12 10 9 14 14 C 1.54608 * 104.84943 * 0.02562 * 13 12 10 15 15 H 1.08994 * 112.69609 * 146.96362 * 14 13 12 16 16 C 1.53139 * 109.43850 * 240.15284 * 8 7 5 17 17 N 1.48296 * 106.99026 * 64.13086 * 10 9 8 18 18 C 1.36938 * 128.21335 * 107.53388 * 17 10 9 19 19 H 1.07998 * 119.99988 * 164.58800 * 18 17 10 20 20 C 1.38816 * 119.99356 * 344.58830 * 18 17 10 21 21 N 1.31614 * 120.00501 * 351.61008 * 20 18 17 22 22 Si 1.86803 * 119.99702 * 171.61888 * 20 18 17 23 23 H 1.48500 * 109.46779 * 269.99774 * 22 20 18 24 24 H 1.48497 * 109.47098 * 29.99202 * 22 20 18 25 25 H 1.48492 * 109.47357 * 149.99756 * 22 20 18 26 26 C 1.50695 * 109.47204 * 120.00337 * 2 1 3 27 27 C 1.39879 * 126.04098 * 60.02122 * 26 2 1 28 28 N 1.30835 * 108.20397 * 179.97438 * 27 26 2 29 29 N 1.40088 * 108.20242 * 359.97438 * 28 27 26 30 30 C 1.46507 * 126.03499 * 179.97438 * 29 28 27 31 31 C 1.34942 * 107.92790 * 359.76076 * 29 28 27 32 32 H 1.09001 * 109.47130 * 59.99721 * 1 2 3 33 33 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46941 * 299.99937 * 1 2 3 35 35 H 1.09003 * 109.47183 * 304.99819 * 4 2 1 36 36 H 1.09000 * 109.46951 * 185.00401 * 4 2 1 37 37 H 0.97002 * 119.99891 * 359.97438 * 7 5 4 38 38 H 1.09008 * 109.39736 * 0.04516 * 8 7 5 39 39 H 1.09001 * 109.56826 * 185.99404 * 9 8 7 40 40 H 1.09003 * 109.57001 * 306.35920 * 9 8 7 41 41 H 1.08995 * 110.38576 * 207.17391 * 12 10 9 42 42 H 1.09007 * 110.37793 * 329.42656 * 12 10 9 43 43 H 1.08999 * 110.43196 * 241.10268 * 13 12 10 44 44 H 1.09002 * 110.23089 * 118.80378 * 13 12 10 45 45 H 1.09004 * 109.57360 * 174.00509 * 16 8 7 46 46 H 1.08995 * 109.66926 * 53.69770 * 16 8 7 47 47 H 0.96992 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.08002 * 125.89438 * 359.96239 * 27 26 2 49 49 H 1.08998 * 109.46835 * 90.02111 * 30 29 28 50 50 H 1.08994 * 109.47236 * 210.02565 * 30 29 28 51 51 H 1.09000 * 109.46827 * 330.02637 * 30 29 28 52 52 H 1.08006 * 126.12692 * 180.23729 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0118 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 1.5973 0.3651 -4.8933 9 6 2.8539 0.7846 -5.6617 10 6 3.5493 -0.4794 -6.2075 11 1 4.5209 -0.2593 -6.6497 12 6 3.6371 -1.5070 -5.0557 13 6 2.3210 -2.2991 -5.1329 14 6 1.5553 -1.6800 -6.3248 15 1 0.9480 -2.4103 -6.8595 16 6 0.7142 -0.5106 -5.7869 17 7 2.6183 -1.1002 -7.1807 18 6 2.7194 -1.1353 -8.5459 19 1 2.1131 -1.8247 -9.1147 20 6 3.6013 -0.2849 -9.1985 21 7 4.2172 0.6655 -8.5278 22 14 3.9138 -0.4892 -11.0289 23 1 5.0502 -1.4224 -11.2358 24 1 2.6976 -1.0382 -11.6804 25 1 4.2421 0.8305 -11.6253 26 6 2.0324 -0.7105 1.2304 27 6 1.7739 -2.0411 1.5756 28 7 2.3783 -2.2944 2.7079 29 7 3.0420 -1.1314 3.1195 30 6 3.8415 -0.9807 4.3379 31 6 2.8189 -0.1759 2.1931 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6054 -1.7198 -1.2952 36 1 3.1263 -0.7995 -1.2056 37 1 2.4898 -1.2147 -3.7908 38 1 1.0418 1.2539 -4.5937 39 1 2.5749 1.4362 -6.4898 40 1 3.5323 1.3128 -4.9917 41 1 4.4871 -2.1728 -5.2048 42 1 3.7199 -0.9959 -4.0965 43 1 1.7506 -2.1799 -4.2117 44 1 2.5259 -3.3532 -5.3199 45 1 0.3374 0.0818 -6.6208 46 1 -0.1230 -0.8993 -5.2074 47 1 4.8331 1.2599 -8.9840 48 1 1.1781 -2.7388 1.0058 49 1 4.8788 -1.2399 4.1261 50 1 3.7881 0.0521 4.6820 51 1 3.4524 -1.6422 5.1119 52 1 3.1976 0.8353 2.2172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713179476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:19 Heat of formation + Delta-G solvation = 135.894741 kcal Electronic energy + Delta-G solvation = -31644.607816 eV Core-core repulsion = 27649.372536 eV Total energy + Delta-G solvation = -3995.235280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46008 -40.98119 -38.56493 -35.33075 -34.09975 -32.94439 -32.13876 -31.33225 -30.25272 -29.81747 -29.10588 -27.53033 -26.72663 -24.56505 -23.28492 -22.90933 -21.53922 -21.19879 -20.28927 -19.74398 -19.57296 -18.95408 -17.35356 -17.01090 -16.46067 -15.67145 -15.32878 -14.95634 -14.83608 -14.57111 -14.30673 -14.02500 -13.64841 -13.43457 -13.25478 -13.05229 -12.93282 -12.86266 -12.76220 -12.71443 -12.45019 -12.07230 -11.94672 -11.61992 -11.53034 -11.47670 -11.13976 -11.02476 -10.94737 -10.89842 -10.64598 -10.49783 -10.34354 -10.25927 -10.02449 -9.71749 -9.61769 -9.47131 -9.35342 -9.21808 -8.62575 -8.52272 -8.10380 -6.83358 -5.78929 -3.14295 1.69019 2.30648 2.62494 3.05377 3.37127 3.43282 3.44592 3.76631 4.26876 4.44525 4.62555 4.78986 4.84541 4.88166 5.04208 5.12064 5.15996 5.17902 5.33262 5.40571 5.46223 5.52145 5.58399 5.62841 5.65481 5.65991 5.70326 5.83572 5.88098 5.94707 6.02293 6.05116 6.13276 6.20468 6.33390 6.34146 6.41357 6.52980 6.54792 6.58476 6.62238 6.70887 6.78716 6.82212 6.91606 7.03668 7.18507 7.50011 7.52752 7.55396 7.73136 8.02336 8.21223 8.70152 9.11192 9.73235 10.51481 11.33308 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.002273 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.214520 B =12318.005213 C =12558.895190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.007 3.993 3 H 0.081 0.919 4 C -0.134 4.134 5 C 0.495 3.505 6 O -0.555 6.555 7 N -0.738 5.738 8 C 0.142 3.858 9 C -0.123 4.123 10 C 0.181 3.819 11 H 0.112 0.888 12 C -0.173 4.173 13 C -0.160 4.160 14 C 0.150 3.850 15 H 0.067 0.933 16 C -0.137 4.137 17 N -0.584 5.584 18 C -0.223 4.223 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.912 5.912 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.281 1.281 25 H -0.291 1.291 26 C -0.225 4.225 27 C 0.055 3.945 28 N -0.301 5.301 29 N -0.381 5.381 30 C 0.103 3.897 31 C 0.054 3.946 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.426 0.574 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.253 0.747 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -3.256 21.828 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 H 0.099 0.901 4 C -0.175 4.175 5 C 0.282 3.718 6 O -0.434 6.434 7 N -0.410 5.410 8 C 0.038 3.962 9 C -0.164 4.164 10 C 0.074 3.926 11 H 0.130 0.870 12 C -0.212 4.212 13 C -0.200 4.200 14 C 0.042 3.958 15 H 0.085 0.915 16 C -0.178 4.178 17 N -0.305 5.305 18 C -0.352 4.352 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.558 5.558 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.218 1.218 26 C -0.236 4.236 27 C -0.131 4.131 28 N -0.122 5.122 29 N -0.163 5.163 30 C -0.039 4.039 31 C -0.091 4.091 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.286 0.714 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.198 0.802 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.718 -3.345 22.685 22.994 hybrid contribution 0.326 0.250 -1.530 1.584 sum -1.393 -3.094 21.155 21.425 Atomic orbital electron populations 1.21920 0.94229 1.01366 1.02819 1.19102 0.95954 0.98135 0.88108 0.90061 1.21749 1.02681 1.00138 0.92891 1.20831 0.79473 0.85848 0.85677 1.90600 1.40795 1.24996 1.87039 1.49097 1.56871 1.29498 1.05574 1.21042 0.96822 0.94457 0.83841 1.22455 0.95075 1.00159 0.98664 1.21629 0.96505 0.88417 0.86052 0.86997 1.23321 0.96881 0.99986 1.01021 1.23171 0.97225 0.99759 0.99821 1.21539 0.90587 0.93266 0.90454 0.91465 1.22502 0.97204 0.99239 0.98827 1.45159 1.20536 1.63655 1.01112 1.18988 1.20902 1.15249 0.80032 0.90720 1.24838 1.00964 0.96523 0.97849 1.69840 1.32048 1.19257 1.34654 0.86152 0.78038 0.76851 0.84885 1.21690 1.20707 1.21771 1.20151 1.07488 0.95323 1.00661 1.23752 0.99129 0.96157 0.94058 1.77341 1.13533 1.05984 1.15337 1.48429 1.40390 1.08500 1.19000 1.21823 0.94607 1.03452 0.83982 1.22361 1.00223 0.95752 0.90785 0.90263 0.93452 0.93306 0.89330 0.89352 0.71444 0.90045 0.89857 0.93959 0.92342 0.90459 0.90256 0.92236 0.91012 0.93434 0.93659 0.80226 0.90838 0.89577 0.89444 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 2 C 0.01 0.08 2.40 -91.77 -0.22 -0.14 16 3 H 0.08 0.96 7.92 -51.93 -0.41 0.54 16 4 C -0.13 -1.49 5.03 -27.88 -0.14 -1.63 16 5 C 0.50 7.37 7.55 -10.99 -0.08 7.29 16 6 O -0.55 -9.97 13.29 5.56 0.07 -9.89 16 7 N -0.74 -11.37 2.78 -53.66 -0.15 -11.52 16 8 C 0.14 2.61 3.15 -67.78 -0.21 2.39 16 9 C -0.12 -2.57 5.44 -26.00 -0.14 -2.71 16 10 C 0.18 3.95 3.19 -65.44 -0.21 3.74 16 11 H 0.11 2.84 6.29 -51.93 -0.33 2.51 16 12 C -0.17 -2.98 5.73 -25.47 -0.15 -3.12 16 13 C -0.16 -2.57 5.73 -25.47 -0.15 -2.71 16 14 C 0.15 2.88 4.33 -65.71 -0.28 2.60 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 16 C -0.14 -2.52 5.49 -26.26 -0.14 -2.66 16 17 N -0.58 -13.68 2.81 -152.42 -0.43 -14.11 16 18 C -0.22 -5.87 10.38 -15.06 -0.16 -6.02 16 19 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 20 C 0.00 -0.13 5.43 -17.43 -0.09 -0.22 16 21 N -0.91 -25.13 10.62 55.49 0.59 -24.55 16 22 Si 0.91 21.35 29.56 -169.99 -5.03 16.32 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.22 -2.29 4.80 -105.05 -0.50 -2.79 16 27 C 0.06 0.58 11.54 -17.36 -0.20 0.38 16 28 N -0.30 -3.49 12.58 30.63 0.39 -3.10 16 29 N -0.38 -3.57 4.01 -68.16 -0.27 -3.84 16 30 C 0.10 0.52 11.47 59.85 0.69 1.21 16 31 C 0.05 0.49 11.38 -17.23 -0.20 0.30 16 32 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 33 H 0.05 0.48 8.02 -51.93 -0.42 0.06 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.43 6.06 1.90 -65.56 -0.12 5.94 16 38 H 0.08 1.60 6.89 -51.92 -0.36 1.24 16 39 H 0.08 2.01 8.05 -51.93 -0.42 1.59 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.20 5.28 -51.92 -0.27 0.92 16 43 H 0.08 1.11 5.26 -51.93 -0.27 0.84 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 51 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -31.54 394.39 -9.13 -40.66 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.38 Total: 9.51 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.86 Total: -5.43 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.12 Total: -57.12 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.54 -9.13 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713179476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.559 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds