Wall clock time and date at job start Wed Apr 1 2020 03:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 N 1.46493 * 109.47247 * 119.99797 * 2 1 3 5 5 C 1.36938 * 120.00456 * 274.99879 * 4 2 1 6 6 H 1.08005 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00477 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99567 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00355 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99861 * 9 7 5 11 11 H 1.48499 * 109.47182 * 210.00270 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99842 * 9 7 5 13 13 C 1.52997 * 109.47131 * 240.00309 * 2 1 3 14 14 C 1.53043 * 109.46181 * 59.99654 * 13 2 1 15 15 C 1.53191 * 109.31228 * 181.39053 * 14 13 2 16 16 N 1.46927 * 108.89269 * 305.29132 * 15 14 13 17 17 C 1.34773 * 120.63194 * 233.68096 * 16 15 14 18 18 O 1.21572 * 119.99833 * 354.07591 * 17 16 15 19 19 C 1.47711 * 120.00121 * 174.08202 * 17 16 15 20 20 C 1.41638 * 126.49709 * 173.32833 * 19 17 16 21 21 C 1.34705 * 105.33656 * 179.97438 * 20 19 17 22 22 N 1.35500 * 107.71056 * 0.03458 * 21 20 19 23 23 N 1.28430 * 109.72175 * 359.67417 * 22 21 20 24 24 C 1.47002 * 123.90198 * 179.97438 * 22 21 20 25 25 C 1.53147 * 108.88782 * 342.34262 * 24 22 21 26 26 C 1.53158 * 109.59537 * 51.12317 * 25 24 22 27 27 C 1.50792 * 127.53690 * 180.02562 * 21 20 19 28 28 C 1.47208 * 118.55240 * 53.54223 * 16 15 14 29 29 C 1.53037 * 109.46313 * 180.02562 * 13 2 1 30 30 H 1.08992 * 109.47582 * 59.99620 * 1 2 3 31 31 H 1.08994 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46935 * 299.99903 * 1 2 3 33 33 H 0.97001 * 119.99916 * 95.00083 * 4 2 1 34 34 H 0.97004 * 119.99721 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.44507 * 300.03046 * 13 2 1 36 36 H 1.09000 * 109.50012 * 61.43465 * 14 13 2 37 37 H 1.09003 * 109.49735 * 301.33672 * 14 13 2 38 38 H 1.09001 * 109.58923 * 65.15311 * 15 14 13 39 39 H 1.09002 * 109.58334 * 185.43761 * 15 14 13 40 40 H 1.07998 * 127.33728 * 0.02562 * 20 19 17 41 41 H 1.09001 * 109.56626 * 222.52605 * 24 22 21 42 42 H 1.08998 * 109.66622 * 102.22439 * 24 22 21 43 43 H 1.08994 * 109.45027 * 291.08787 * 25 24 22 44 44 H 1.08994 * 109.44838 * 171.15858 * 25 24 22 45 45 H 1.09003 * 109.53777 * 170.53789 * 26 25 24 46 46 H 1.08997 * 109.61762 * 50.32191 * 26 25 24 47 47 H 1.08998 * 109.71621 * 284.12764 * 27 21 20 48 48 H 1.09003 * 109.72141 * 44.77557 * 27 21 20 49 49 H 1.08999 * 109.53018 * 186.67322 * 28 16 15 50 50 H 1.08994 * 109.67666 * 66.36759 * 28 16 15 51 51 H 1.08995 * 109.49627 * 298.56481 * 29 13 2 52 52 H 1.09003 * 109.49448 * 58.62897 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6124 -0.6616 3.5090 8 7 2.9264 -1.9385 3.4496 9 14 2.7902 0.2700 5.1182 10 1 1.5226 0.1778 5.8863 11 1 3.8953 -0.3225 5.9137 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0005 -2.4987 15 6 2.0133 -0.7442 -3.7469 16 7 3.4753 -0.8770 -3.6851 17 6 4.2468 -0.4569 -4.7072 18 8 3.7318 -0.0625 -5.7353 19 6 5.7182 -0.4758 -4.5782 20 6 6.6571 -0.1942 -5.6005 21 6 7.8658 -0.3346 -5.0227 22 7 7.6660 -0.6813 -3.7281 23 7 6.4064 -0.7521 -3.4878 24 6 8.7518 -0.9254 -2.7677 25 6 10.0532 -1.1609 -3.5400 26 6 10.2646 -0.0272 -4.5479 27 6 9.2179 -0.1491 -5.6640 28 6 4.0772 -1.4754 -2.4823 29 6 3.5704 -0.7216 -1.2487 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2498 -2.3957 4.2416 35 1 1.6760 -1.7487 -1.2492 36 1 1.9135 1.0206 -2.5120 37 1 0.4399 0.0215 -2.4871 38 1 1.5577 -1.7338 -3.7816 39 1 1.7349 -0.1823 -4.6385 40 1 6.4486 0.0764 -6.6250 41 1 8.5184 -1.8058 -2.1688 42 1 8.8660 -0.0598 -2.1152 43 1 9.9937 -2.1114 -4.0701 44 1 10.8899 -1.1866 -2.8419 45 1 11.2642 -0.1020 -4.9762 46 1 10.1540 0.9340 -4.0460 47 1 9.4473 -1.0089 -6.2935 48 1 9.2176 0.7591 -6.2668 49 1 5.1627 -1.3947 -2.5394 50 1 3.7920 -2.5251 -2.4127 51 1 3.9344 0.3054 -1.2741 52 1 3.9337 -1.2142 -0.3468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713677257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:11 Heat of formation + Delta-G solvation = 52.280876 kcal Electronic energy + Delta-G solvation = -31259.031188 eV Core-core repulsion = 27260.170139 eV Total energy + Delta-G solvation = -3998.861049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.98295 -39.82951 -37.75952 -36.93207 -35.28672 -33.33236 -32.87486 -31.40553 -30.61042 -30.13078 -28.95571 -28.19912 -25.63301 -24.88549 -23.92727 -22.95788 -22.67249 -22.13829 -20.83022 -19.85451 -19.55158 -18.65165 -17.23494 -17.06133 -16.82730 -16.15686 -15.77405 -15.23318 -14.89064 -14.71197 -14.53395 -14.35854 -14.06594 -13.91037 -13.78992 -13.67104 -13.46781 -13.29428 -12.97786 -12.56555 -12.52514 -12.39894 -12.16661 -11.92073 -11.63424 -11.57708 -11.49139 -11.46389 -11.04111 -10.93826 -10.84904 -10.67835 -10.60319 -10.20627 -10.08558 -10.07438 -9.82202 -9.51726 -9.47071 -9.18631 -9.06845 -8.84837 -8.38949 -6.89249 -5.72696 -2.99841 1.51946 1.99610 2.19959 3.15999 3.44645 3.47066 3.50260 3.51271 3.91914 4.12738 4.20908 4.28014 4.52796 4.61952 4.76894 4.87145 4.92035 5.08320 5.16802 5.18672 5.21450 5.25011 5.29492 5.34447 5.42808 5.45948 5.52641 5.59435 5.60446 5.64358 5.72329 5.83620 5.84391 5.94398 6.06599 6.08273 6.18837 6.19689 6.30542 6.41549 6.45260 6.54306 6.58411 6.66072 6.78426 6.84595 6.95264 7.05201 7.21600 7.53180 7.74394 7.86412 8.30154 8.46587 9.57569 10.17109 10.52181 11.50146 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.002957 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.539717 B = 9467.889243 C =11742.754555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.091 4.091 14 C -0.127 4.127 15 C 0.113 3.887 16 N -0.594 5.594 17 C 0.603 3.397 18 O -0.545 6.545 19 C -0.009 4.009 20 C -0.178 4.178 21 C 0.013 3.987 22 N -0.283 5.283 23 N -0.251 5.251 24 C 0.117 3.883 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.051 4.051 28 C 0.074 3.926 29 C -0.115 4.115 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.132 0.868 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.479 0.978 -19.349 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.363 5.363 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.110 4.110 14 C -0.166 4.166 15 C -0.009 4.009 16 N -0.326 5.326 17 C 0.389 3.611 18 O -0.422 6.422 19 C -0.169 4.169 20 C -0.205 4.205 21 C -0.111 4.111 22 N -0.071 5.071 23 N -0.085 5.085 24 C -0.003 4.003 25 C -0.174 4.174 26 C -0.166 4.166 27 C -0.090 4.090 28 C -0.048 4.048 29 C -0.153 4.153 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.217 0.783 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.178 0.822 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.149 0.851 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.200 0.994 -18.516 23.355 hybrid contribution 0.082 0.300 0.478 0.570 sum 14.282 1.294 -18.038 23.044 Atomic orbital electron populations 1.22490 0.99600 1.00711 0.99787 1.20219 0.91506 0.95305 0.86166 0.93829 1.42411 1.78047 1.10623 1.05268 1.19234 1.35812 0.93782 0.87416 0.91407 1.24692 1.02550 0.95973 0.97889 1.69661 1.51372 1.08631 1.28671 0.86240 0.77232 0.78809 0.84241 1.21881 1.21897 1.20886 1.21403 0.95440 0.99729 0.94455 1.22013 1.01001 0.99616 0.93933 1.21656 0.78959 1.00821 0.99480 1.48052 1.06936 1.59747 1.17817 1.16984 0.83691 0.77322 0.83075 1.90747 1.73636 1.49073 1.28722 1.21948 0.94497 1.09133 0.91307 1.21254 0.89666 1.08716 1.00910 1.21268 0.97515 1.06266 0.86016 1.45989 1.04447 1.47921 1.08735 1.73198 0.90053 1.20201 1.25070 1.22197 0.83271 1.04396 0.90390 1.21936 0.95975 1.00214 0.99273 1.21711 0.99502 0.98977 0.96367 1.20356 0.87795 1.03595 0.97251 1.22817 1.02328 0.96183 0.83503 1.21792 0.95392 1.00838 0.97276 0.94281 0.93617 0.93124 0.78349 0.93681 0.91528 0.91758 0.90408 0.91578 0.89405 0.82187 0.87832 0.88662 0.90380 0.88639 0.90103 0.90968 0.89519 0.89094 0.85125 0.92163 0.92291 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.14 37.16 0.34 -2.71 16 2 C 0.18 3.54 2.47 -67.94 -0.17 3.37 16 3 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.81 4.41 -53.43 -0.24 -18.04 16 5 C -0.23 -6.38 9.93 -15.06 -0.15 -6.52 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 9 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.09 -1.52 1.79 -90.58 -0.16 -1.68 16 14 C -0.13 -1.83 5.04 -26.61 -0.13 -1.96 16 15 C 0.11 1.60 6.41 -3.71 -0.02 1.57 16 16 N -0.59 -9.14 2.98 -173.70 -0.52 -9.66 16 17 C 0.60 9.93 7.70 -12.39 -0.10 9.83 16 18 O -0.55 -10.05 16.37 5.30 0.09 -9.96 16 19 C -0.01 -0.14 6.88 -82.69 -0.57 -0.71 16 20 C -0.18 -2.20 10.76 -39.54 -0.43 -2.63 16 21 C 0.01 0.13 6.57 -82.18 -0.54 -0.41 16 22 N -0.28 -3.09 3.74 -56.71 -0.21 -3.30 16 23 N -0.25 -3.49 8.44 33.46 0.28 -3.20 16 24 C 0.12 0.84 7.17 -3.69 -0.03 0.82 16 25 C -0.14 -0.60 5.91 -26.57 -0.16 -0.76 16 26 C -0.13 -0.56 5.98 -26.39 -0.16 -0.72 16 27 C -0.05 -0.30 6.28 -27.58 -0.17 -0.47 16 28 C 0.07 1.13 6.34 -3.56 -0.02 1.11 16 29 C -0.11 -1.96 5.22 -26.61 -0.14 -2.10 16 30 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.38 10.01 7.58 -40.82 -0.31 9.70 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.02 6.36 -51.93 -0.33 0.69 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.26 7.04 -51.93 -0.37 0.89 16 40 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.36 8.11 -51.93 -0.42 -0.06 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.13 1.99 3.79 -104.62 -0.40 1.59 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.09 1.72 7.40 -51.93 -0.38 1.34 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -33.66 401.88 -10.38 -44.05 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.85 Total: 8.36 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.70 Total: -4.49 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.04 Total: -61.43 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.66 -10.38 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713677257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.326 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds