Wall clock time and date at job start Wed Apr 1 2020 03:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 N 1.46493 * 109.47247 * 119.99797 * 2 1 3 5 5 C 1.36938 * 120.00456 * 274.99879 * 4 2 1 6 6 H 1.08005 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00477 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99567 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00355 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99861 * 9 7 5 11 11 H 1.48499 * 109.47182 * 210.00270 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99842 * 9 7 5 13 13 C 1.52997 * 109.47131 * 240.00309 * 2 1 3 14 14 C 1.53043 * 109.46181 * 59.99654 * 13 2 1 15 15 C 1.53191 * 109.31228 * 181.39053 * 14 13 2 16 16 N 1.46927 * 108.89269 * 305.29132 * 15 14 13 17 17 C 1.34773 * 120.63194 * 233.68096 * 16 15 14 18 18 O 1.21572 * 119.99833 * 354.07591 * 17 16 15 19 19 C 1.47711 * 120.00121 * 174.08202 * 17 16 15 20 20 C 1.41638 * 126.49709 * 173.32833 * 19 17 16 21 21 C 1.34705 * 105.33656 * 179.97438 * 20 19 17 22 22 N 1.35500 * 107.71056 * 0.03458 * 21 20 19 23 23 N 1.28430 * 109.72175 * 359.67417 * 22 21 20 24 24 C 1.47002 * 123.90198 * 179.97438 * 22 21 20 25 25 C 1.53147 * 108.88782 * 342.34262 * 24 22 21 26 26 C 1.53158 * 109.59537 * 51.12317 * 25 24 22 27 27 C 1.50792 * 127.53690 * 180.02562 * 21 20 19 28 28 C 1.47208 * 118.55240 * 53.54223 * 16 15 14 29 29 C 1.53037 * 109.46313 * 180.02562 * 13 2 1 30 30 H 1.08992 * 109.47582 * 59.99620 * 1 2 3 31 31 H 1.08994 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46935 * 299.99903 * 1 2 3 33 33 H 0.97001 * 119.99916 * 95.00083 * 4 2 1 34 34 H 0.97004 * 119.99721 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.44507 * 300.03046 * 13 2 1 36 36 H 1.09000 * 109.50012 * 61.43465 * 14 13 2 37 37 H 1.09003 * 109.49735 * 301.33672 * 14 13 2 38 38 H 1.09001 * 109.58923 * 65.15311 * 15 14 13 39 39 H 1.09002 * 109.58334 * 185.43761 * 15 14 13 40 40 H 1.07998 * 127.33728 * 0.02562 * 20 19 17 41 41 H 1.09001 * 109.56626 * 222.52605 * 24 22 21 42 42 H 1.08998 * 109.66622 * 102.22439 * 24 22 21 43 43 H 1.08994 * 109.45027 * 291.08787 * 25 24 22 44 44 H 1.08994 * 109.44838 * 171.15858 * 25 24 22 45 45 H 1.09003 * 109.53777 * 170.53789 * 26 25 24 46 46 H 1.08997 * 109.61762 * 50.32191 * 26 25 24 47 47 H 1.08998 * 109.71621 * 284.12764 * 27 21 20 48 48 H 1.09003 * 109.72141 * 44.77557 * 27 21 20 49 49 H 1.08999 * 109.53018 * 186.67322 * 28 16 15 50 50 H 1.08994 * 109.67666 * 66.36759 * 28 16 15 51 51 H 1.08995 * 109.49627 * 298.56481 * 29 13 2 52 52 H 1.09003 * 109.49448 * 58.62897 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6124 -0.6616 3.5090 8 7 2.9264 -1.9385 3.4496 9 14 2.7902 0.2700 5.1182 10 1 1.5226 0.1778 5.8863 11 1 3.8953 -0.3225 5.9137 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0005 -2.4987 15 6 2.0133 -0.7442 -3.7469 16 7 3.4753 -0.8770 -3.6851 17 6 4.2468 -0.4569 -4.7072 18 8 3.7318 -0.0625 -5.7353 19 6 5.7182 -0.4758 -4.5782 20 6 6.6571 -0.1942 -5.6005 21 6 7.8658 -0.3346 -5.0227 22 7 7.6660 -0.6813 -3.7281 23 7 6.4064 -0.7521 -3.4878 24 6 8.7518 -0.9254 -2.7677 25 6 10.0532 -1.1609 -3.5400 26 6 10.2646 -0.0272 -4.5479 27 6 9.2179 -0.1491 -5.6640 28 6 4.0772 -1.4754 -2.4823 29 6 3.5704 -0.7216 -1.2487 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2498 -2.3957 4.2416 35 1 1.6760 -1.7487 -1.2492 36 1 1.9135 1.0206 -2.5120 37 1 0.4399 0.0215 -2.4871 38 1 1.5577 -1.7338 -3.7816 39 1 1.7349 -0.1823 -4.6385 40 1 6.4486 0.0764 -6.6250 41 1 8.5184 -1.8058 -2.1688 42 1 8.8660 -0.0598 -2.1152 43 1 9.9937 -2.1114 -4.0701 44 1 10.8899 -1.1866 -2.8419 45 1 11.2642 -0.1020 -4.9762 46 1 10.1540 0.9340 -4.0460 47 1 9.4473 -1.0089 -6.2935 48 1 9.2176 0.7591 -6.2668 49 1 5.1627 -1.3947 -2.5394 50 1 3.7920 -2.5251 -2.4127 51 1 3.9344 0.3054 -1.2741 52 1 3.9337 -1.2142 -0.3468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713677257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:09 Heat of formation + Delta-G solvation = 32.445033 kcal Electronic energy + Delta-G solvation = -31259.891335 eV Core-core repulsion = 27260.170139 eV Total energy + Delta-G solvation = -3999.721196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.87081 -41.08359 -39.16016 -37.51784 -36.87582 -34.64875 -34.05616 -32.75395 -32.11224 -31.18403 -29.90712 -29.64071 -26.88576 -26.08792 -25.27225 -24.19276 -23.76248 -22.99244 -22.13560 -21.12866 -20.63959 -19.81237 -19.02972 -18.04807 -17.80889 -17.11241 -16.95474 -16.77382 -16.22122 -15.67458 -15.53895 -15.33211 -15.22354 -15.01941 -14.96907 -14.88243 -14.58741 -14.50607 -14.22946 -13.97606 -13.72580 -13.65568 -13.42178 -13.02846 -12.88767 -12.83609 -12.76228 -12.31201 -12.27863 -12.18433 -12.06780 -11.95295 -11.86999 -11.82474 -11.67147 -11.45551 -11.35834 -11.20676 -10.96539 -10.64916 -10.15240 -9.93113 -9.63504 -8.94628 -7.90549 -5.16988 0.45432 1.11837 1.42436 1.46681 1.47720 1.55794 2.01259 2.29713 2.57739 3.20238 3.42650 3.48339 3.65612 3.76745 3.78444 3.86963 3.88395 3.89810 4.12989 4.21050 4.27869 4.31071 4.38055 4.41188 4.49393 4.53547 4.56027 4.59463 4.68456 4.73995 4.79978 4.86330 4.86771 4.89642 4.95174 5.02404 5.04039 5.05550 5.09281 5.13786 5.14206 5.22458 5.31028 5.32628 5.41501 5.49047 5.54696 5.62840 5.69044 5.94988 6.29629 6.32237 6.84658 7.11602 7.38291 8.15970 8.40006 9.32824 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.002957 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.539717 B = 9467.889243 C =11742.754555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 H 0.031 0.969 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.273 1.273 13 C -0.081 4.081 14 C -0.116 4.116 15 C 0.112 3.888 16 N -0.594 5.594 17 C 0.598 3.402 18 O -0.572 6.572 19 C -0.039 4.039 20 C -0.199 4.199 21 C 0.028 3.972 22 N -0.280 5.280 23 N -0.274 5.274 24 C 0.103 3.897 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.052 4.052 28 C 0.083 3.917 29 C -0.104 4.104 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.166 0.834 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.103 0.897 49 H 0.135 0.865 50 H 0.067 0.933 51 H 0.043 0.957 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.855 1.441 -20.368 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.050 0.950 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.198 1.198 13 C -0.100 4.100 14 C -0.154 4.154 15 C -0.010 4.010 16 N -0.326 5.326 17 C 0.386 3.614 18 O -0.451 6.451 19 C -0.197 4.197 20 C -0.227 4.227 21 C -0.097 4.097 22 N -0.069 5.069 23 N -0.110 5.110 24 C -0.015 4.015 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.090 4.090 28 C -0.040 4.040 29 C -0.142 4.142 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.184 0.816 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.151 0.849 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.556 1.484 -19.549 25.027 hybrid contribution -0.282 0.188 0.758 0.830 sum 15.274 1.672 -18.791 24.273 Atomic orbital electron populations 1.22347 0.97751 1.00918 1.00603 1.20417 0.92681 0.94529 0.85825 0.95041 1.42555 1.78329 1.10221 1.06008 1.19543 1.34417 0.93908 0.88506 0.91372 1.25425 1.03323 0.96872 1.01018 1.69807 1.52890 1.10011 1.29149 0.85252 0.76820 0.78010 0.80383 1.21749 1.22178 1.19844 1.21286 0.94959 0.99689 0.94091 1.21930 1.02154 0.98760 0.92587 1.21748 0.78360 1.01707 0.99148 1.48115 1.07510 1.59446 1.17496 1.17270 0.84581 0.76751 0.82790 1.90710 1.74378 1.50384 1.29629 1.21901 0.94037 1.11176 0.92622 1.21480 0.90210 1.09880 1.01118 1.21878 0.98750 1.03700 0.85392 1.46394 1.04099 1.46593 1.09790 1.73032 0.91572 1.21209 1.25192 1.22619 0.83582 1.04682 0.90599 1.21973 0.94783 1.00325 0.99567 1.21738 1.00202 0.98569 0.95741 1.20589 0.85583 1.04934 0.97884 1.22710 1.02674 0.96041 0.82544 1.21614 0.95798 0.99757 0.97033 0.90752 0.93672 0.94995 0.79497 0.94198 0.91336 0.92485 0.88253 0.89945 0.89316 0.81612 0.87766 0.88195 0.90177 0.86204 0.87514 0.91475 0.87794 0.87841 0.84864 0.91475 0.93803 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.14 71.98 0.66 -4.89 16 2 C 0.17 6.91 2.47 44.99 0.11 7.02 16 3 H 0.03 1.33 8.08 -2.38 -0.02 1.31 16 4 N -0.73 -36.66 4.41 -322.95 -1.42 -38.08 16 5 C -0.23 -12.92 9.93 84.03 0.83 -12.09 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 7 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 8 N -0.97 -58.92 13.06 21.65 0.28 -58.63 16 9 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C -0.08 -2.68 1.79 -10.77 -0.02 -2.70 16 14 C -0.12 -3.18 5.04 30.67 0.15 -3.03 16 15 C 0.11 3.05 6.41 86.36 0.55 3.60 16 16 N -0.59 -18.35 2.98 -821.75 -2.45 -20.81 16 17 C 0.60 20.08 7.70 86.75 0.67 20.74 16 18 O -0.57 -21.45 16.37 -3.94 -0.06 -21.51 16 19 C -0.04 -1.19 6.88 42.48 0.29 -0.90 16 20 C -0.20 -4.94 10.76 22.30 0.24 -4.70 16 21 C 0.03 0.52 6.57 41.21 0.27 0.80 16 22 N -0.28 -5.97 3.74 -333.33 -1.25 -7.21 16 23 N -0.27 -7.75 8.44 -48.06 -0.41 -8.16 16 24 C 0.10 1.37 7.17 86.33 0.62 1.99 16 25 C -0.13 -0.78 5.91 30.70 0.18 -0.60 16 26 C -0.13 -0.68 5.98 30.82 0.18 -0.50 16 27 C -0.05 -0.46 6.28 30.05 0.19 -0.28 16 28 C 0.08 2.56 6.34 86.31 0.55 3.11 16 29 C -0.10 -3.63 5.22 30.67 0.16 -3.47 16 30 H 0.07 2.10 6.40 -2.39 -0.02 2.08 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.37 20.02 7.58 -92.71 -0.70 19.32 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 2.32 6.36 -2.39 -0.02 2.31 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.45 7.04 -2.39 -0.02 2.44 16 40 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 44 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 47 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.13 4.18 3.79 -70.54 -0.27 3.91 16 50 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.06 2.48 7.40 -2.39 -0.02 2.46 16 Total: -1.00 -74.31 401.88 2.79 -71.52 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.04 Total: 34.00 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.11 Total: 0.32 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -5.24 Total: -132.89 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.31 2.79 -71.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713677257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.968 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds