Wall clock time and date at job start Wed Apr 1 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47459 * 2 1 4 4 N 1.46498 * 109.46754 * 239.99455 * 2 1 3 5 5 C 1.36938 * 120.00301 * 85.00395 * 4 2 1 6 6 H 1.08003 * 119.99630 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00553 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00443 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46793 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47021 * 120.00223 * 9 7 5 12 12 H 1.48501 * 109.47264 * 240.00339 * 9 7 5 13 13 C 1.53002 * 109.46820 * 120.00013 * 2 1 3 14 14 C 1.53041 * 109.46417 * 60.02308 * 13 2 1 15 15 C 1.53194 * 109.31276 * 178.60324 * 14 13 2 16 16 N 1.46922 * 108.76672 * 54.65539 * 15 14 13 17 17 C 1.34773 * 120.63351 * 126.36171 * 16 15 14 18 18 O 1.21597 * 120.00513 * 176.12288 * 17 16 15 19 19 C 1.47428 * 119.99567 * 356.12250 * 17 16 15 20 20 C 1.39973 * 120.61369 * 53.30656 * 19 17 16 21 21 C 1.38333 * 118.36924 * 180.02562 * 20 19 17 22 22 C 1.38367 * 119.50892 * 0.02562 * 21 20 19 23 23 N 1.31851 * 121.22212 * 0.02562 * 22 21 20 24 24 C 1.32438 * 121.77118 * 359.65664 * 23 22 21 25 25 N 1.38263 * 119.82621 * 180.31278 * 24 23 22 26 26 C 1.46897 * 110.99911 * 304.55593 * 25 24 23 27 27 C 1.46897 * 110.99819 * 68.50874 * 25 24 23 28 28 C 1.46932 * 118.73839 * 306.38252 * 16 15 14 29 29 C 1.53045 * 109.45856 * 299.96633 * 13 2 1 30 30 H 1.09005 * 109.46981 * 59.99933 * 1 2 3 31 31 H 1.09006 * 109.47015 * 300.00602 * 1 2 3 32 32 H 1.08995 * 109.48046 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00164 * 264.99943 * 4 2 1 34 34 H 0.96997 * 119.99939 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46073 * 179.97438 * 13 2 1 36 36 H 1.09005 * 109.49598 * 298.56867 * 14 13 2 37 37 H 1.08995 * 109.49760 * 58.66106 * 14 13 2 38 38 H 1.09002 * 109.59565 * 294.86925 * 15 14 13 39 39 H 1.08998 * 109.70046 * 174.50507 * 15 14 13 40 40 H 1.08001 * 120.81270 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.24428 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.39037 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47433 * 60.00483 * 26 25 24 44 44 H 1.08998 * 109.46756 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47137 * 299.99720 * 26 25 24 46 46 H 1.09005 * 109.47583 * 55.00650 * 27 25 24 47 47 H 1.09004 * 109.47107 * 175.00720 * 27 25 24 48 48 H 1.09002 * 109.47690 * 295.00532 * 27 25 24 49 49 H 1.08996 * 109.58508 * 293.82293 * 28 16 15 50 50 H 1.08998 * 109.70498 * 173.46528 * 28 16 15 51 51 H 1.08997 * 109.50148 * 301.34063 * 29 13 2 52 52 H 1.09006 * 109.49683 * 61.40672 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1961 5 6 2.1491 -0.0078 -2.3758 6 1 1.8927 1.0403 -2.4242 7 6 2.6122 -0.6620 -3.5090 8 7 2.9251 -1.9392 -3.4498 9 14 2.7913 0.2698 -5.1180 10 1 2.3775 1.6823 -4.9206 11 1 4.2084 0.2268 -5.5598 12 1 1.9310 -0.3586 -6.1525 13 6 2.0399 -0.7213 1.2493 14 6 1.5301 -2.1643 1.2488 15 6 2.0712 -2.8932 2.4828 16 7 1.7084 -2.1257 3.6820 17 6 1.0549 -2.7150 4.7028 18 8 0.8225 -2.0884 5.7186 19 6 0.6219 -4.1196 4.5879 20 6 1.5363 -5.1214 4.2423 21 6 1.0796 -6.4237 4.1470 22 6 -0.2542 -6.6979 4.3926 23 7 -1.1006 -5.7400 4.7160 24 6 -0.7157 -4.4777 4.8272 25 7 -1.6361 -3.5063 5.1749 26 6 -2.7792 -3.5099 4.2523 27 6 -2.0807 -3.6758 6.5647 28 6 2.0711 -0.7034 3.7470 29 6 1.5303 0.0009 2.4987 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5140 0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 3.2484 -2.3965 -4.2417 35 1 3.1299 -0.7216 1.2489 36 1 0.4404 -2.1651 1.2742 37 1 1.8738 -2.6712 0.3472 38 1 3.1562 -2.9724 2.4141 39 1 1.6349 -3.8903 2.5413 40 1 2.5727 -4.8833 4.0538 41 1 1.7590 -7.2204 3.8821 42 1 -0.6087 -7.7153 4.3173 43 1 -3.2692 -4.4830 4.2846 44 1 -3.4875 -2.7361 4.5485 45 1 -2.4290 -3.3128 3.2391 46 1 -1.2134 -3.6880 7.2248 47 1 -2.7353 -2.8488 6.8402 48 1 -2.6235 -4.6162 6.6605 49 1 3.1560 -0.6042 3.7814 50 1 1.6345 -0.2531 4.6385 51 1 1.8741 1.0352 2.4868 52 1 0.4405 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713683776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:50 Heat of formation + Delta-G solvation = 33.167567 kcal Electronic energy + Delta-G solvation = -31845.414932 eV Core-core repulsion = 27845.725068 eV Total energy + Delta-G solvation = -3999.689864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21794 -39.68087 -37.84975 -37.13936 -35.34212 -33.37157 -32.59184 -31.20363 -30.62934 -30.43602 -28.18694 -27.77815 -25.81196 -25.31618 -24.51397 -23.54388 -23.15378 -21.86996 -21.46605 -19.84757 -18.61105 -17.47266 -17.42517 -17.10402 -16.99728 -16.06876 -15.47590 -15.29374 -14.97682 -14.77551 -14.44284 -14.30597 -14.18223 -13.79322 -13.71688 -13.57433 -13.44181 -13.18771 -12.91016 -12.69040 -12.58616 -12.41348 -12.18009 -12.13770 -11.91524 -11.87383 -11.57434 -11.36071 -11.03114 -10.86624 -10.57113 -10.35466 -10.28235 -10.25977 -10.12972 -10.04545 -9.79841 -9.58015 -9.52753 -9.25721 -8.90983 -8.79461 -8.53696 -6.94711 -5.77336 -3.04748 0.53100 0.83274 2.66245 2.97992 3.39409 3.42320 3.44180 3.48571 3.50256 4.11043 4.41131 4.50539 4.58534 4.74586 4.78817 4.90170 5.03342 5.10999 5.13087 5.16950 5.19664 5.26586 5.34535 5.40996 5.42684 5.50723 5.55919 5.63508 5.67703 5.71521 5.72969 5.73610 5.83590 5.85298 5.99664 6.01535 6.06820 6.15892 6.24133 6.30301 6.33840 6.50968 6.57910 6.60473 6.70118 6.78162 6.94183 7.00193 7.17507 7.39476 7.55854 7.71225 8.18945 8.42469 9.53543 10.12264 10.46707 11.45745 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.002742 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.814020 B =10208.219973 C =10676.315799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.725 5.725 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.089 4.089 14 C -0.127 4.127 15 C 0.100 3.900 16 N -0.602 5.602 17 C 0.576 3.424 18 O -0.523 6.523 19 C -0.147 4.147 20 C -0.044 4.044 21 C -0.180 4.180 22 C 0.128 3.872 23 N -0.514 5.514 24 C 0.337 3.663 25 N -0.490 5.490 26 C 0.028 3.972 27 C 0.038 3.962 28 C 0.116 3.884 29 C -0.128 4.128 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.037 0.963 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -8.031 19.550 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.108 4.108 14 C -0.165 4.165 15 C -0.023 4.023 16 N -0.335 5.335 17 C 0.363 3.637 18 O -0.399 6.399 19 C -0.154 4.154 20 C -0.070 4.070 21 C -0.200 4.200 22 C -0.032 4.032 23 N -0.226 5.226 24 C 0.108 3.892 25 N -0.212 5.212 26 C -0.119 4.119 27 C -0.108 4.108 28 C -0.006 4.006 29 C -0.167 4.167 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.218 0.782 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.092 0.908 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.156 -7.267 20.082 22.226 hybrid contribution 0.659 -0.527 -1.340 1.584 sum -5.498 -7.795 18.742 21.030 Atomic orbital electron populations 1.22522 0.99579 1.00767 0.99732 1.20191 0.91738 0.95176 0.86084 0.93619 1.42501 1.78138 1.10706 1.05347 1.19297 1.35891 0.93863 0.87413 0.91251 1.24707 1.02423 0.95993 0.97988 1.69659 1.51373 1.08644 1.28702 0.86151 0.77262 0.78829 0.84184 1.20617 1.21957 1.21971 1.21386 1.00288 0.94469 0.94707 1.21960 1.01240 0.96343 0.96937 1.22052 1.00238 0.95327 0.84666 1.48023 1.56936 1.11122 1.17437 1.17699 0.77174 0.85577 0.83257 1.90756 1.55307 1.64582 1.29304 1.20648 0.94425 0.95296 1.05044 1.21796 0.99959 0.92166 0.93095 1.22089 0.97615 0.97318 1.02931 1.22742 0.89640 0.98249 0.92522 1.67833 1.39185 1.01028 1.14520 1.19682 0.90277 0.87101 0.92098 1.59834 1.14687 1.42096 1.04578 1.22412 0.91748 1.01460 0.96240 1.22329 1.00847 1.00750 0.86879 1.21620 0.99672 0.79689 0.99622 1.22014 1.01626 0.99254 0.93766 0.93208 0.94357 0.93442 0.78236 0.93667 0.91076 0.91454 0.89702 0.91057 0.90066 0.83750 0.83823 0.82333 0.93716 0.90552 0.91335 0.91082 0.90502 0.94463 0.91612 0.89211 0.90777 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.79 37.16 0.33 -2.64 16 2 C 0.18 3.38 2.72 -67.93 -0.18 3.19 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.39 5.04 -53.43 -0.27 -17.66 16 5 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 9 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C -0.09 -1.36 2.14 -90.57 -0.19 -1.56 16 14 C -0.13 -1.85 4.81 -26.61 -0.13 -1.98 16 15 C 0.10 1.20 5.53 -3.71 -0.02 1.18 16 16 N -0.60 -7.77 2.97 -174.04 -0.52 -8.28 16 17 C 0.58 8.19 6.86 -12.52 -0.09 8.10 16 18 O -0.52 -8.86 16.09 5.28 0.08 -8.77 16 19 C -0.15 -1.85 4.93 -104.64 -0.52 -2.36 16 20 C -0.04 -0.42 7.54 -38.90 -0.29 -0.71 16 21 C -0.18 -1.42 10.09 -39.50 -0.40 -1.81 16 22 C 0.13 1.13 11.16 -17.50 -0.20 0.94 16 23 N -0.51 -5.99 9.57 -12.20 -0.12 -6.10 16 24 C 0.34 4.32 5.33 -155.18 -0.83 3.49 16 25 N -0.49 -6.21 4.06 -188.74 -0.77 -6.98 16 26 C 0.03 0.31 9.39 60.06 0.56 0.88 16 27 C 0.04 0.42 9.46 60.06 0.57 0.99 16 28 C 0.12 1.45 6.42 -3.71 -0.02 1.42 16 29 C -0.13 -1.67 4.97 -26.61 -0.13 -1.80 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 32 H 0.05 0.85 6.46 -51.93 -0.34 0.52 16 33 H 0.38 9.60 6.04 -40.82 -0.25 9.35 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 37 H 0.08 1.41 6.46 -51.93 -0.34 1.07 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.90 4.69 -51.93 -0.24 0.66 16 40 H 0.14 1.13 7.36 -52.49 -0.39 0.74 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.04 0.48 7.75 -51.93 -0.40 0.08 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.18 7.03 -51.93 -0.37 0.81 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -32.90 404.20 -9.94 -42.84 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.36 Total: 8.25 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.78 Total: 0.30 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.94 Total: -65.87 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.90 -9.94 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713683776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.008 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds